MD07G1208000.v1.1

Glycine-rich protein A3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013211
Physical Location & Seq
Reverse (-)
28772921 .. 28774917
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1208000.v1.1.491

Sequence Viewer

Length: 516 bp
ATGGGTGGTGGGAAAGACAAGCATCACGACGACGAAGCAGACAAGGGGCTTTTTAGCCACCTTGCACACGGAGGAGGTTCGTACCCGCCTCAGCACGGGTACCCGCCGCAGCAGGGCGGCTATCCTCCGCAAGGGTACCCGCCCCAGCAGGGTGGCTATCCTCCTCAAGGGTATCCTCCCCAAGGTTACCCGCCTCAACAGGGGTACCCACCGGCTGGGTATCCTCAGCCTGGCCATCACGGCTCATCTGGACACCATGGTGCAGGGGCGTTGCTGGCTGGTGGTGCGGTCGCTGCTGCAGCTGCTGTCGGTGCTCACCATCTCACTCAAGGTGGTCACCATGGCCAAGGTTCTCACGGTATTCTCCCTGGCGGTTACGGTGCTCACAATGTTGGTCACGGCTTTGCATCACATGGCGGGAAGCATGGGAAGCATGGCAAGCAGGGGAAATTCGGGAAGCATAAGAAAGGCAAGTTCGGCAAGCACGGTGGAGGCAAGTTCAAGAAATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XYPPX

Protein Analysis

172

Amino Acids

17.38

Weight (kDa)

