Rorug01G0345800

Glycine-rich protein A3-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
46320790 .. 46324428
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0345800.1

Sequence Viewer

Length: 3639 bp
ATGAAGCTCCTTTATTGGAATATTCGTGGTATTGGCAACTCTGATACCCGTGCAGAATTATCAAATTTTTGTTCTAAATATCACCCAGATTTGGTTTGCATTTCAGAGCCAATGATTCCTTTTGACTCTGTTCCTGCTGCTTACTGGGCTTCCTTGAATCTACGACTAATTGCGGTAAATGATAGAGGTACTCTTCTTCCAAATATCTGGCTTCTTGGTTCTTTACATATCTCTTCTCCTACACTAGTGCTCTCTGCAGATCAACACATTACTATTCAGATTACTTTGGAAGGCACTCTTACTCAACTATCTTGTGTCTACGCGGCTACAACTGCACTCAAACGTCGCAAATTATGGTCGGATTTATTACTTCTTCATCAACAGACCACCATTCCATGGATGGCAATAGGAGACTTTAATGCAGTATTGGGGGCTCATGAGGCCATGAATGGGAGTATCCCTACGCGTTCATCTTGTGAGGATTTTCGCGATGCCACAGAACGATGTCATTTCACCCATCTTGATACTTCAGGGGCTTTCTTTACATGGTCTAAAGGGCGCGGTCGGAAGCACTTGGAACGACGGCTTGATCGCTCCTTATGTGATGATGGCTGGTTTGAGGCTTGGCCATTTACCAACTGTATAGCTCTTCCCCGAGTGGTTTCGGATCATAATGGTTTACTTTTTTCAGCCGGTAAGTCTGTACCAGGGGGTCCTAAACCTTTTCGTTTCCAATCTATGTGGCTTCTCCACTTTTCTTTCAAGGAGTTGGTGGCGAATTGTTGGTCGACCACCAGGCCAGCTGGTTGTCCCATGTATGTGACGCTACAAAAATTAAAGGCCTTGAAGTTATGCCTTAAGCAATGGAACAACACGGTATTTGGGAATGTTCATAGAAACTTGGAGTTGGCCCGTGCTAAGTTGACTGCTATTCAACAAGATATTGCTTCTAATGGTTCTACTGATATTAACTTTGAGGCTGAAGTTCTTGCAAAGGCCGATGTTCTTAATGCGGTTAAGCATCAGGAGACTTTTTGGAGGGACAGAGCTCGTGTTAAATGGTTTACCGAGGGGGATAAATGCTCAAATTTTTTCCATGCTTATGCCCGCAATAAGGCAAGGCGCTCTTCAATGCATTGCTTACAGGTTGGGGGAAATCTTCTTATTGATCCACAAGATATTGCTAATCATGTTGTTGAGTTTTATAAATCGTTATATGCTTCAGATGTTGCTCCAAGTGGTGTAGTTGATTTCTGCAAGGTCATTCCCTCCTTGGTTTCTGAGGATGATAATTCAGTTTTGGTTTCTATTCCCACTGCAGAAGAGATTCGACGTGTTGTTTTCTCTATGGACCCTTCTAGTTCTCCTGGTCCAGATGGTTTTCCCGGCTCCTTTTACCAAAGTTGCTGGGATATTGTTGGTAATGATGTTATTGGCTTTGTGCAATTCTTTTTCCAACAAAATTGGTTATATCCAAATGCTAATTCTAACTTCATTGTGTTAATTCCGAAGACGGAAGGGGCGAATATGATCTCTCAGTTCAGGCCAATTGCTTTGGCCAATTTTTTATTTAAGATCATTCCAAAAATTATGGCAGATCGTTTGGGTCCTATAGCTTCACGTATTGTTTCAGCTCATCAGACTGCCTTTCTTAAAGGCCGTCGTATTGCAGATTGCATTGGCCTTGTTTCTGAGGGCTTCAATCTATTGGATAGGAAAATCTACGGAGGTAATGTGGGCATTAAAGTTGATATTGCCAAAGCATTTGATACTCTTCACTGGCAGTTCCTTTTTCAGGTCTTAGAGAGGTTTGGGTTCTCCTCAAGATTCAGAAATTTAATTCAGACTATTTTAAATTCTGCTAAGCTGTCTGTCTTGATTAATGGGACGCCACAAGGTTTTTTTTCTTGTGCTCGAGGGGTAAGACAAGGGGATCCTCTATCTCCTTTATTGTTCTGCATTGCGGAAGAAGCACTAAGTCGAGGACTGTCCTCTCTTTTTGATGCTCGAAAGATCAAACCTATTTCTATGCCGAGGAGTTGTCTAATTACTCATGTGCTCTATGCTGATGATCTTTTTATTTTCTGTCGAGGGGATATATTTTCTCTTCACCGTTTGCAACTCTTTCTGGATGAGTATGGTGCTGCTTCAGGTCAGATAGTAAATAAAGAGAAGAGTACTTTTTATACTGGTGACAACTATTCTCATCGGCGTAGGGTTATCAAACGTTTATTGGGCTTCAAGTTAGGTACTACTCCACTTACTTATCTGGGTGTTCTTATATTCAAGGGGAAGCCTCGACGTATACACCTTCAAGCAATTGCTGATAAGGCTAAATCTCGTCTTGTTGGCTGGCAAGGAAAGTTGTTGTCCATGGCGGGGCGTGTTCAGTTGGCTCATGATGTCTTTCAGAGTTTGCTAATTCATAGTTTCTCTGTGTACTTATGGCCTTCTTCACTATTGAAACACTTGTCTACATGTGCTCGAAACTTTATTTGGTCTGGATATTTATCAAAAAGAAAACTTGTCATCGTTTCTTGGCGGCAGGTTTGTGTGCCAAAGAAGGAGGGGGGCCTTGGGCTACGTGATCTCAAGTCTCTTAACTTGGAAGCTCTGCTATCTCTTAGTTGGTCTACTCTCACATCGGGTTCAATATGGAGCAGCTATGCATCTCAACGGTTTTCTATTTGCTGCAATATGAAATATCGGTATTTTAGGTCCTCGGTTTGGCATGGTTTAAAGGCAGCTCTTCCTTTCATTTTCCATAACTTCAAGTGGCTTATTGGTGATGGAAAGTTGGTGAATTTATGGATGGACAAGTGGTTGAATGCCCCCTTAATTGTAAAATTACAGGCTCCGAATTTTCCCAAACGTTTGATGAGTAAGGTGGAAAATTTTATTACTAATCAGCAATGGACCTTGCCCAATGAATTTTCAATTTCGTTTCCGGTTTTAGCGGCTGAAATTCTTCAAATCCCACTACCAATTGAACCAGAAAATGATGTATTAATTTGGGTGCCTTCAAGCTCAGGTTCTTTCTCTTTTTCTGATGGATACCATCTAGTCAGACAATCATTTTCGGAAGATGAGTGGGTTTCTAAGGTTTGGCATTCTTTCATTCCACCACGGTTATCTTTATTGGCATGGCGCCTTTCCTATGATAAACTACCTACTGATGTGCAGCTTCAAGAACGGGGTATCCCAATAGTGTCTGTTTGCCAGCTTTGTACTTTTGGCTATATTGAGGATTCTACTCACTTATTTGTCACTTGCTCGTTTGCGCAACATGTTTGGCAATGGCTAGCATGCTGTTTTGGGACTTTCTTACCGACTAGTGGCACTATTGGTGGGTTATTTACCTCCATTATTGGCAAGTCTTTCTCTCCCCAACTAAAAAATATTTGGCTTGCTAGTTGTCTCTATGCTCTTATGGCTATATGGAAAGCTCGCAATAAGCTTAGATTTGAGGACAATCGCCCTTCCCTCATGCGAATTTTCAGCTCTCTCAAGGCTTGGCTTCGCTTTGCTGCTTCTTACATGCCAGGTTATTCGAATGGTTTGGTTGACACTCAGTTGTTGGTTGGGTTGGGTATTCAGCCTATTCCTAAAAATCGAGTAGCGTCGCGGTTAGTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1212

Amino Acids

136.86

Weight (kDa)

9.43

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 224 1.6e-09 Endonuclease/Exonuclease/phosphatase family
RVT_1 PF00078 502 - 759 4.5e-31 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 1013 - 1098 5.6e-20 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013211)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1206
Acc16I TGCGCA 1 cut(s) 3282
Acc36I ACCTGC 1 cut(s) 2536
AccB1I GGYRCC 2 cut(s) 3016, 3147
AccB7I CCANNNNNTGG 1 cut(s) 396
AccI GTMKAC 5 cut(s) 318, 788, 2305, 2474, 2633
AccII CGCG 5 cut(s) 323, 466, 489, 561, 3625
AclI AACGTT 2 cut(s) 2227, 2872
AclWI GGATC 4 cut(s) 675, 1163, 1928, 1941
AcoI YGGCCR 2 cut(s) 626, 1557
AcuI CTGAAG 4 cut(s) 513, 1002, 1206, 2133
AcyI GRCGYC 2 cut(s) 1889, 3148
AfaI GTAC 6 cut(s) 190, 705, 2179, 2251, 2441, 3229
