Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012786

Physical Location & Seq

Genomic Coordinates Forward (+)

14102040 .. 14105754

Gene Structure 3715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTTGATATTGTGCTGCAGGTGCTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGTTAAAGGACAGTTCATTGAATTTCAGGAATCCACAATTGGTGCTGCCTTCTTCTCGCAAACATTGGCTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGAGGAGCTGCTGCTGCAATAATTGTGTATGATTTAACTAACCAAGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGCAATCCAAATATGGTCATGGCTCTAGCTGGGAATAAAGCAGATCTGGTAGAGTCAAGGAAAGTGGCAGCAGAGGAGGCACAAGCATATGCCCAGGAGAATGGCCTTTTCTTCCTCGAAACCTCTGCCAAAACTGCAGACAATGTCAATGACATTTTCTATGAGATAGCAAAGAGATTGCCTCGAGTGCAGCCTGTGCAGAACCCTGCAGGAATGGTTCTGATGGATAGACCTTCTGAAAGGGTAGCAAGCTCATCTTGTTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

194

Amino Acids

21.34

Weight (kDa)

5.28

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 165	7.4e-58	Ras family
Roc	PF08477	8 - 120	1.8e-32	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	8 - 129	2.5e-10	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT5G45130 AT5G45130
fragaria_vesca	FvH4_3g11910
malus_domestica	MD05G1256700.v1.1 MD10G1237200.v1.1
prunus_persica	Prupe.4G107100_v2.0.a1 Prupe.4G107100_v2.0.a1
pyrus_communis	pycom05g23600 pycom10g19850
rosa_chinensis	RchiOBHm_Chr5g0019441
rosa_laevigata	RLG00000032443
rosa_multiflora	Rmu_sc0002759.1_g000043
rosa_roxburghii	Rroxscaffold_1G00058620 Rroxscaffold_1G00074300
rosa_rugosa	Rorug05G0051000
rosa_samantha	Rh5CG151800
rosa_wichuraiana	Rw5G012560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	10
Acc36I	ACCTGC	2 cut(s)	10, 173
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	2 cut(s)	195, 208
AccB7I	CCANNNNNTGG	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	92, 161
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	4 cut(s)	44, 230, 344, 567
AluI	AGCT	4 cut(s)	44, 230, 344, 567
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	7 cut(s)	16, 116, 230, 233, 236, 383, 505
ApoI	RAATTY	2 cut(s)	92, 161
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	69, 211
AvaI	CYCGRG	1 cut(s)	498
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BanI	GGYRCC	2 cut(s)	195, 208
BbvI	GCAGC	7 cut(s)	3, 103, 217, 220, 223, 395, 517
BccI	CCATC	1 cut(s)	532
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	169
BfaI	CTAG	4 cut(s)	54, 59, 299, 341
BfmI	CTRYAG	3 cut(s)	17, 450, 522
BfoI	RGCGCY	1 cut(s)	212
BfuAI	ACCTGC	2 cut(s)	10, 173
BfuI	GTATCC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	7 cut(s)	17, 117, 231, 234, 237, 384, 506
BlsI	GCNGC	7 cut(s)	18, 118, 232, 235, 238, 385, 507
Bme1390I	CCNGG	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	498
BmiI	GGNNCC	2 cut(s)	197, 210
BmrFI	CCNGG	1 cut(s)	410
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	240, 404
BseXI	GCAGC	7 cut(s)	3, 103, 217, 220, 223, 395, 517
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	2 cut(s)	524, 533
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	2 cut(s)	195, 208
BsiHKCI	CYCGRG	1 cut(s)	498
BslI	CCNNNNNNNGG	1 cut(s)	205
BsnI	GGCC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	197, 210
BspMAI	CTGCAG	3 cut(s)	21, 454, 526
BspMI	ACCTGC	2 cut(s)	10, 173
BspT107I	GGYRCC	2 cut(s)	195, 208
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	84, 157
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	282, 565
BstF5I	GGATG	1 cut(s)	40
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	69, 211
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 236, 392, 449, 502, 511
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	3 cut(s)	17, 450, 522
BstV1I	GCAGC	7 cut(s)	3, 103, 217, 220, 223, 395, 517
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	40
BveI	ACCTGC	2 cut(s)	10, 173
Cac8I	GCNNGC	2 cut(s)	282, 565
CfoI	GCGC	2 cut(s)	69, 211
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	196
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	9 cut(s)	44, 140, 230, 269, 338, 344, 420, 508, 567
CviKI_1	RGCY	9 cut(s)	44, 140, 230, 269, 338, 344, 420, 508, 567
CviQI	GTAC	1 cut(s)	196
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
FaeI	CATG	1 cut(s)	337
FaiI	YATR	9 cut(s)	201, 222, 252, 329, 335, 403, 405, 477, 583
FalI	AAGNNNNNCTT	1 cut(s)	556
FatI	CATG	1 cut(s)	333
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	7 cut(s)	17, 117, 231, 234, 237, 384, 506
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	7 cut(s)	17, 117, 231, 234, 237, 384, 506
FspBI	CTAG	4 cut(s)	54, 59, 299, 341
GlaI	GCGC	2 cut(s)	68, 210
GluI	GCNGC	7 cut(s)	17, 117, 231, 234, 237, 384, 506
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	420
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	2 cut(s)	69, 211
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	2 cut(s)	67, 209
HinP1I	GCGC	2 cut(s)	67, 209
HinfI	GANTC	2 cut(s)	101, 368
Hpy188I	TCNGA	2 cut(s)	537, 553
Hpy188III	TCNNGA	2 cut(s)	98, 188
HpyAV	CCTTC	2 cut(s)	130, 558
HpyCH4III	ACNGT	2 cut(s)	84, 157
HpyCH4V	TGCA	6 cut(s)	19, 239, 452, 505, 514, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 236, 392, 449, 502, 511
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	2 cut(s)	67, 209
KasI	GGCGCC	1 cut(s)	208
KpnI	GGTACC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	2 cut(s)	41, 227
Lsp1109I	GCAGC	7 cut(s)	3, 103, 217, 220, 223, 395, 517
MaeI	CTAG	4 cut(s)	54, 59, 299, 341
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	115, 418
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	4 cut(s)	92, 108, 161, 243
Mly113I	GGCGCC	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	8 cut(s)	186, 218, 280, 382, 385, 440, 448, 507
MseI	TTAA	2 cut(s)	75, 257
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	6 cut(s)	22, 236, 392, 449, 502, 511
NarI	GGCGCC	1 cut(s)	209
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	197, 210
PaeR7I	CTCGAG	1 cut(s)	498
PaqCI	CACCTGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	18, 118, 232, 235, 238, 385, 507
PleI	GAGTC	1 cut(s)	376
PluTI	GGCGCC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	197, 210
PspXI	VCTCGAGB	1 cut(s)	498
PstI	CTGCAG	3 cut(s)	21, 454, 526
PsuI	RGATCY	1 cut(s)	358
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	75, 257
SatI	GCNGC	7 cut(s)	17, 117, 231, 234, 237, 384, 506
Sau3AI	GATC	1 cut(s)	358
SbfI	CCTGCAGG	1 cut(s)	526
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	410
SdaI	CCTGCAGG	1 cut(s)	526
SetI	ASST	9 cut(s)	24, 46, 187, 197, 232, 346, 440, 550, 569
SfcI	CTRYAG	3 cut(s)	17, 450, 522
SfoI	GGCGCC	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse8387I	CCTGCAGG	1 cut(s)	526
Sse9I	AATT	4 cut(s)	92, 108, 161, 243
SspDI	GGCGCC	1 cut(s)	208
SspMI	CTAG	4 cut(s)	54, 59, 299, 341
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	84, 157
TaqI	TCGA	2 cut(s)	432, 499
TasI	AATT	4 cut(s)	92, 108, 161, 243
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	75, 257
Tru9I	TTAA	2 cut(s)	75, 257
TseI	GCWGC	7 cut(s)	16, 116, 230, 233, 236, 383, 505
TspDTI	ATGAA	1 cut(s)	76
Tth111I	GACNNNGTC	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	205
XapI	RAATTY	2 cut(s)	92, 161
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	4 cut(s)	54, 59, 299, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.