FvH4_7g23640

Glycine-rich protein A3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013211
Physical Location & Seq
Reverse (-)
18404513 .. 18406549
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23640.t1

Sequence Viewer

Length: 573 bp
ATGGGTGGTGGAAAAGATCAGCATCAAGGTGGTGGAAGTGGTGAAGAAACTGACAAGGGTCTTTTCGGTAGTCTTCTTCACGGCGTTGCCGGAGGACAACATGGCTATTCTCAACAACATGGATACCCTCAACAGGGGTATCCACCGCAACATGGGTACCCTCCTCAACAGGGGTATCCACCGCAGCAGGGTGGATATCCTCCACAAGGGTACCCGCCATCTGGGTATCCGCCGCAGCAGGGTGGATATCCTCCTCAAGGGTACCCGCCCGCCGCTCACGGCGGTCATTCTGGAGGAGGCAGCCATGGAATGGGGGGAATTCTAGCTGGGGGTGCAGCTGCTGCTGCAGCCGCATACGGTGCTCACCAATTGACAGGCCATCACGGTCAAGGCTCTCACCAAGTTTCGCACGGCGGCTACAATCCATCTCACGGCATGCCAGGGTACGGGGGTCACGGCATGCCAGGGTACGGGGGTCACGGCAAGGTTAAGCATGGTAAATTCGGGAAGCATGGAGGCAAGCACGGCAAGTACGGGAAGCACGGTGGAGGCAAGTTCAAGAAGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XYPPX

Protein Analysis

191

Amino Acids

19.13

Weight (kDa)

