pycom07g19370

Glycine-rich protein A3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013211
Physical Location & Seq
Reverse (-)
21726988 .. 21728505
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19370.1

Sequence Viewer

Length: 570 bp
ATGGGTGGTGGGAAATACAAGCATCACGACGACGAAGCAGACAGGGGGCTTTTTAGCCACCTTGCACACGGAGGAGGTTCGTATCCACCTCAGCACGGGCACCCACCGCAGCAGGGCGGCTACCCTCCTCAAGGGTACCCGCCCCATCAGGGTGGCTACCCTCCGCAAGGGTATCCGCCCCAGCAGGGTGGCTACCCTCCGCAGCAGGGGTATCCTCCTCAAGGTTACCCGCCTCAACAGGGGTACCCACCAGCTGGGCATCCTCAGCCTGGCCATCACGGCTCATCTGGACACCATGGTGCAGGGGCGTTGCTGGCTGGTGGTGCGGTCGCTGCTGCAGCTGCTGTCGGTGCTCACCATCTCACTCAAGGTGGTCACCATGGCCAAGGTTCTCACGGTTCTCATGGTATTCTCCCTGGCAGTTACGGTGCTCACAATGTTGGTCACGGCTTTGCATCACATGGCGGGAAGCATGGGAAGCACGGCAAGCATAAGAACGGCAAGTTCGGGAAGCATAAGAAAGGCAAGTTCGGCAAGCACGGTGGAGGCAAGTTCAAGAAATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XYPPX

Protein Analysis

190

Amino Acids

19.37

Weight (kDa)

