Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012786

Physical Location & Seq

Genomic Coordinates Forward (+)

14783538 .. 14786830

Gene Structure 3293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCACCACCGGGAACAAGAACATCAATGCCAAATTGGTGCTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGTTAAAGGACAGTTCATTGAATTTCAGGAATCCACAATTGGTGCTGCCTTCTTCTCGCAAACATTGGCTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGAGGAGCTGCTGCTGCAATAATTGTGTATGATTTAACTAACCAAGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGCAATCCAAATATGGTCATGGCACTAGCTGGGAATAAAGCAGATCTGGTAGAGTCAAGGAAAGTGGCAGCAGAGGAGGCACAAGCATATGCCCAGGAGAATGGCCTTTTCTTCCTCGAAACCTCTGCCAAAACTGCAGACAATGTCAATGACATTTTCTATGAGATAGCAAAGAGATTGCCTCGAGTGCAGCCTGTGCAGAACCCTGCAGGAATGGTTCTGATGGATAGACCTGCTGAAAGGGTAGCAAGCTCGTCTTGTTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

200

Amino Acids

21.84

Weight (kDa)

6.61

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 135	5.2e-12	ADP-ribosylation factor family
Ras	PF00071	12 - 171	5.1e-59	Ras family
Roc	PF08477	12 - 126	1.2e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT5G45130 AT5G45130
fragaria_vesca	FvH4_3g11910
malus_domestica	MD05G1256700.v1.1 MD10G1237200.v1.1
prunus_persica	Prupe.4G107100_v2.0.a1 Prupe.4G107100_v2.0.a1
pyrus_communis	pycom05g23600 pycom10g19850
rosa_chinensis	RchiOBHm_Chr5g0019441
rosa_laevigata	RLG00000032443
rosa_multiflora	Rmu_sc0002759.1_g000043
rosa_roxburghii	Rroxscaffold_1G00058620 Rroxscaffold_1G00074300
rosa_rugosa	Rorug05G0051000
rosa_samantha	Rh5CG151800
rosa_wichuraiana	Rw5G012560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	191, 574
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	2 cut(s)	213, 226
AccB7I	CCANNNNNTGG	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	110, 179
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	12, 223
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	4 cut(s)	62, 248, 362, 585
AluI	AGCT	4 cut(s)	62, 248, 362, 585
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	2 cut(s)	3, 436
ApeKI	GCWGC	6 cut(s)	134, 248, 251, 254, 401, 523
ApoI	RAATTY	2 cut(s)	110, 179
Asp718I	GGTACC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	87, 229
AsuC2I	CCSGG	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	516
BaeI	ACNNNNGTAYC	2 cut(s)	205, 238
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	213, 226
BbvI	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BccI	CCATC	1 cut(s)	550
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	4 cut(s)	72, 77, 317, 359
BfmI	CTRYAG	2 cut(s)	468, 540
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	2 cut(s)	191, 574
BfuI	GTATCC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
BlsI	GCNGC	6 cut(s)	136, 250, 253, 256, 403, 525
Bme1390I	CCNGG	2 cut(s)	13, 428
BmeT110I	CYCGRG	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	215, 228
BmrFI	CCNGG	2 cut(s)	13, 428
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 223
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	12, 223
BseRI	GAGGAG	2 cut(s)	258, 422
BseXI	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	2 cut(s)	542, 551
BshFI	GGCC	2 cut(s)	5, 438
BshNI	GGYRCC	2 cut(s)	213, 226
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	12, 223
BsnI	GGCC	2 cut(s)	5, 438
BsoBI	CYCGRG	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	5, 438
BspLI	GGNNCC	2 cut(s)	215, 228
BspMAI	CTGCAG	2 cut(s)	472, 544
BspMI	ACCTGC	2 cut(s)	191, 574
BspT107I	GGYRCC	2 cut(s)	213, 226
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	102, 175
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	300, 583
BstF5I	GGATG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	87, 229
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 410, 467, 520, 529
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	11, 426
BstSFI	CTRYAG	2 cut(s)	468, 540
BstV1I	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	5, 438
BtsCI	GGATG	1 cut(s)	58
BveI	ACCTGC	2 cut(s)	191, 574
Cac8I	GCNNGC	2 cut(s)	300, 583
CfoI	GCGC	2 cut(s)	87, 229
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	9 cut(s)	5, 62, 158, 248, 287, 362, 438, 526, 585
CviKI_1	RGCY	9 cut(s)	5, 62, 158, 248, 287, 362, 438, 526, 585
CviQI	GTAC	1 cut(s)	214
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	426
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
FaeI	CATG	1 cut(s)	355
FaiI	YATR	9 cut(s)	219, 240, 270, 347, 353, 421, 423, 495, 601
FalI	AAGNNNNNCTT	1 cut(s)	574
FatI	CATG	1 cut(s)	351
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
FspBI	CTAG	4 cut(s)	72, 77, 317, 359
GlaI	GCGC	2 cut(s)	86, 228
GluI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
GsaI	CCCAGC	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	5, 438
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	87, 229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	2 cut(s)	85, 227
HinP1I	GCGC	2 cut(s)	85, 227
HinfI	GANTC	2 cut(s)	119, 386
HpaII	CCGG	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	2 cut(s)	116, 206
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	102, 175
HpyCH4V	TGCA	5 cut(s)	257, 470, 523, 532, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 410, 467, 520, 529
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	2 cut(s)	85, 227
KasI	GGCGCC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	59, 245
Lsp1109I	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
MaeI	CTAG	4 cut(s)	72, 77, 317, 359
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	133, 436
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	35, 110, 126, 179, 261
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	8 cut(s)	204, 236, 298, 400, 403, 458, 466, 525
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	93, 275
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	13, 428
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	5 cut(s)	254, 410, 467, 520, 529
NarI	GGCGCC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	2 cut(s)	215, 228
PaeR7I	CTCGAG	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	119
PflFI	GACNNNGTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	136, 250, 253, 256, 403, 525
PleI	GAGTC	1 cut(s)	394
PluTI	GGCGCC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	215, 228
PspXI	VCTCGAGB	1 cut(s)	516
PstI	CTGCAG	2 cut(s)	472, 544
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	93, 275
SatI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
Sau3AI	GATC	1 cut(s)	376
SbfI	CCTGCAGG	1 cut(s)	544
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	13, 428
SdaI	CCTGCAGG	1 cut(s)	544
SetI	ASST	8 cut(s)	64, 205, 215, 250, 364, 458, 568, 587
SfcI	CTRYAG	2 cut(s)	468, 540
SfoI	GGCGCC	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse8387I	CCTGCAGG	1 cut(s)	544
Sse9I	AATT	5 cut(s)	35, 110, 126, 179, 261
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	4 cut(s)	72, 77, 317, 359
StyD4I	CCNGG	2 cut(s)	11, 426
TaaI	ACNGT	2 cut(s)	102, 175
TaqI	TCGA	2 cut(s)	450, 517
TasI	AATT	5 cut(s)	35, 110, 126, 179, 261
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	93, 275
Tru9I	TTAA	2 cut(s)	93, 275
TseI	GCWGC	6 cut(s)	134, 248, 251, 254, 401, 523
TspDTI	ATGAA	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	476
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	110, 179
XhoI	CTCGAG	1 cut(s)	516
XspI	CTAG	4 cut(s)	72, 77, 317, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.