AfiI CCNNNNNNNGG 8 cut(s) 91, 396, 450, 1114, 1795, 2379, 2727, 3335
AflII CTTAAG 1 cut(s) 857
AflIII ACRYGT 4 cut(s) 464, 1333, 2477, 3286
AhlI ACTAGT 2 cut(s) 244, 3332
AjiI CACGTC 1 cut(s) 1334
AjnI CCWGG 4 cut(s) 706, 794, 1366, 3541
AjuI GAANNNNNNNTTGG 4 cut(s) 1468, 1500, 2479, 2511
AloI GAACNNNNNNTCC 2 cut(s) 3183, 3215
Alw21I GWGCWC 5 cut(s) 252, 1051, 1915, 2061, 2485
Alw26I GTCTC 4 cut(s) 405, 1022, 2601, 3422
AlwI GGATC 4 cut(s) 675, 1163, 1928, 1941
Ama87I CYCGRG 2 cut(s) 654, 1914
ApeKI GCWGC 7 cut(s) 137, 2144, 2661, 2691, 2744, 3181, 3527
ArsI GACNNNNNNTTYG 2 cut(s) 770, 802
AseI ATTAAT 2 cut(s) 1881, 3008
Asp700I GAANNNNTTC 2 cut(s) 1326, 2967
AspLEI GCGC 4 cut(s) 561, 1125, 3150, 3283
AspS9I GGNCC 8 cut(s) 713, 910, 1351, 1370, 1607, 2572, 2718, 2916
AsuC2I CCSGG 1 cut(s) 1386
AsuHPI GGTGA 6 cut(s) 74, 505, 2102, 2204, 2798, 2812
AsuII TTCGAA 1 cut(s) 3551
AsuNHI GCTAGC 1 cut(s) 3301
AvaI CYCGRG 2 cut(s) 654, 1914
AvaII GGWCC 6 cut(s) 713, 1351, 1370, 1607, 2718, 2916
BalI TGGCCA 2 cut(s) 628, 1559
BamHI GGATCC 1 cut(s) 1933
BanI GGYRCC 2 cut(s) 3016, 3147
BanII GRGCYC 2 cut(s) 436, 1051
BauI CACGAG 1 cut(s) 1050
BbsI GAAGAC 1 cut(s) 1517
Bbv12I GWGCWC 5 cut(s) 252, 1051, 1915, 2061, 2485
BbvI GCAGC 7 cut(s) 124, 2131, 2673, 2678, 2756, 3193, 3514
BccI CCATC 8 cut(s) 394, 525, 602, 1370, 2783, 2806, 3044, 3066
BceAI ACGGC 2 cut(s) 599, 1644
BciT130I CCWGG 4 cut(s) 708, 796, 1368, 3543
BciVI GTATCC 3 cut(s) 467, 3047, 3209
BcnI CCSGG 1 cut(s) 1386
BcoDI GTCTC 4 cut(s) 405, 1022, 2601, 3422
BcuI ACTAGT 2 cut(s) 244, 3332
BfaI CTAG 7 cut(s) 245, 1359, 3062, 3302, 3333, 3411, 3637
BfmI CTRYAG 3 cut(s) 255, 1317, 1611
BfoI RGCGCY 2 cut(s) 1126, 3151
BfrI CTTAAG 1 cut(s) 857
BfuAI ACCTGC 1 cut(s) 2536
BfuI GTATCC 3 cut(s) 467, 3047, 3209
BlpI GCTNAGC 1 cut(s) 1863
BmcAI AGTACT 1 cut(s) 2179
Bme1390I CCNGG 5 cut(s) 708, 796, 1368, 1386, 3543
Bme18I GGWCC 6 cut(s) 713, 1351, 1370, 1607, 2718, 2916
BmeT110I CYCGRG 2 cut(s) 654, 1914
BmgBI CACGTC 1 cut(s) 1334
BmgT120I GGNCC 8 cut(s) 713, 910, 1351, 1370, 1607, 2572, 2718, 2916
BmiI GGNNCC 9 cut(s) 714, 1353, 1390, 1608, 1935, 2573, 2856, 3018, 3149
BmrFI CCNGG 5 cut(s) 708, 796, 1368, 1386, 3543
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 4 cut(s) 481, 1030, 1993, 2678
BmtI GCTAGC 1 cut(s) 3305
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 1517
Bpu10I CCTNAGC 1 cut(s) 3028
