Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012786

Physical Location & Seq

Genomic Coordinates Forward (+)

5596379 .. 5600572

Gene Structure 4194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCACCACTGGGAACAAGAACATCAATGCCAAATTGGTGCTTCTTGGGGATGTTGGAGCTGGGAAGTCTAGTCTGGTGTTGCGCTTTGTAAAAGGACAATTTATTGAATTCCAGGAATCAACCATAGGTGCTGCCTTCTTCTCACAAACATTGGCTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCTCCAATGTATTATAGAGGAGCTGCTGCTGCAATAATTGTGTATGATTTAACAAATCAAGCATCATTTGAGCGAGCAAAAAAATGGGTACTGGAACTCAAATCACAAGGCAATCCAAACATGGTTATGGCACTAGCTGGGAATAAAGCAGATCTGGTAGAGGCAAGGACTGTAGCAGCAGAGGATGCACAGGCATATGCTCAAGAGAATGGCCTTTTCTTCTTGGAAACTTCTGCAAAAACTGCAGACAATGTGAATGACATCTTCTATGAGATAGCAAAGAGATTACCTCGAGTGCAGCCTGTGCAGAACCCTGCAGGAATGGTTCTTATGGACAGACCTTCTGAAAGGGTAGCAAGCTCATCCTGTTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

201

Amino Acids

21.8

Weight (kDa)

5.91

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT5G45130 AT5G45130
fragaria_vesca	FvH4_3g11910
malus_domestica	MD05G1256700.v1.1 MD10G1237200.v1.1
prunus_persica	Prupe.4G107100_v2.0.a1 Prupe.4G107100_v2.0.a1
pyrus_communis	pycom05g23600 pycom10g19850
rosa_chinensis	RchiOBHm_Chr5g0019441
rosa_laevigata	RLG00000032443
rosa_multiflora	Rmu_sc0002759.1_g000043
rosa_roxburghii	Rroxscaffold_1G00058620 Rroxscaffold_1G00074300
rosa_rugosa	Rorug05G0051000
rosa_samantha	Rh5CG151800
rosa_wichuraiana	Rw5G012560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	110, 179
AfaI	GTAC	2 cut(s)	215, 315
AfiI	CCNNNNNNNGG	2 cut(s)	12, 223
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	4 cut(s)	62, 248, 362, 585
AluI	AGCT	4 cut(s)	62, 248, 362, 585
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	2 cut(s)	3, 436
ApeKI	GCWGC	6 cut(s)	134, 248, 251, 254, 401, 523
ApoI	RAATTY	2 cut(s)	110, 179
Asp718I	GGTACC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	516
BaeI	ACNNNNGTAYC	2 cut(s)	205, 238
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	213
BbvI	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	72, 359
BfmI	CTRYAG	3 cut(s)	396, 468, 540
BfuAI	ACCTGC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
BlsI	GCNGC	6 cut(s)	136, 250, 253, 256, 403, 525
Bme1390I	CCNGG	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	215, 228
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	296, 400
BmuI	ACTGGG	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpuEI	CTTGAG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 223
Bse1I	ACTGG	2 cut(s)	16, 321
BseBI	CCWGG	1 cut(s)	116
BseGI	GGATG	3 cut(s)	58, 415, 587
BseLI	CCNNNNNNNGG	2 cut(s)	12, 223
BseNI	ACTGG	2 cut(s)	16, 321
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BseYI	CCCAGC	2 cut(s)	62, 362
BsgI	GTGCAG	2 cut(s)	542, 551
BshFI	GGCC	2 cut(s)	5, 438
BshNI	GGYRCC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	12, 223
BsnI	GGCC	2 cut(s)	5, 438
BsoBI	CYCGRG	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	5, 438
BspLI	GGNNCC	2 cut(s)	215, 228
BspMAI	CTGCAG	2 cut(s)	472, 544
BspMI	ACCTGC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	16, 321
BssMI	GATC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	175, 397
BstAPI	GCANNNNNTGC	3 cut(s)	410, 467, 529
BstC8I	GCNNGC	2 cut(s)	300, 583
BstF5I	GGATG	3 cut(s)	58, 415, 587
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 529
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	3 cut(s)	396, 468, 540
BstV1I	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	5, 438
BtsCI	GGATG	3 cut(s)	58, 415, 587
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	300, 583
CfoI	GCGC	1 cut(s)	87
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	214, 314
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	9 cut(s)	5, 62, 158, 227, 248, 362, 438, 526, 585
CviKI_1	RGCY	9 cut(s)	5, 62, 158, 227, 248, 362, 438, 526, 585
CviQI	GTAC	2 cut(s)	214, 314
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	349
FatI	CATG	1 cut(s)	345
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
FokI	GGATG	3 cut(s)	65, 422, 574
Fsp4HI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
FspBI	CTAG	2 cut(s)	72, 359
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
GsaI	CCCAGC	2 cut(s)	66, 366
HaeIII	GGCC	2 cut(s)	5, 438
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	2 cut(s)	206, 428
HpyAV	CCTTC	2 cut(s)	148, 576
HpyCH4III	ACNGT	2 cut(s)	175, 397
HpyCH4V	TGCA	7 cut(s)	257, 413, 461, 470, 523, 532, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 529
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	3 cut(s)	59, 232, 245
Lsp1109I	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
LweI	GCATC	2 cut(s)	296, 400
MaeI	CTAG	2 cut(s)	72, 359
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	3 cut(s)	133, 436, 481
MflI	RGATCY	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	35, 101, 110, 179, 261
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	5 cut(s)	204, 236, 379, 400, 525
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 529
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	215, 228
PaeR7I	CTCGAG	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	6 cut(s)	136, 250, 253, 256, 403, 525
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	2 cut(s)	62, 362
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	215, 228
PspXI	VCTCGAGB	1 cut(s)	516
PstI	CTGCAG	2 cut(s)	472, 544
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	2 cut(s)	215, 315
RsaNI	GTAC	2 cut(s)	214, 314
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
Sau3AI	GATC	1 cut(s)	376
SbfI	CCTGCAGG	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	116
SdaI	CCTGCAGG	1 cut(s)	544
SetI	ASST	9 cut(s)	64, 133, 205, 215, 250, 364, 517, 568, 587
SfaNI	GCATC	2 cut(s)	296, 400
SfcI	CTRYAG	3 cut(s)	396, 468, 540
Sfr274I	CTCGAG	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	426, 516
SmoI	CTYRAG	2 cut(s)	426, 516
Sse8387I	CCTGCAGG	1 cut(s)	544
Sse9I	AATT	5 cut(s)	35, 101, 110, 179, 261
SspMI	CTAG	2 cut(s)	72, 359
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	175, 397
TaqI	TCGA	1 cut(s)	517
TasI	AATT	5 cut(s)	35, 101, 110, 179, 261
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	6 cut(s)	134, 248, 251, 254, 401, 523
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	110, 179
XhoI	CTCGAG	1 cut(s)	516
XspI	CTAG	2 cut(s)	72, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.