Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012786

Physical Location & Seq

Genomic Coordinates Reverse (-)

10687196 .. 10689748

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGTGCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACAGCAGAGGATGCACAAACATATGCTCAGGAAAACGGTCTTTTCTTCATGGAAACTTCAGCAAAAACCGCTACTAATGTCAAAGAGATATTCTATGAAATCGCAAGAAGGCTACCGCGAGTACAGCCAACAGAAAACCCAACAGGAATGGTTCTGCCAGACAGGGCCATGGATAGGGCAGTGAGCTCATCTTGTTGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031090 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

200

Amino Acids

21.87

Weight (kDa)

5.91

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 136	5.2e-14	ADP-ribosylation factor family
Ras	PF00071	12 - 171	2.8e-61	Ras family
Roc	PF08477	12 - 126	1.2e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT5G45130 AT5G45130
fragaria_vesca	FvH4_3g11910
malus_domestica	MD05G1256700.v1.1 MD10G1237200.v1.1
prunus_persica	Prupe.4G107100_v2.0.a1 Prupe.4G107100_v2.0.a1
pyrus_communis	pycom05g23600 pycom10g19850
rosa_chinensis	RchiOBHm_Chr5g0019441
rosa_laevigata	RLG00000032443
rosa_multiflora	Rmu_sc0002759.1_g000043
rosa_roxburghii	Rroxscaffold_1G00058620 Rroxscaffold_1G00074300
rosa_rugosa	Rorug05G0051000
rosa_samantha	Rh5CG151800
rosa_wichuraiana	Rw5G012560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	1 cut(s)	517
AciI	CCGC	3 cut(s)	200, 468, 515
AclI	AACGTT	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	3 cut(s)	215, 236, 522
AfiI	CCNNNNNNNGG	3 cut(s)	223, 346, 573
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	11, 158, 585
AluI	AGCT	3 cut(s)	11, 158, 585
Alw21I	GWGCWC	1 cut(s)	587
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	354, 564
ApeKI	GCWGC	6 cut(s)	5, 8, 134, 248, 251, 254
ApoI	RAATTY	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	355, 564
AsuHPI	GGTGA	1 cut(s)	409
BaeI	ACNNNNGTAYC	2 cut(s)	205, 238
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	5 cut(s)	20, 121, 235, 238, 241
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	187
BfmI	CTRYAG	3 cut(s)	6, 238, 323
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	6 cut(s)	6, 9, 135, 249, 252, 255
BlsI	GCNGC	6 cut(s)	7, 10, 136, 250, 253, 256
Bme1390I	CCNGG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	355, 564
BmiI	GGNNCC	2 cut(s)	215, 228
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	157, 376, 400
Bpu10I	CCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 346, 573
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	223, 346, 573
BseMII	CTCAG	1 cut(s)	440
BseXI	GCAGC	5 cut(s)	20, 121, 235, 238, 241
Bsh1236I	CGCG	1 cut(s)	517
BshFI	GGCC	2 cut(s)	356, 566
BshNI	GGYRCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	587
BslI	CCNNNNNNNGG	3 cut(s)	223, 346, 573
BsnI	GGCC	2 cut(s)	356, 566
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	3 cut(s)	200, 468, 515
BspANI	GGCC	2 cut(s)	356, 566
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	215, 228
BspMAI	CTGCAG	2 cut(s)	10, 327
BspT107I	GGYRCC	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	4 cut(s)	87, 175, 213, 437
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	426, 600
BstDSI	CCRYGG	1 cut(s)	567
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	517
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 523
BstNI	CCWGG	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	3 cut(s)	6, 238, 323
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	5 cut(s)	20, 121, 235, 238, 241
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	356, 566
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	171, 585
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	355, 564
Csp6I	GTAC	3 cut(s)	214, 235, 521
CviAII	CATG	3 cut(s)	352, 448, 568
CviQI	GTAC	3 cut(s)	214, 235, 521
DdeI	CTNAG	2 cut(s)	426, 600
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	441
Eco91I	GGTNACC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	585
EcoO65I	GGTNACC	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	3 cut(s)	355, 451, 571
FaiI	YATR	8 cut(s)	219, 347, 353, 421, 423, 449, 495, 569
FatI	CATG	3 cut(s)	351, 447, 567
FauI	CCCGC	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	6 cut(s)	6, 9, 135, 249, 252, 255
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	6 cut(s)	6, 9, 135, 249, 252, 255
GluI	GCNGC	6 cut(s)	6, 9, 135, 249, 252, 255
HaeIII	GGCC	2 cut(s)	356, 566
Hin1II	CATG	3 cut(s)	355, 451, 571
HinfI	GANTC	2 cut(s)	119, 280
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	3 cut(s)	206, 317, 428
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	388, 501
HpyCH4III	ACNGT	4 cut(s)	87, 175, 213, 437
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	5 cut(s)	8, 257, 325, 389, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 523
HpyF3I	CTNAG	2 cut(s)	426, 600
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	355, 451, 571
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	5 cut(s)	20, 121, 235, 238, 241
LweI	GCATC	3 cut(s)	157, 376, 400
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	4 cut(s)	81, 274, 335, 397
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	2 cut(s)	35, 110
MnlI	CCTC	3 cut(s)	236, 291, 400
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	11, 200
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 523
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	355, 451, 571
NlaIV	GGNNCC	2 cut(s)	215, 228
NmuCI	GTSAC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	119, 280
PflMI	CCANNNNNTGG	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	6 cut(s)	7, 10, 136, 250, 253, 256
Psp124BI	GAGCTC	1 cut(s)	587
Psp1406I	AACGTT	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	215, 228
PspPI	GGNCC	2 cut(s)	355, 564
PstI	CTGCAG	2 cut(s)	10, 327
PstNI	CAGNNNCTG	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	215, 236, 522
RsaNI	GTAC	3 cut(s)	214, 235, 521
SacI	GAGCTC	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	6 cut(s)	6, 9, 135, 249, 252, 255
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	2 cut(s)	355, 564
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	587
SetI	ASST	7 cut(s)	13, 155, 160, 247, 337, 399, 587
SfaNI	GCATC	3 cut(s)	157, 376, 400
SfcI	CTRYAG	3 cut(s)	6, 238, 323
Sse9I	AATT	2 cut(s)	35, 110
SsiI	CCGC	3 cut(s)	200, 468, 515
SstI	GAGCTC	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	4 cut(s)	87, 175, 213, 437
TaiI	ACGT	1 cut(s)	155
TasI	AATT	2 cut(s)	35, 110
TatI	WGTACW	2 cut(s)	234, 520
TfiI	GAWTC	2 cut(s)	119, 280
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	178, 585
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	6 cut(s)	5, 8, 134, 248, 251, 254
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	436, 510
TspRI	CASTG	2 cut(s)	178, 585
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.