9.8

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19200
fragaria_vesca FvH4_7g23640
malus_domestica MD01G1142300.v1.1 MD07G1208000.v1.1
prunus_persica Prupe.2G243300_v2.0.a1
pyrus_communis pycom01g16250 pycom07g19370
rosa_chinensis RchiOBHm_Chr1g0368911
rosa_laevigata RLG00000027177
rosa_multiflora Rmu_sc0004250.1_g000044 Rmu_sc0012648.1_g000003
rosa_roxburghii Rroxscaffold_4G00288210
rosa_rugosa Rorug01G0345800
rosa_samantha Rh1AG352800 Rh1BG316300 Rh1CG331000 Rh1DG347800
rosa_wichuraiana Rw1G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 99, 135, 204
AccB1I GGYRCC 3 cut(s) 99, 135, 204
AccB7I CCANNNNNTGG 1 cut(s) 215
AcoI YGGCCR 2 cut(s) 232, 343
AcsI RAATTY 1 cut(s) 449
AfaI GTAC 4 cut(s) 83, 101, 137, 206
AfiI CCNNNNNNNGG 9 cut(s) 95, 113, 131, 149, 167, 182, 200, 215, 230
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 2 cut(s) 229, 367
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw21I GWGCWC 2 cut(s) 316, 385
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 2 cut(s) 232, 343
ApeKI GCWGC 5 cut(s) 109, 293, 296, 299, 302
ApoI RAATTY 1 cut(s) 449
Asp718I GGTACC 3 cut(s) 99, 135, 204
AsuHPI GGTGA 2 cut(s) 308, 329
BaeI ACNNNNGTAYC 2 cut(s) 188, 221
BalI TGGCCA 2 cut(s) 234, 345
BanI GGYRCC 3 cut(s) 99, 135, 204
Bbv12I GWGCWC 2 cut(s) 316, 385
BbvCI CCTCAGC 2 cut(s) 90, 225
BbvI GCAGC 5 cut(s) 121, 280, 283, 289, 311
BccI CCATC 2 cut(s) 243, 327
BceAI ACGGC 2 cut(s) 256, 415
BciT130I CCWGG 2 cut(s) 231, 369
BciVI GTATCC 2 cut(s) 183, 231
BfmI CTRYAG 1 cut(s) 297
BfuI GTATCC 2 cut(s) 183, 231
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 7 cut(s) 107, 110, 118, 294, 297, 300, 303
BlsI GCNGC 7 cut(s) 108, 111, 119, 295, 298, 301, 304
Bme1390I CCNGG 2 cut(s) 231, 369
BmiI GGNNCC 3 cut(s) 101, 137, 206
BmrFI CCNGG 2 cut(s) 231, 369
BmsI GCATC 2 cut(s) 31, 416
Bpu10I CCTNAGC 2 cut(s) 90, 225
BpuEI CTTGAG 2 cut(s) 150, 312
BsaJI CCNNGG 5 cut(s) 181, 256, 340, 346, 367
Bsc4I CCNNNNNNNGG 9 cut(s) 95, 113, 131, 149, 167, 182, 200, 215, 230
Bse118I RCCGGY 1 cut(s) 211
BseBI CCWGG 2 cut(s) 231, 369
BseDI CCNNGG 5 cut(s) 181, 256, 340, 346, 367
BseLI CCNNNNNNNGG 9 cut(s) 95, 113, 131, 149, 167, 182, 200, 215, 230
BseMII CTCAG 2 cut(s) 104, 239
BseRI GAGGAG 2 cut(s) 87, 153
BseXI GCAGC 5 cut(s) 121, 280, 283, 289, 311
BseYI CCCAGC 2 cut(s) 144, 215
BsgI GTGCAG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 234, 345
BshNI GGYRCC 3 cut(s) 99, 135, 204
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 316, 385
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 9 cut(s) 95, 113, 131, 149, 167, 182, 200, 215, 230
BsnI GGCC 2 cut(s) 234, 345
Bsp1286I GDGCHC 2 cut(s) 316, 385
Bsp19I CCATGG 2 cut(s) 256, 340
BspANI GGCC 2 cut(s) 234, 345
BspCNI CTCAG 2 cut(s) 103, 238
BspLI GGNNCC 3 cut(s) 101, 137, 206
BspMAI CTGCAG 1 cut(s) 301
BspT107I GGYRCC 3 cut(s) 99, 135, 204
BsrFI RCCGGY 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 5 cut(s) 181, 256, 340, 346, 367
BssT1I CCWWGG 4 cut(s) 181, 256, 340, 346
Bst2UI CCWGG 2 cut(s) 231, 369
Bst4CI ACNGT 3 cut(s) 359, 380, 488
BstC8I GCNNGC 3 cut(s) 276, 440, 482
BstDEI CTNAG 2 cut(s) 90, 225
BstDSI CCRYGG 2 cut(s) 256, 340
BstEII GGTNACC 2 cut(s) 185, 335
BstENI CCTNNNNNAGG 3 cut(s) 129, 165, 180
BstMCI CGRYCG 1 cut(s) 291
BstNI CCWGG 2 cut(s) 231, 369
BstPI GGTNACC 2 cut(s) 185, 335
BstSCI CCNGG 2 cut(s) 229, 367