9.9

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19200
fragaria_vesca FvH4_7g23640
malus_domestica MD01G1142300.v1.1 MD07G1208000.v1.1
prunus_persica Prupe.2G243300_v2.0.a1
pyrus_communis pycom01g16250 pycom07g19370
rosa_chinensis RchiOBHm_Chr1g0368911
rosa_laevigata RLG00000027177
rosa_multiflora Rmu_sc0004250.1_g000044 Rmu_sc0012648.1_g000003
rosa_roxburghii Rroxscaffold_4G00288210
rosa_rugosa Rorug01G0345800
rosa_samantha Rh1AG352800 Rh1BG316300 Rh1CG331000 Rh1DG347800
rosa_wichuraiana Rw1G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 135, 243
AccB1I GGYRCC 3 cut(s) 99, 135, 243
AccB7I CCANNNNNTGG 1 cut(s) 254
AciI CCGC 9 cut(s) 107, 117, 140, 164, 176, 200, 230, 326, 465
AcoI YGGCCR 2 cut(s) 271, 382
AfaI GTAC 2 cut(s) 137, 245
AgsI TTSAA 1 cut(s) 556
AjnI CCWGG 2 cut(s) 268, 415
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 2 cut(s) 254, 341
AluI AGCT 2 cut(s) 254, 341
Alw21I GWGCWC 2 cut(s) 355, 433
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 2 cut(s) 271, 382
ApeKI GCWGC 6 cut(s) 109, 202, 332, 335, 338, 341
Asp718I GGTACC 2 cut(s) 135, 243
AsuHPI GGTGA 2 cut(s) 347, 368
BaeGI GKGCMC 1 cut(s) 102
BaeI ACNNNNGTAYC 2 cut(s) 227, 260
BalI TGGCCA 2 cut(s) 273, 384
BanI GGYRCC 3 cut(s) 99, 135, 243
Bbv12I GWGCWC 2 cut(s) 355, 433
BbvCI CCTCAGC 2 cut(s) 90, 264
BbvI GCAGC 6 cut(s) 121, 214, 319, 322, 328, 350
BccI CCATC 3 cut(s) 153, 282, 366
BceAI ACGGC 4 cut(s) 295, 463, 499, 514
BciT130I CCWGG 2 cut(s) 270, 417
BciVI GTATCC 3 cut(s) 93, 183, 222
BfmI CTRYAG 1 cut(s) 336
BfuI GTATCC 3 cut(s) 93, 183, 222
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 7 cut(s) 110, 118, 203, 333, 336, 339, 342
BlsI GCNGC 7 cut(s) 111, 119, 204, 334, 337, 340, 343
Bme1390I CCNGG 2 cut(s) 270, 417
BmiI GGNNCC 3 cut(s) 101, 137, 245
BmrFI CCNGG 2 cut(s) 270, 417
BmsI GCATC 3 cut(s) 31, 268, 464
Bpu10I CCTNAGC 2 cut(s) 90, 264
BpuEI CTTGAG 3 cut(s) 114, 204, 351
BsaJI CCNNGG 4 cut(s) 295, 379, 385, 415
BseBI CCWGG 2 cut(s) 270, 417
BseDI CCNNGG 4 cut(s) 295, 379, 385, 415
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 104, 278
BseRI GAGGAG 3 cut(s) 87, 117, 207
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 6 cut(s) 121, 214, 319, 322, 328, 350
BseYI CCCAGC 2 cut(s) 180, 254
BsgI GTGCAG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 273, 384
BshNI GGYRCC 3 cut(s) 99, 135, 243
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 2 cut(s) 355, 433
BsnI GGCC 2 cut(s) 273, 384
Bsp1286I GDGCHC 3 cut(s) 102, 355, 433
Bsp19I CCATGG 2 cut(s) 295, 379
BspACI CCGC 9 cut(s) 107, 117, 140, 164, 176, 200, 230, 326, 465
BspANI GGCC 2 cut(s) 273, 384
BspCNI CTCAG 2 cut(s) 103, 277
BspLI GGNNCC 3 cut(s) 101, 137, 245
BspMAI CTGCAG 1 cut(s) 340
BspT107I GGYRCC 3 cut(s) 99, 135, 243
BssECI CCNNGG 4 cut(s) 295, 379, 385, 415
BssT1I CCWWGG 3 cut(s) 295, 379, 385
Bst2UI CCWGG 2 cut(s) 270, 417
Bst4CI ACNGT 3 cut(s) 398, 428, 542
BstC8I GCNNGC 3 cut(s) 315, 488, 536
BstDEI CTNAG 2 cut(s) 90, 264
BstDSI CCRYGG 2 cut(s) 295, 379
BstEII GGTNACC 2 cut(s) 224, 374
BstENI CCTNNNNNAGG 3 cut(s) 129, 165, 219
BstF5I GGATG 1 cut(s) 259
BstMCI CGRYCG 1 cut(s) 330
BstNI CCWGG 2 cut(s) 270, 417
BstPI GGTNACC 2 cut(s) 224, 374
BstSCI CCNGG 2 cut(s) 268, 415
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 6 cut(s) 121, 214, 319, 322, 328, 350