Bpu1102I GCTNAGC 1 cut(s) 1863
Bpu14I TTCGAA 1 cut(s) 3551
BpuEI CTTGAG 3 cut(s) 1807, 2576, 3491
BpuMI CCSGG 1 cut(s) 1386
BsaAI YACGTR 2 cut(s) 1622, 2585
BsaBI GATNNNNATC 1 cut(s) 2509
BsaHI GRCGYC 2 cut(s) 1889, 3148
BsaJI CCNNGG 9 cut(s) 395, 707, 1068, 1272, 2033, 2373, 2575, 2721, 3125
BsaWI WCCGGW 1 cut(s) 2947
BsaXI ACNNNNNCTCC 2 cut(s) 1719, 1749
Bsc4I CCNNNNNNNGG 8 cut(s) 91, 396, 450, 1114, 1795, 2379, 2727, 3335
Bse118I RCCGGY 1 cut(s) 692
Bse1I ACTGG 3 cut(s) 149, 1784, 2194
Bse3DI GCAATG 5 cut(s) 869, 1135, 1959, 2918, 3302
Bse8I GATNNNNATC 1 cut(s) 2509
BseBI CCWGG 4 cut(s) 708, 796, 1368, 3543
BseDI CCNNGG 9 cut(s) 395, 707, 1068, 1272, 2033, 2373, 2575, 2721, 3125
BseGI GGATG 4 cut(s) 405, 1291, 2137, 2817
BseJI GATNNNNATC 1 cut(s) 2509
BseLI CCNNNNNNNGG 8 cut(s) 91, 396, 450, 1114, 1795, 2379, 2727, 3335
BseMI GCAATG 5 cut(s) 869, 1135, 1959, 2918, 3302
BseMII CTCAG 5 cut(s) 1272, 1550, 1683, 3042, 3584
BseNI ACTGG 3 cut(s) 149, 1784, 2194
BseRI GAGGAG 2 cut(s) 1810, 2050
BseXI GCAGC 7 cut(s) 124, 2131, 2673, 2678, 2756, 3193, 3514
BseYI CCCAGC 1 cut(s) 1407
BsgI GTGCAG 3 cut(s) 72, 318, 3200
Bsh1236I CGCG 5 cut(s) 323, 466, 489, 561, 3625
Bsh1285I CGRYCG 1 cut(s) 565
BshNI GGYRCC 2 cut(s) 3016, 3147
BsiEI CGRYCG 1 cut(s) 565
BsiHKAI GWGCWC 5 cut(s) 252, 1051, 1915, 2061, 2485
BsiHKCI CYCGRG 2 cut(s) 654, 1914
BsiSI CCGG 3 cut(s) 693, 1386, 2948
BslFI GGGAC 4 cut(s) 795, 1055, 1900, 3331
BslI CCNNNNNNNGG 8 cut(s) 91, 396, 450, 1114, 1795, 2379, 2727, 3335
BsmAI GTCTC 4 cut(s) 405, 1022, 2601, 3422
BsmFI GGGAC 4 cut(s) 795, 1055, 1900, 3331
BsmI GAATGC 2 cut(s) 2833, 3109
BsoBI CYCGRG 2 cut(s) 654, 1914
Bsp119I TTCGAA 1 cut(s) 3551
Bsp1286I GDGCHC 6 cut(s) 252, 436, 1051, 1915, 2061, 2485
Bsp1720I GCTNAGC 1 cut(s) 1863
Bsp19I CCATGG 2 cut(s) 395, 2373
Bsp68I TCGCGA 1 cut(s) 489
BspCNI CTCAG 5 cut(s) 1273, 1549, 1684, 3041, 3583
BspFNI CGCG 5 cut(s) 323, 466, 489, 561, 3625
BspHI TCATGA 2 cut(s) 436, 2398
BspLI GGNNCC 9 cut(s) 714, 1353, 1390, 1608, 1935, 2573, 2856, 3018, 3149
BspMAI CTGCAG 2 cut(s) 259, 1321
BspMI ACCTGC 1 cut(s) 2536
BspOI GCTAGC 1 cut(s) 3305
BspPI GGATC 4 cut(s) 675, 1163, 1928, 1941
BspQI GCTCTTC 3 cut(s) 654, 1132, 2754
BspT104I TTCGAA 1 cut(s) 3551
BspT107I GGYRCC 2 cut(s) 3016, 3147
BspTI CTTAAG 1 cut(s) 857
BsrDI GCAATG 5 cut(s) 869, 1135, 1959, 2918, 3302
BsrFI RCCGGY 1 cut(s) 692