9.6

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19200
fragaria_vesca FvH4_7g23640
malus_domestica MD01G1142300.v1.1 MD07G1208000.v1.1
prunus_persica Prupe.2G243300_v2.0.a1
pyrus_communis pycom01g16250 pycom07g19370
rosa_chinensis RchiOBHm_Chr1g0368911
rosa_laevigata RLG00000027177
rosa_multiflora Rmu_sc0004250.1_g000044 Rmu_sc0012648.1_g000003
rosa_roxburghii Rroxscaffold_4G00288210
rosa_rugosa Rorug01G0345800
rosa_samantha Rh1AG352800 Rh1BG316300 Rh1CG331000 Rh1DG347800
rosa_wichuraiana Rw1G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 156, 210, 261
AccB1I GGYRCC 3 cut(s) 156, 210, 261
AccB7I CCANNNNNTGG 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 275
AcsI RAATTY 2 cut(s) 318, 500
AfaI GTAC 6 cut(s) 158, 212, 263, 446, 470, 533
AgsI TTSAA 1 cut(s) 559
AjnI CCWGG 2 cut(s) 439, 463
AluBI AGCT 2 cut(s) 326, 338
AluI AGCT 2 cut(s) 326, 338
Alw21I GWGCWC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 8 cut(s) 184, 235, 300, 335, 338, 341, 344, 347
ApoI RAATTY 2 cut(s) 318, 500
Asp718I GGTACC 3 cut(s) 156, 210, 261
AsuHPI GGTGA 3 cut(s) 53, 356, 389
BanI GGYRCC 3 cut(s) 156, 210, 261
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 8 cut(s) 196, 247, 312, 325, 328, 331, 347, 359
BccI CCATC 3 cut(s) 226, 387, 433
BceAI ACGGC 7 cut(s) 97, 295, 427, 448, 472, 496, 541
BciT130I CCWGG 2 cut(s) 441, 465
BciVI GTATCC 4 cut(s) 116, 150, 186, 237
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 345
BfuI GTATCC 4 cut(s) 116, 150, 186, 237
Bme1390I CCNGG 2 cut(s) 441, 465
BmiI GGNNCC 3 cut(s) 158, 212, 263
BmrFI CCNGG 2 cut(s) 441, 465
BmsI GCATC 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 304, 440, 464
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 2 cut(s) 441, 465
BseDI CCNNGG 3 cut(s) 304, 440, 464
BseJI GATNNNNATC 1 cut(s) 21
BseRI GAGGAG 3 cut(s) 153, 243, 309
BseXI GCAGC 8 cut(s) 196, 247, 312, 325, 328, 331, 347, 359
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 1 cut(s) 378
BshNI GGYRCC 3 cut(s) 156, 210, 261
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 90
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 1 cut(s) 16
Bsp19I CCATGG 1 cut(s) 304
BspANI GGCC 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 158, 212, 263
BspMAI CTGCAG 1 cut(s) 349
BspT107I GGYRCC 3 cut(s) 156, 210, 261
BsrBI CCGCTC 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 304, 440, 464
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 2 cut(s) 441, 465
Bst4CI ACNGT 3 cut(s) 359, 386, 545
BstAPI GCANNNNNTGC 2 cut(s) 341, 359
BstC8I GCNNGC 4 cut(s) 270, 437, 461, 521
BstDSI CCRYGG 1 cut(s) 304
BstENI CCTNNNNNAGG 2 cut(s) 204, 255
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 7 cut(s) 332, 341, 344, 347, 350, 359, 525
BstNI CCWGG 2 cut(s) 441, 465
BstNSI RCATGY 2 cut(s) 439, 463
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 439, 463
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 8 cut(s) 196, 247, 312, 325, 328, 331, 347, 359
BstV2I GAAGAC 1 cut(s) 65
BsuI GTATCC 4 cut(s) 116, 150, 186, 237
BsuRI GGCC 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 304
Cac8I GCNNGC 4 cut(s) 270, 437, 461, 521
CaiI CAGNNNCTG 1 cut(s) 341
Csp6I GTAC 6 cut(s) 157, 211, 262, 445, 469, 532
CviAII CATG 8 cut(s) 101, 119, 152, 305, 436, 460, 494, 512
CviJI RGCY 8 cut(s) 105, 303, 326, 338, 350, 378, 393, 417
CviKI_1 RGCY 8 cut(s) 105, 303, 326, 338, 350, 378, 393, 417
CviQI GTAC 6 cut(s) 157, 211, 262, 445, 469, 532
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 304
Eco32I GATATC 2 cut(s) 197, 248
EcoNI CCTNNNNNAGG 2 cut(s) 204, 255
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 439, 463
EcoRV GATATC 2 cut(s) 197, 248
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 8 cut(s) 104, 122, 155, 308, 439, 463, 497, 515
FaiI YATR 9 cut(s) 102, 120, 153, 306, 355, 437, 461, 495, 513
FatI CATG 8 cut(s) 100, 118, 151, 304, 435, 459, 493, 511
FauI CCCGC 3 cut(s) 222, 273, 277
FspBI CTAG 1 cut(s) 323
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 90
Hin1II CATG 8 cut(s) 104, 122, 155, 308, 439, 463, 497, 515
HpaII CCGG 1 cut(s) 90
HphI GGTGA 3 cut(s) 53, 356, 389
Hpy188III TCNNGA 3 cut(s) 291, 505, 559
HpyCH4III ACNGT 3 cut(s) 359, 386, 545
HpyCH4V TGCA 2 cut(s) 335, 347
HpyF10VI GCNNNNNNNGC 7 cut(s) 332, 341, 344, 347, 350, 359, 525
Hsp92II CATG 8 cut(s) 104, 122, 155, 308, 439, 463, 497, 515
KpnI GGTACC 3 cut(s) 160, 214, 265
Kzo9I GATC 1 cut(s) 16
Lsp1109I GCAGC 8 cut(s) 196, 247, 312, 325, 328, 331, 347, 359
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 452, 476
MalI GATC 1 cut(s) 18
MbiI CCGCTC 1 cut(s) 275
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 56, 65, 68
MfeI CAATTG 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 3 cut(s) 318, 368, 500
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 441, 465
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 2 cut(s) 441, 465
MwoI GCNNNNNNNGC 7 cut(s) 332, 341, 344, 347, 350, 359, 525
NcoI CCATGG 1 cut(s) 304
NdeII GATC 1 cut(s) 16
NlaIII CATG 8 cut(s) 104, 122, 155, 308, 439, 463, 497, 515
NlaIV GGNNCC 3 cut(s) 158, 212, 263
NmuCI GTSAC 2 cut(s) 452, 476
NspI RCATGY 2 cut(s) 439, 463
PaeI GCATGC 2 cut(s) 439, 463
PflMI CCANNNNNTGG 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 439, 463
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 439, 463
PspN4I GGNNCC 3 cut(s) 158, 212, 263
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 6 cut(s) 158, 212, 263, 446, 470, 533
RsaNI GTAC 6 cut(s) 157, 211, 262, 445, 469, 532
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 489
Sau3AI GATC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 441, 465
SduI GDGCHC 1 cut(s) 364
SetI ASST 4 cut(s) 31, 328, 340, 489
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
SphI GCATGC 2 cut(s) 439, 463
Sse9I AATT 3 cut(s) 318, 368, 500
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 439, 463
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 3 cut(s) 359, 386, 545
TasI AATT 3 cut(s) 318, 368, 500
TauI GCSGC 4 cut(s) 235, 275, 353, 417
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 2 cut(s) 452, 476
TseI GCWGC 8 cut(s) 184, 235, 300, 335, 338, 341, 344, 347
Tsp45I GTSAC 2 cut(s) 452, 476
Van91I CCANNNNNTGG 1 cut(s) 310
XagI CCTNNNNNAGG 2 cut(s) 204, 255
XapI RAATTY 2 cut(s) 318, 500
XceI RCATGY 2 cut(s) 439, 463
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.