Rmu_sc0004250.1_g000044

Glycine-rich protein A3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004250.1
OG0013211
Physical Location & Seq
Forward (+)
215618 .. 216927
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004250.1_g000044.1.cds

Sequence Viewer

Length: 552 bp
atgggtggtggtaaggataagcatcaaggtggtggcagtggtgaagaaactgacaagggccttttcggtagtcttctacacggcgttgccggaggacagcatggctacccacctcaacaacatggctaccctcctcaggggtatccaccgcaacagggataccctccacagggctatccaccgcagcagggtggatatcccccacaagggtacccgccagctgggtatccgccgcagcagggctacgctccacaagggtacccgcccgccgctcacggcggtcattctggaggaggccatggtatggggggaatactagcagggggtgcagctgctgctgcagccgcatacggcgctcaccaattgacaggccatcatggtcaaggctctcaccaagtctcccatggcggctactatccatctcaaggcatgccagggttcggggggcacggcaaggttaagcatggtaaattcgggaagcatgggggcaagcacggcaagtttgggaagcacgggaagcatggtggaggcaagttcaagaagtggaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XYPPX

Protein Analysis

183

Amino Acids

18.46

Weight (kDa)

9.75

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19200
fragaria_vesca FvH4_7g23640
malus_domestica MD01G1142300.v1.1 MD07G1208000.v1.1
prunus_persica Prupe.2G243300_v2.0.a1
pyrus_communis pycom01g16250 pycom07g19370
rosa_chinensis RchiOBHm_Chr1g0368911
rosa_laevigata RLG00000027177
rosa_multiflora Rmu_sc0004250.1_g000044 Rmu_sc0012648.1_g000003
rosa_roxburghii Rroxscaffold_4G00288210
rosa_rugosa Rorug01G0345800
rosa_samantha Rh1AG352800 Rh1BG316300 Rh1CG331000 Rh1DG347800
rosa_wichuraiana Rw1G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 210, 258
AccB1I GGYRCC 2 cut(s) 210, 258
AccB7I CCANNNNNTGG 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 470
AfaI GTAC 2 cut(s) 212, 260
AgsI TTSAA 1 cut(s) 538
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 2 cut(s) 221, 332
AluI AGCT 2 cut(s) 221, 332
Alw26I GTCTC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 3 cut(s) 58, 295, 370
ApeKI GCWGC 7 cut(s) 184, 235, 329, 332, 335, 338, 341
ApoI RAATTY 1 cut(s) 470
Asp718I GGTACC 2 cut(s) 210, 258
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 53, 350, 383
AxyI CCTNAGG 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 450
BaeI ACNNNNGTAYC 4 cut(s) 194, 227, 242, 275
BanI GGYRCC 2 cut(s) 210, 258
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
BccI CCATC 2 cut(s) 381, 427
BceAI ACGGC 5 cut(s) 97, 292, 367, 466, 511
BciT130I CCWGG 1 cut(s) 435
BciVI GTATCC 3 cut(s) 152, 153, 237
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 3 cut(s) 152, 153, 237
Bme1390I CCNGG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 212, 260
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 298, 403, 434
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse21I CCTNAGG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 298, 403, 434
BseJI GATNNNNATC 1 cut(s) 21
BseMII CTCAG 1 cut(s) 149
BseRI GAGGAG 2 cut(s) 123, 306
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 3 cut(s) 60, 297, 372
BshNI GGYRCC 2 cut(s) 210, 258
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 3 cut(s) 60, 297, 372
Bsp1286I GDGCHC 1 cut(s) 450
Bsp19I CCATGG 2 cut(s) 298, 403
BspANI GGCC 3 cut(s) 60, 297, 372
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 212, 260
BspMAI CTGCAG 1 cut(s) 343
BspT107I GGYRCC 2 cut(s) 210, 258
BsrBI CCGCTC 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 298, 403, 434
BssT1I CCWWGG 2 cut(s) 298, 403
Bst2UI CCWGG 1 cut(s) 435
BstAPI GCANNNNNTGC 2 cut(s) 326, 335
BstC8I GCNNGC 4 cut(s) 219, 267, 431, 491
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 2 cut(s) 298, 403
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 403
BstMWI GCNNNNNNNGC 8 cut(s) 326, 335, 338, 341, 344, 353, 495, 517
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 450
BstV1I GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
BstV2I GAAGAC 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 135
BsuI GTATCC 3 cut(s) 152, 153, 237
BsuRI GGCC 3 cut(s) 60, 297, 372
BtgI CCRYGG 2 cut(s) 298, 403
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 219, 267, 431, 491
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 211, 259
CviAII CATG 9 cut(s) 101, 122, 299, 377, 404, 430, 464, 482, 521
CviQI GTAC 2 cut(s) 211, 259
DdeI CTNAG 1 cut(s) 135
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 298, 403
Eco32I GATATC 1 cut(s) 197
Eco81I CCTNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 433
EcoRV GATATC 1 cut(s) 197
EcoT14I CCWWGG 2 cut(s) 298, 403
ErhI CCWWGG 2 cut(s) 298, 403
FaeI CATG 9 cut(s) 104, 125, 302, 380, 407, 433, 467, 485, 524
FatI CATG 9 cut(s) 100, 121, 298, 376, 403, 429, 463, 481, 520
FauI CCCGC 3 cut(s) 222, 270, 274
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 355
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 3 cut(s) 60, 297, 372
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 356
Hin1II CATG 9 cut(s) 104, 125, 302, 380, 407, 433, 467, 485, 524
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HpaII CCGG 1 cut(s) 90
HphI GGTGA 3 cut(s) 53, 350, 383
Hpy188III TCNNGA 3 cut(s) 288, 475, 538
HpyCH4V TGCA 2 cut(s) 329, 341
HpyF10VI GCNNNNNNNGC 8 cut(s) 326, 335, 338, 341, 344, 353, 495, 517
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 9 cut(s) 104, 125, 302, 380, 407, 433, 467, 485, 524
HspAI GCGC 1 cut(s) 354
KpnI GGTACC 2 cut(s) 214, 262
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 317
MbiI CCGCTC 1 cut(s) 272
MboII GAAGA 2 cut(s) 56, 65
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 2 cut(s) 362, 470
MnlI CCTC 8 cut(s) 86, 123, 141, 144, 174, 284, 287, 521
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 2 cut(s) 221, 332
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 435
MunI CAATTG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 8 cut(s) 326, 335, 338, 341, 344, 353, 495, 517
NcoI CCATGG 2 cut(s) 298, 403
NlaIII CATG 9 cut(s) 104, 125, 302, 380, 407, 433, 467, 485, 524
NlaIV GGNNCC 2 cut(s) 212, 260
NspI RCATGY 1 cut(s) 433
PaeI GCATGC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 212, 260
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 335
PvuII CAGCTG 2 cut(s) 221, 332
RsaI GTAC 2 cut(s) 212, 260
RsaNI GTAC 2 cut(s) 211, 259
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 459
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 450
SetI ASST 5 cut(s) 31, 115, 223, 334, 459
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
SphI GCATGC 1 cut(s) 433
Sse9I AATT 2 cut(s) 362, 470
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 2 cut(s) 298, 403
TasI AATT 2 cut(s) 362, 470
TauI GCSGC 4 cut(s) 235, 272, 347, 411
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 1 cut(s) 43
TseI GCWGC 7 cut(s) 184, 235, 329, 332, 335, 338, 341
TspRI CASTG 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 304
XapI RAATTY 1 cut(s) 470
XceI RCATGY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.