BsrI ACTGG 3 cut(s) 149, 1784, 2194
BssAI RCCGGY 1 cut(s) 692
BssECI CCNNGG 9 cut(s) 395, 707, 1068, 1272, 2033, 2373, 2575, 2721, 3125
BssNAI GTATAC 1 cut(s) 2306
BssNI GRCGYC 2 cut(s) 1889, 3148
BssSI CACGAG 1 cut(s) 1050
BssT1I CCWWGG 4 cut(s) 395, 1272, 2373, 2575
Bst1107I GTATAC 1 cut(s) 2306
Bst2BI CACGAG 1 cut(s) 1050
Bst2UI CCWGG 4 cut(s) 708, 796, 1368, 3543
Bst4CI ACNGT 6 cut(s) 641, 877, 1989, 2114, 2679, 3129
Bst6I CTCTTC 9 cut(s) 198, 238, 654, 1132, 1317, 1779, 2112, 2168, 2754
BstACI GRCGYC 2 cut(s) 1889, 3148
BstAFI CTTAAG 1 cut(s) 857
BstBAI YACGTR 2 cut(s) 1622, 2585
BstBI TTCGAA 1 cut(s) 3551
BstC8I GCNNGC 8 cut(s) 801, 1108, 2354, 3221, 3303, 3307, 3408, 3448
BstDSI CCRYGG 3 cut(s) 395, 2373, 3125
BstENI CCTNNNNNAGG 1 cut(s) 1793
BstF5I GGATG 4 cut(s) 405, 1291, 2137, 2817
BstFNI CGCG 5 cut(s) 323, 466, 489, 561, 3625
BstH2I RGCGCY 2 cut(s) 1126, 3151
BstHHI GCGC 4 cut(s) 561, 1125, 3150, 3283
BstMAI GTCTC 4 cut(s) 405, 1022, 2601, 3422
BstMCI CGRYCG 1 cut(s) 565
BstMWI GCNNNNNNNGC 6 cut(s) 146, 332, 440, 1970, 2330, 3431
BstNI CCWGG 4 cut(s) 708, 796, 1368, 3543
BstNSI RCATGY 4 cut(s) 2481, 3290, 3309, 3541
BstSCI CCNGG 5 cut(s) 706, 794, 1366, 1384, 3541
BstSFI CTRYAG 3 cut(s) 255, 1317, 1611
BstUI CGCG 5 cut(s) 323, 466, 489, 561, 3625
BstV1I GCAGC 7 cut(s) 124, 2131, 2673, 2678, 2756, 3193, 3514
BstV2I GAAGAC 1 cut(s) 1517
BstX2I RGATCY 1 cut(s) 1933
BstXI CCANNNNNNTGG 1 cut(s) 207
BstYI RGATCY 1 cut(s) 1933
BstZ17I GTATAC 1 cut(s) 2306
BsuI GTATCC 3 cut(s) 467, 3047, 3209
BtgI CCRYGG 3 cut(s) 395, 2373, 3125
BtgZI GCGATG 1 cut(s) 504
BtrI CACGTC 1 cut(s) 1334
BtsCI GGATG 4 cut(s) 405, 1291, 2137, 2817
BtsI GCAGTG 1 cut(s) 1314
BtsIMutI CAGTG 2 cut(s) 1314, 1777
BtuMI TCGCGA 1 cut(s) 489
BveI ACCTGC 1 cut(s) 2536
Cac8I GCNNGC 8 cut(s) 801, 1108, 2354, 3221, 3303, 3307, 3408, 3448
CciI TCATGA 2 cut(s) 436, 2398
CfoI GCGC 4 cut(s) 561, 1125, 3150, 3283
Cfr10I RCCGGY 1 cut(s) 692
Cfr13I GGNCC 8 cut(s) 713, 910, 1351, 1370, 1607, 2572, 2718, 2916
CseI GACGC 3 cut(s) 832, 1897, 3609
Csp6I GTAC 6 cut(s) 189, 704, 2178, 2250, 2440, 3228
CspCI CAANNNNNGTGG 2 cut(s) 722, 757
CviQI GTAC 6 cut(s) 189, 704, 2178, 2250, 2440, 3228
DinI GGCGCC 1 cut(s) 3149
DraI TTTAAA 2 cut(s) 1854, 2739
EaeI YGGCCR 2 cut(s) 626, 1557
Eam1104I CTCTTC 9 cut(s) 198, 238, 654, 1132, 1317, 1779, 2112, 2168, 2754
