Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013211

Physical Location & Seq

Genomic Coordinates Forward (+)

10498748 .. 10500809

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGAGGTGGTAAAGACAAGCATCATGATGAGCAAGAGAAAGGATTTCATGGTTTTCCAGGAGGTGGACATTACCCACCTGCTCAAGGAGGTTACCCTCCTCAAGGTTACCCACCACAACAAGGGTATCCTCCAGCTGGAGGCTACCCACCTGCCGGATATCCTCCTGGTGCTTACCCTGCTGCGCCCGGTGGTTATCCTCCTGCACCTGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGGACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAGCCGCAGCAGCTTATGGAGCTCACCATGTTGGTCACGCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGGAGGGTATGGCCATGCCCCTGCTCATGGCTTTGGCCATGGTGGTCATGGTAAATTCAAGCACGGAAAGCATGGAGGCAAATTCAAGCACGGAAAGCATGGAAAGCACGGGAAACATGGCATGTTTGGAGGAGGAGGCAAATTCAAGAAGTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XYPPX

Protein Analysis

179

Amino Acids

17.74

Weight (kDa)

9.75

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19200
fragaria_vesca	FvH4_7g23640
malus_domestica	MD01G1142300.v1.1 MD07G1208000.v1.1
prunus_persica	Prupe.2G243300_v2.0.a1
pyrus_communis	pycom01g16250 pycom07g19370
rosa_chinensis	RchiOBHm_Chr1g0368911
rosa_laevigata	RLG00000027177
rosa_multiflora	Rmu_sc0004250.1_g000044 Rmu_sc0012648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00288210
rosa_rugosa	Rorug01G0345800
rosa_samantha	Rh1AG352800 Rh1BG316300 Rh1CG331000 Rh1DG347800
rosa_wichuraiana	Rw1G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	88, 160, 284
Acc36I	ACCTGC	3 cut(s)	88, 160, 284
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	1 cut(s)	312
AcoI	YGGCCR	2 cut(s)	391, 415
AcsI	RAATTY	3 cut(s)	434, 461, 521
AgsI	TTSAA	3 cut(s)	439, 466, 526
AjnI	CCWGG	4 cut(s)	58, 166, 208, 241
AluBI	AGCT	5 cut(s)	137, 248, 302, 320, 329
AluI	AGCT	5 cut(s)	137, 248, 302, 320, 329
Alw21I	GWGCWC	2 cut(s)	250, 331
AoxI	GGCC	2 cut(s)	391, 415
ApeKI	GCWGC	5 cut(s)	182, 299, 308, 314, 317
ApoI	RAATTY	3 cut(s)	434, 461, 521
AspLEI	GCGC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	242, 323
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BalI	TGGCCA	2 cut(s)	393, 417
BanII	GRGCYC	2 cut(s)	250, 331
Bbv12I	GWGCWC	2 cut(s)	250, 331
BbvI	GCAGC	5 cut(s)	169, 311, 320, 326, 329
BciT130I	CCWGG	4 cut(s)	60, 168, 210, 243
BciVI	GTATCC	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	3 cut(s)	88, 160, 284
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	6 cut(s)	183, 300, 309, 312, 315, 318
BlsI	GCNGC	6 cut(s)	184, 301, 310, 313, 316, 319
Bme1390I	CCNGG	5 cut(s)	60, 168, 189, 210, 243
BmrFI	CCNGG	5 cut(s)	60, 168, 189, 210, 243
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	4 cut(s)	117, 159, 231, 264
BpuEI	CTTGAG	2 cut(s)	69, 87
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	418
BseBI	CCWGG	4 cut(s)	60, 168, 210, 243
BseDI	CCNNGG	1 cut(s)	418
BseRI	GAGGAG	3 cut(s)	90, 525, 528
BseXI	GCAGC	5 cut(s)	169, 311, 320, 326, 329
BsgI	GTGCAG	4 cut(s)	189, 222, 318, 327
BshFI	GGCC	2 cut(s)	393, 417
BsiHKAI	GWGCWC	2 cut(s)	250, 331
BsiSI	CCGG	2 cut(s)	156, 189
BsnI	GGCC	2 cut(s)	393, 417
Bsp1286I	GDGCHC	2 cut(s)	250, 331
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	2 cut(s)	393, 417
BspHI	TCATGA	1 cut(s)	25
BspMI	ACCTGC	3 cut(s)	88, 160, 284
BssECI	CCNNGG	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	4 cut(s)	60, 168, 210, 243
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	229, 369
BstDSI	CCRYGG	1 cut(s)	418
BstEII	GGTNACC	3 cut(s)	92, 107, 215
BstENI	CCTNNNNNAGG	2 cut(s)	84, 102
BstHHI	GCGC	1 cut(s)	187
BstNI	CCWGG	4 cut(s)	60, 168, 210, 243
