Rroxscaffold_4G00288210

Glycine-rich protein A3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013211
Physical Location & Seq
Forward (+)
9079201 .. 9081121
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288210.1

Sequence Viewer

Length: 537 bp
ATGGGTGGTGGTAAGGATAAGCATCAAGGTGGTGGCAGTGGTGAAGAAACTGACAAGGGCCTTTTCGGTAGTCTTCTACACGGCGTTGCCGGAGGACAGCATGGCTACCCACCTCAACAACATGGCTACCCTCCACAGGGGTATCCACCGCAACAGGGATACCCTCCACAGGGCTATCCACCGCAGCAGGGTGGATATCCCCCACAAGGGTATCCGCCGCAGCAGGGCTACCCTCCACAAGGGTACCCGCCCGCCGCTCACGGCGGTCATTCTGGAGGAGGCCATGGTATGGGGGGAATACTAGCTGGGGGTGCAGCTGCTGCTGCAGCCGCATACGGCGCTCACCAATTGGCAGGCCATCATGGTCAAGGCTCTCACCAAGTCTCCCACGGCGGCTACTATCCATCTCACGGCATGCCAGGGTTCGGGGGGCACGGCAAGGTTAAGCATGGTAAATTCGGGAAGCATGGGGGCAAGCACGGCAAGTTTGGGAAGCACGGGAAGCACGGTGGAGGCAAGTTCAAGAAGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XYPPX

Protein Analysis

178

Amino Acids

17.98

Weight (kDa)

9.77

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19200
fragaria_vesca FvH4_7g23640
malus_domestica MD01G1142300.v1.1 MD07G1208000.v1.1
prunus_persica Prupe.2G243300_v2.0.a1
pyrus_communis pycom01g16250 pycom07g19370
rosa_chinensis RchiOBHm_Chr1g0368911
rosa_laevigata RLG00000027177
rosa_multiflora Rmu_sc0004250.1_g000044 Rmu_sc0012648.1_g000003
rosa_roxburghii Rroxscaffold_4G00288210
rosa_rugosa Rorug01G0345800
rosa_samantha Rh1AG352800 Rh1BG316300 Rh1CG331000 Rh1DG347800
rosa_wichuraiana Rw1G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 1 cut(s) 523
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 2 cut(s) 305, 317
AluI AGCT 2 cut(s) 305, 317
Alw26I GTCTC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 3 cut(s) 58, 280, 355
ApeKI GCWGC 7 cut(s) 184, 220, 314, 317, 320, 323, 326
ApoI RAATTY 1 cut(s) 455
Asp718I GGTACC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 53, 335, 368
BaeGI GKGCMC 1 cut(s) 435
BaeI ACNNNNGTAYC 6 cut(s) 125, 158, 194, 227, 227, 260
BanI GGYRCC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 7 cut(s) 196, 232, 304, 307, 310, 326, 338
BccI CCATC 2 cut(s) 366, 412
BceAI ACGGC 7 cut(s) 97, 277, 352, 406, 427, 451, 496
BciT130I CCWGG 1 cut(s) 420
BciVI GTATCC 3 cut(s) 152, 153, 222
BcoDI GTCTC 1 cut(s) 388
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 342
BfuI GTATCC 3 cut(s) 152, 153, 222
Bme1390I CCNGG 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 283, 388, 419
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 283, 388, 419
BseJI GATNNNNATC 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 7 cut(s) 196, 232, 304, 307, 310, 326, 338
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 3 cut(s) 60, 282, 357
BshNI GGYRCC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 388
BsnI GGCC 3 cut(s) 60, 282, 357
Bsp1286I GDGCHC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 283
BspANI GGCC 3 cut(s) 60, 282, 357
BspLI GGNNCC 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 283, 388, 419
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 509
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 4 cut(s) 252, 355, 416, 476
BstDSI CCRYGG 2 cut(s) 283, 388
BstENI CCTNNNNNAGG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstMAI GTCTC 1 cut(s) 388
BstMWI GCNNNNNNNGC 8 cut(s) 311, 320, 323, 326, 329, 338, 480, 502
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 7 cut(s) 196, 232, 304, 307, 310, 326, 338
BstV2I GAAGAC 1 cut(s) 65
BsuI GTATCC 3 cut(s) 152, 153, 222
BsuRI GGCC 3 cut(s) 60, 282, 357
BtgI CCRYGG 2 cut(s) 283, 388
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 252, 355, 416, 476
CaiI CAGNNNCTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 244
CviAII CATG 7 cut(s) 101, 122, 284, 362, 415, 449, 467
CviQI GTAC 1 cut(s) 244
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 283
Eco32I GATATC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 7 cut(s) 104, 125, 287, 365, 418, 452, 470
FaiI YATR 9 cut(s) 102, 123, 285, 290, 334, 363, 416, 450, 468
FatI CATG 7 cut(s) 100, 121, 283, 361, 414, 448, 466
FauI CCCGC 2 cut(s) 255, 259
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 340
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 3 cut(s) 60, 282, 357
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 341
Hin1II CATG 7 cut(s) 104, 125, 287, 365, 418, 452, 470
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HpaII CCGG 1 cut(s) 90
HphI GGTGA 3 cut(s) 53, 335, 368
Hpy188III TCNNGA 3 cut(s) 273, 460, 523
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4V TGCA 2 cut(s) 314, 326
HpyF10VI GCNNNNNNNGC 8 cut(s) 311, 320, 323, 326, 329, 338, 480, 502
Hsp92II CATG 7 cut(s) 104, 125, 287, 365, 418, 452, 470
HspAI GCGC 1 cut(s) 339
KpnI GGTACC 1 cut(s) 247
Lsp1109I GCAGC 7 cut(s) 196, 232, 304, 307, 310, 326, 338
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 302
MbiI CCGCTC 1 cut(s) 257
MboII GAAGA 2 cut(s) 56, 65
MfeI CAATTG 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 2 cut(s) 347, 455
MnlI CCTC 8 cut(s) 86, 123, 141, 174, 243, 269, 272, 506
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 8 cut(s) 311, 320, 323, 326, 329, 338, 480, 502
NcoI CCATGG 1 cut(s) 283
NlaIII CATG 7 cut(s) 104, 125, 287, 365, 418, 452, 470
NlaIV GGNNCC 1 cut(s) 245
NspI RCATGY 1 cut(s) 418
PaeI GCATGC 1 cut(s) 418
PflMI CCANNNNNTGG 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 418
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 444
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 435
SetI ASST 5 cut(s) 31, 115, 307, 319, 444
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 27
SphI GCATGC 1 cut(s) 418
Sse9I AATT 2 cut(s) 347, 455
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 509
TasI AATT 2 cut(s) 347, 455
TauI GCSGC 4 cut(s) 220, 257, 332, 396
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 43
TseI GCWGC 7 cut(s) 184, 220, 314, 317, 320, 323, 326
TspRI CASTG 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 418
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.