EarI CTCTTC 9 cut(s) 198, 238, 654, 1132, 1317, 1779, 2112, 2168, 2754
Ecl136II GAGCTC 1 cut(s) 1049
Eco130I CCWWGG 4 cut(s) 395, 1272, 2373, 2575
Eco147I AGGCCT 1 cut(s) 842
Eco24I GRGCYC 2 cut(s) 436, 1051
Eco47I GGWCC 6 cut(s) 713, 1351, 1370, 1607, 2718, 2916
Eco53kI GAGCTC 1 cut(s) 1049
Eco57I CTGAAG 4 cut(s) 513, 1002, 1206, 2133
Eco88I CYCGRG 2 cut(s) 654, 1914
EcoICRI GAGCTC 1 cut(s) 1049
EcoNI CCTNNNNNAGG 1 cut(s) 1793
EcoO109I RGGNCCY 4 cut(s) 713, 1607, 2572, 2718
EcoRII CCWGG 4 cut(s) 706, 794, 1366, 3541
EcoT14I CCWWGG 4 cut(s) 395, 1272, 2373, 2575
EcoT22I ATGCAT 2 cut(s) 1137, 2671
EcoT38I GRGCYC 2 cut(s) 436, 1051
EgeI GGCGCC 1 cut(s) 3149
EheI GGCGCC 1 cut(s) 3149
ErhI CCWWGG 4 cut(s) 395, 1272, 2373, 2575
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 1111, 1143
FaqI GGGAC 4 cut(s) 795, 1055, 1900, 3331
FauI CCCGC 2 cut(s) 1115, 2371
FblI GTMKAC 5 cut(s) 318, 788, 2305, 2474, 2633
FokI GGATG 4 cut(s) 412, 1298, 2144, 2824
FriOI GRGCYC 2 cut(s) 436, 1051
FspBI CTAG 7 cut(s) 245, 1359, 3062, 3302, 3333, 3411, 3637
FspI TGCGCA 1 cut(s) 3282
GlaI GCGC 4 cut(s) 560, 1124, 3149, 3282
GsaI CCCAGC 1 cut(s) 1411
HaeII RGCGCY 2 cut(s) 1126, 3151
HapII CCGG 3 cut(s) 693, 1386, 2948
HgaI GACGC 3 cut(s) 832, 1897, 3609
HhaI GCGC 4 cut(s) 561, 1125, 3150, 3283
Hin1I GRCGYC 2 cut(s) 1889, 3148
Hin6I GCGC 4 cut(s) 559, 1123, 3148, 3281
HinP1I GCGC 4 cut(s) 559, 1123, 3148, 3281
HincII GTYRAC 3 cut(s) 789, 924, 3565
HindII GTYRAC 3 cut(s) 789, 924, 3565
HindIII AAGCTT 1 cut(s) 3455
HinfI GANTC 6 cut(s) 115, 125, 157, 1327, 1827, 3248
HpaII CCGG 3 cut(s) 693, 1386, 2948
HphI GGTGA 6 cut(s) 74, 505, 2102, 2204, 2798, 2812
Hpy99I CGWCG 6 cut(s) 348, 585, 1335, 1665, 2304, 3625
HpyAV CCTTC 8 cut(s) 284, 1365, 1511, 2321, 2460, 2557, 3030, 3489
HpyCH4III ACNGT 6 cut(s) 641, 877, 1989, 2114, 2679, 3129
HpyCH4IV ACGT 7 cut(s) 343, 1333, 1621, 2227, 2302, 2584, 2872
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 332, 440, 1970, 2330, 3431
HpySE526I ACGT 7 cut(s) 343, 1333, 1621, 2227, 2302, 2584, 2872
Hsp92I GRCGYC 2 cut(s) 1889, 3148
HspAI GCGC 4 cut(s) 559, 1123, 3148, 3281
KasI GGCGCC 1 cut(s) 3147
LguI GCTCTTC 3 cut(s) 654, 1132, 2754
LmnI GCTCC 6 cut(s) 12, 599, 1237, 1394, 2658, 2860
Lsp1109I GCAGC 7 cut(s) 124, 2131, 2673, 2678, 2756, 3193, 3514
LweI GCATC 4 cut(s) 481, 1030, 1993, 2678
MaeI CTAG 7 cut(s) 245, 1359, 3062, 3302, 3333, 3411, 3637