BstXI CCANNNNNNTGG 2 cut(s) 152, 188
BsuI GTATCC 3 cut(s) 93, 183, 222
BsuRI GGCC 2 cut(s) 273, 384
BtgI CCRYGG 2 cut(s) 295, 379
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 315, 488, 536
CaiI CAGNNNCTG 1 cut(s) 344
Csp6I GTAC 2 cut(s) 136, 244
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 5 cut(s) 296, 380, 404, 461, 473
CviQI GTAC 2 cut(s) 136, 244
DdeI CTNAG 2 cut(s) 90, 264
EaeI YGGCCR 2 cut(s) 271, 382
EciI GGCGGA 1 cut(s) 165
Eco130I CCWWGG 3 cut(s) 295, 379, 385
Eco91I GGTNACC 2 cut(s) 224, 374
EcoNI CCTNNNNNAGG 3 cut(s) 129, 165, 219
EcoO65I GGTNACC 2 cut(s) 224, 374
EcoRII CCWGG 2 cut(s) 268, 415
EcoT14I CCWWGG 3 cut(s) 295, 379, 385
ErhI CCWWGG 3 cut(s) 295, 379, 385
FaeI CATG 5 cut(s) 299, 383, 407, 464, 476
FaiI YATR 7 cut(s) 297, 381, 405, 462, 474, 492, 516
FatI CATG 5 cut(s) 295, 379, 403, 460, 472
FauI CCCGC 3 cut(s) 147, 237, 458
Fnu4HI GCNGC 7 cut(s) 110, 118, 203, 333, 336, 339, 342
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 7 cut(s) 110, 118, 203, 333, 336, 339, 342
GluI GCNGC 7 cut(s) 110, 118, 203, 333, 336, 339, 342
GsaI CCCAGC 2 cut(s) 184, 258
HaeIII GGCC 2 cut(s) 273, 384
Hin1II CATG 5 cut(s) 299, 383, 407, 464, 476
HphI GGTGA 2 cut(s) 347, 368
Hpy188III TCNNGA 4 cut(s) 26, 288, 508, 556
Hpy99I CGWCG 2 cut(s) 32, 35
HpyCH4III ACNGT 3 cut(s) 398, 428, 542
HpyCH4V TGCA 4 cut(s) 65, 302, 338, 455
HpyF3I CTNAG 2 cut(s) 90, 264
Hsp92II CATG 5 cut(s) 299, 383, 407, 464, 476
KpnI GGTACC 2 cut(s) 139, 247
Lsp1109I GCAGC 6 cut(s) 121, 214, 319, 322, 328, 350
LweI GCATC 3 cut(s) 31, 268, 464
MaeIII GTNAC 4 cut(s) 224, 374, 422, 443
MhlI GDGCHC 3 cut(s) 102, 355, 433
MlsI TGGCCA 2 cut(s) 273, 384
MluNI TGGCCA 2 cut(s) 273, 384
Mox20I TGGCCA 2 cut(s) 273, 384
MscI TGGCCA 2 cut(s) 273, 384
MslI CAYNNNNRTG 2 cut(s) 150, 297
Msp20I TGGCCA 2 cut(s) 273, 384
MspA1I CMGCKG 2 cut(s) 254, 341
MspR9I CCNGG 2 cut(s) 270, 417
MvaI CCWGG 2 cut(s) 270, 417
NcoI CCATGG 2 cut(s) 295, 379
NlaIII CATG 5 cut(s) 299, 383, 407, 464, 476
NlaIV GGNNCC 3 cut(s) 101, 137, 245
NmuCI GTSAC 2 cut(s) 374, 443
OliI CACNNNNGTG 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 7 cut(s) 111, 119, 204, 334, 337, 340, 343
Psp6I CCWGG 2 cut(s) 268, 415
PspEI GGTNACC 2 cut(s) 224, 374
PspFI CCCAGC 2 cut(s) 180, 254
PspGI CCWGG 2 cut(s) 268, 415
PspN4I GGNNCC 3 cut(s) 101, 137, 245
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 344
PvuII CAGCTG 2 cut(s) 254, 341
RsaI GTAC 2 cut(s) 137, 245
RsaNI GTAC 2 cut(s) 136, 244
RseI CAYNNNNRTG 2 cut(s) 150, 297
SatI GCNGC 7 cut(s) 110, 118, 203, 333, 336, 339, 342
ScrFI CCNGG 2 cut(s) 270, 417
SduI GDGCHC 3 cut(s) 102, 355, 433
SetI ASST 8 cut(s) 63, 79, 91, 226, 256, 343, 373, 391
SfaNI GCATC 3 cut(s) 31, 268, 464
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 150, 297
SmlI CTYRAG 3 cut(s) 129, 219, 366
SmoI CTYRAG 3 cut(s) 129, 219, 366
SsiI CCGC 9 cut(s) 107, 117, 140, 164, 176, 200, 230, 326, 465
StyD4I CCNGG 2 cut(s) 268, 415
StyI CCWWGG 3 cut(s) 295, 379, 385
TaaI ACNGT 3 cut(s) 398, 428, 542
TauI GCSGC 1 cut(s) 120
TseFI GTSAC 2 cut(s) 374, 443
TseI GCWGC 6 cut(s) 109, 202, 332, 335, 338, 341
Tsp45I GTSAC 2 cut(s) 374, 443
TspGWI ACGGA 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 254
XagI CCTNNNNNAGG 3 cut(s) 129, 165, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.