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 5 cut(s) 121, 280, 283, 289, 311
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuI GTATCC 2 cut(s) 183, 231
BsuRI GGCC 2 cut(s) 234, 345
BtgI CCRYGG 2 cut(s) 256, 340
Cac8I GCNNGC 3 cut(s) 276, 440, 482
CaiI CAGNNNCTG 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 211
Csp6I GTAC 4 cut(s) 82, 100, 136, 205
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 5 cut(s) 257, 341, 413, 425, 434
CviQI GTAC 4 cut(s) 82, 100, 136, 205
DdeI CTNAG 2 cut(s) 90, 225
EaeI YGGCCR 2 cut(s) 232, 343
Eco130I CCWWGG 4 cut(s) 181, 256, 340, 346
Eco91I GGTNACC 2 cut(s) 185, 335
EcoNI CCTNNNNNAGG 3 cut(s) 129, 165, 180
EcoO65I GGTNACC 2 cut(s) 185, 335
EcoRII CCWGG 2 cut(s) 229, 367
EcoT14I CCWWGG 4 cut(s) 181, 256, 340, 346
ErhI CCWWGG 4 cut(s) 181, 256, 340, 346
FaeI CATG 5 cut(s) 260, 344, 416, 428, 437
FaiI YATR 6 cut(s) 258, 342, 414, 426, 435, 462
FatI CATG 5 cut(s) 256, 340, 412, 424, 433
FauI CCCGC 5 cut(s) 93, 111, 147, 198, 410
Fnu4HI GCNGC 7 cut(s) 107, 110, 118, 294, 297, 300, 303
Fsp4HI GCNGC 7 cut(s) 107, 110, 118, 294, 297, 300, 303
GluI GCNGC 7 cut(s) 107, 110, 118, 294, 297, 300, 303
GsaI CCCAGC 2 cut(s) 148, 219
HaeIII GGCC 2 cut(s) 234, 345
HapII CCGG 1 cut(s) 212
Hin1II CATG 5 cut(s) 260, 344, 416, 428, 437
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 308, 329
Hpy188III TCNNGA 4 cut(s) 26, 249, 454, 502
Hpy99I CGWCG 2 cut(s) 32, 35
HpyCH4III ACNGT 3 cut(s) 359, 380, 488
HpyCH4V TGCA 4 cut(s) 65, 263, 299, 407
HpyF3I CTNAG 2 cut(s) 90, 225
Hsp92II CATG 5 cut(s) 260, 344, 416, 428, 437
KpnI GGTACC 3 cut(s) 103, 139, 208
Lsp1109I GCAGC 5 cut(s) 121, 280, 283, 289, 311
LweI GCATC 2 cut(s) 31, 416
MaeIII GTNAC 4 cut(s) 185, 335, 374, 395
MhlI GDGCHC 2 cut(s) 316, 385
MlsI TGGCCA 2 cut(s) 234, 345
MluCI AATT 1 cut(s) 449
MluNI TGGCCA 2 cut(s) 234, 345
Mox20I TGGCCA 2 cut(s) 234, 345
MscI TGGCCA 2 cut(s) 234, 345
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 2 cut(s) 234, 345
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 231, 369
MvaI CCWGG 2 cut(s) 231, 369
NcoI CCATGG 2 cut(s) 256, 340
NlaIII CATG 5 cut(s) 260, 344, 416, 428, 437
NlaIV GGNNCC 3 cut(s) 101, 137, 206
NmuCI GTSAC 2 cut(s) 335, 395
OliI CACNNNNGTG 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 7 cut(s) 108, 111, 119, 295, 298, 301, 304
Psp6I CCWGG 2 cut(s) 229, 367
PspEI GGTNACC 2 cut(s) 185, 335
PspFI CCCAGC 2 cut(s) 144, 215
PspGI CCWGG 2 cut(s) 229, 367
PspN4I GGNNCC 3 cut(s) 101, 137, 206
PstI CTGCAG 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 4 cut(s) 83, 101, 137, 206
RsaNI GTAC 4 cut(s) 82, 100, 136, 205
RseI CAYNNNNRTG 1 cut(s) 258
SatI GCNGC 7 cut(s) 107, 110, 118, 294, 297, 300, 303
ScrFI CCNGG 2 cut(s) 231, 369
SduI GDGCHC 2 cut(s) 316, 385
SetI ASST 6 cut(s) 63, 79, 187, 304, 334, 352
SfaNI GCATC 2 cut(s) 31, 416
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 165, 327
SmoI CTYRAG 2 cut(s) 165, 327
Sse9I AATT 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 229, 367
StyI CCWWGG 4 cut(s) 181, 256, 340, 346
TaaI ACNGT 3 cut(s) 359, 380, 488
TasI AATT 1 cut(s) 449
TauI GCSGC 2 cut(s) 109, 120
TseFI GTSAC 2 cut(s) 335, 395
TseI GCWGC 5 cut(s) 109, 293, 296, 299, 302
Tsp45I GTSAC 2 cut(s) 335, 395
TspGWI ACGGA 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 215
XagI CCTNNNNNAGG 3 cut(s) 129, 165, 180
XapI RAATTY 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.