MaeII ACGT 7 cut(s) 343, 1333, 1621, 2227, 2302, 2584, 2872
MaeIII GTNAC 3 cut(s) 820, 2192, 3265
MfeI CAATTG 3 cut(s) 1548, 2319, 2985
MflI RGATCY 1 cut(s) 1933
MhlI GDGCHC 6 cut(s) 252, 436, 1051, 1915, 2061, 2485
MlsI TGGCCA 2 cut(s) 628, 1559
MluI ACGCGT 1 cut(s) 464
MluNI TGGCCA 2 cut(s) 628, 1559
Mly113I GGCGCC 1 cut(s) 3148
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 3 cut(s) 339, 545, 1480
Mox20I TGGCCA 2 cut(s) 628, 1559
Mph1103I ATGCAT 2 cut(s) 1137, 2671
MroXI GAANNNNTTC 2 cut(s) 1326, 2967
MscI TGGCCA 2 cut(s) 628, 1559
MslI CAYNNNNRTG 2 cut(s) 818, 1101
Msp20I TGGCCA 2 cut(s) 628, 1559
MspA1I CMGCKG 1 cut(s) 803
MspCI CTTAAG 1 cut(s) 857
MspI CCGG 3 cut(s) 693, 1386, 2948
MspR9I CCNGG 5 cut(s) 708, 796, 1368, 1386, 3543
MunI CAATTG 3 cut(s) 1548, 2319, 2985
Mva1269I GAATGC 2 cut(s) 2833, 3109
MvaI CCWGG 4 cut(s) 708, 796, 1368, 3543
MvnI CGCG 5 cut(s) 323, 466, 489, 561, 3625
MwoI GCNNNNNNNGC 6 cut(s) 146, 332, 440, 1970, 2330, 3431
NarI GGCGCC 1 cut(s) 3148
NciI CCSGG 1 cut(s) 1386
NcoI CCATGG 2 cut(s) 395, 2373
NheI GCTAGC 1 cut(s) 3301
NlaIV GGNNCC 9 cut(s) 714, 1353, 1390, 1608, 1935, 2573, 2856, 3018, 3149
NmeAIII GCCGAG 1 cut(s) 2058
NmuCI GTSAC 3 cut(s) 820, 2192, 3265
NruI TCGCGA 1 cut(s) 489
NsbI TGCGCA 1 cut(s) 3282
NsiI ATGCAT 2 cut(s) 1137, 2671
NspI RCATGY 4 cut(s) 2481, 3290, 3309, 3541
NspV TTCGAA 1 cut(s) 3551
PaeI GCATGC 1 cut(s) 3309
PaeR7I CTCGAG 1 cut(s) 1914
PagI TCATGA 2 cut(s) 436, 2398
PceI AGGCCT 1 cut(s) 842
PciI ACATGT 2 cut(s) 2477, 3286
PciSI GCTCTTC 3 cut(s) 654, 1132, 2754
PcsI WCGNNNNNNNCGW 1 cut(s) 1520
PctI GAATGC 2 cut(s) 2833, 3109
PdmI GAANNNNTTC 2 cut(s) 1326, 2967
PfeI GAWTC 5 cut(s) 115, 157, 1327, 1827, 3248
PflMI CCANNNNNTGG 1 cut(s) 396
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 3151
PpsI GAGTC 1 cut(s) 119
Ppu21I YACGTR 2 cut(s) 1622, 2585
PpuMI RGGWCCY 3 cut(s) 713, 1607, 2718
PscI ACATGT 2 cut(s) 2477, 3286
PshBI ATTAAT 2 cut(s) 1881, 3008
PsiI TTATAA 1 cut(s) 1206
Psp124BI GAGCTC 1 cut(s) 1051
Psp1406I AACGTT 2 cut(s) 2227, 2872
Psp5II RGGWCCY 3 cut(s) 713, 1607, 2718
Psp6I CCWGG 4 cut(s) 706, 794, 1366, 3541
PspFI CCCAGC 1 cut(s) 1407
PspGI CCWGG 4 cut(s) 706, 794, 1366, 3541
PspN4I GGNNCC 9 cut(s) 714, 1353, 1390, 1608, 1935, 2573, 2856, 3018, 3149
PspPI GGNCC 8 cut(s) 713, 910, 1351, 1370, 1607, 2572, 2718, 2916
PspPPI RGGWCCY 3 cut(s) 713, 1607, 2718