BstNSI	RCATGY	2 cut(s)	371, 505
BstPI	GGTNACC	3 cut(s)	92, 107, 215
BstSCI	CCNGG	5 cut(s)	58, 166, 187, 208, 241
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	5 cut(s)	169, 311, 320, 326, 329
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	393, 417
BtgI	CCRYGG	1 cut(s)	418
BveI	ACCTGC	3 cut(s)	88, 160, 284
Cac8I	GCNNGC	2 cut(s)	229, 369
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	187
EaeI	YGGCCR	2 cut(s)	391, 415
Ecl136II	GAGCTC	2 cut(s)	248, 329
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	250, 331
Eco32I	GATATC	1 cut(s)	161
Eco53kI	GAGCTC	2 cut(s)	248, 329
Eco91I	GGTNACC	3 cut(s)	92, 107, 215
EcoICRI	GAGCTC	2 cut(s)	248, 329
EcoNI	CCTNNNNNAGG	2 cut(s)	84, 102
EcoO65I	GGTNACC	3 cut(s)	92, 107, 215
EcoRII	CCWGG	4 cut(s)	58, 166, 208, 241
EcoRV	GATATC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	250, 331
ErhI	CCWWGG	1 cut(s)	418
Fnu4HI	GCNGC	6 cut(s)	183, 300, 309, 312, 315, 318
FriOI	GRGCYC	2 cut(s)	250, 331
Fsp4HI	GCNGC	6 cut(s)	183, 300, 309, 312, 315, 318
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	6 cut(s)	183, 300, 309, 312, 315, 318
GsuI	CTGGAG	4 cut(s)	117, 159, 231, 264
HaeIII	GGCC	2 cut(s)	393, 417
HapII	CCGG	2 cut(s)	156, 189
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	156, 189
HphI	GGTGA	2 cut(s)	242, 323
Hpy166II	GTNNAC	2 cut(s)	68, 275
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	3 cut(s)	26, 258, 526
Hpy8I	GTNNAC	2 cut(s)	68, 275
HpyCH4V	TGCA	4 cut(s)	206, 239, 299, 308
HspAI	GCGC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	245, 326
Lsp1109I	GCAGC	5 cut(s)	169, 311, 320, 326, 329
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	4 cut(s)	92, 107, 215, 341
MhlI	GDGCHC	2 cut(s)	250, 331
MlsI	TGGCCA	2 cut(s)	393, 417
MluCI	AATT	3 cut(s)	434, 461, 521
MluNI	TGGCCA	2 cut(s)	393, 417
MlyI	GAGTC	1 cut(s)	270
Mox20I	TGGCCA	2 cut(s)	393, 417
MscI	TGGCCA	2 cut(s)	393, 417
MslI	CAYNNNNRTG	2 cut(s)	27, 267
Msp20I	TGGCCA	2 cut(s)	393, 417
MspA1I	CMGCKG	2 cut(s)	137, 302
MspI	CCGG	2 cut(s)	156, 189
MspR9I	CCNGG	5 cut(s)	60, 168, 189, 210, 243
MvaI	CCWGG	4 cut(s)	60, 168, 210, 243
NciI	CCSGG	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	2 cut(s)	371, 505
PaeI	GCATGC	1 cut(s)	371
PagI	TCATGA	1 cut(s)	25
PaqCI	CACCTGC	3 cut(s)	88, 160, 284
PflMI	CCANNNNNTGG	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	6 cut(s)	184, 301, 310, 313, 316, 319
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	2 cut(s)	250, 331
Psp6I	CCWGG	4 cut(s)	58, 166, 208, 241
PspEI	GGTNACC	3 cut(s)	92, 107, 215
PspGI	CCWGG	4 cut(s)	58, 166, 208, 241
PvuII	CAGCTG	2 cut(s)	137, 302
RseI	CAYNNNNRTG	2 cut(s)	27, 267
SacI	GAGCTC	2 cut(s)	250, 331
SatI	GCNGC	6 cut(s)	183, 300, 309, 312, 315, 318
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	5 cut(s)	60, 168, 189, 210, 243
SduI	GDGCHC	2 cut(s)	250, 331
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	2 cut(s)	27, 267
SmlI	CTYRAG	2 cut(s)	84, 102
SmoI	CTYRAG	2 cut(s)	84, 102
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	3 cut(s)	434, 461, 521
SsiI	CCGC	1 cut(s)	312
SstI	GAGCTC	2 cut(s)	250, 331
StyD4I	CCNGG	5 cut(s)	58, 166, 187, 208, 241
StyI	CCWWGG	1 cut(s)	418
TasI	AATT	3 cut(s)	434, 461, 521
TauI	GCSGC	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	5 cut(s)	182, 299, 308, 314, 317
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	459, 486
Van91I	CCANNNNNTGG	1 cut(s)	65
XagI	CCTNNNNNAGG	2 cut(s)	84, 102
XapI	RAATTY	3 cut(s)	434, 461, 521
XceI	RCATGY	2 cut(s)	371, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.