PspXI VCTCGAGB 1 cut(s) 1914
PstI CTGCAG 2 cut(s) 259, 1321
PsuI RGATCY 1 cut(s) 1933
PvuII CAGCTG 1 cut(s) 803
RruI TCGCGA 1 cut(s) 489
RsaI GTAC 6 cut(s) 190, 705, 2179, 2251, 2441, 3229
RsaNI GTAC 6 cut(s) 189, 704, 2178, 2250, 2440, 3228
RseI CAYNNNNRTG 2 cut(s) 818, 1101
SacI GAGCTC 1 cut(s) 1051
SalI GTCGAC 1 cut(s) 787
SapI GCTCTTC 3 cut(s) 654, 1132, 2754
Sau96I GGNCC 8 cut(s) 713, 910, 1351, 1370, 1607, 2572, 2718, 2916
ScaI AGTACT 1 cut(s) 2179
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 5 cut(s) 708, 796, 1368, 1386, 3543
SduI GDGCHC 6 cut(s) 252, 436, 1051, 1915, 2061, 2485
SfaNI GCATC 4 cut(s) 481, 1030, 1993, 2678
SfcI CTRYAG 3 cut(s) 255, 1317, 1611
SfoI GGCGCC 1 cut(s) 3149
Sfr274I CTCGAG 1 cut(s) 1914
SfuI TTCGAA 1 cut(s) 3551
SinI GGWCC 6 cut(s) 713, 1351, 1370, 1607, 2718, 2916
SlaI CTCGAG 1 cut(s) 1914
SmiMI CAYNNNNRTG 2 cut(s) 818, 1101
SmlI CTYRAG 5 cut(s) 857, 1822, 1914, 2591, 3506
SmoI CTYRAG 5 cut(s) 857, 1822, 1914, 2591, 3506
SpeI ACTAGT 2 cut(s) 244, 3332
SphI GCATGC 1 cut(s) 3309
SseBI AGGCCT 1 cut(s) 842
SspDI GGCGCC 1 cut(s) 3147
SspI AATATT 2 cut(s) 22, 3400
SspMI CTAG 7 cut(s) 245, 1359, 3062, 3302, 3333, 3411, 3637
SstI GAGCTC 1 cut(s) 1051
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 5 cut(s) 706, 794, 1366, 1384, 3541
StyI CCWWGG 4 cut(s) 395, 1272, 2373, 2575
TaaI ACNGT 6 cut(s) 641, 877, 1989, 2114, 2679, 3129
TaiI ACGT 7 cut(s) 346, 1336, 1624, 2230, 2305, 2587, 2875
TatI WGTACW 3 cut(s) 2177, 2439, 3227
TauI GCSGC 3 cut(s) 326, 2545, 2960
TfiI GAWTC 5 cut(s) 115, 157, 1327, 1827, 3248
TscAI CASTG 2 cut(s) 1321, 1784
TseFI GTSAC 3 cut(s) 820, 2192, 3265
TseI GCWGC 7 cut(s) 137, 2144, 2661, 2691, 2744, 3181, 3527
Tsp45I GTSAC 3 cut(s) 820, 2192, 3265
TspGWI ACGGA 2 cut(s) 1529, 1740
TspRI CASTG 2 cut(s) 1321, 1784
Van91I CCANNNNNTGG 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 857
VpaK11BI GGWCC 6 cut(s) 713, 1351, 1370, 1607, 2718, 2916
VspI ATTAAT 2 cut(s) 1881, 3008
XagI CCTNNNNNAGG 1 cut(s) 1793
XceI RCATGY 4 cut(s) 2481, 3290, 3309, 3541
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 1914
XmiI GTMKAC 5 cut(s) 318, 788, 2305, 2474, 2633
XmnI GAANNNNTTC 2 cut(s) 1326, 2967
XspI CTAG 7 cut(s) 245, 1359, 3062, 3302, 3333, 3411, 3637
ZrmI AGTACT 1 cut(s) 2179
Zsp2I ATGCAT 2 cut(s) 1137, 2671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.