Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Forward (+)

7038411 .. 7041951

Gene Structure 3541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCACCACCGGGAACAAGAATATTAATGCCAAATTGGTGCTTCTTGGTGATGTTGGAGCTGGCAAGTCTAGTCTAGTGTTGCGCTTTGTTAAAGGACAGTTCATTGAATTTCAGGAATCCACAATTGGTGCTGCCTTCTTCTCACAAACATTGGCCGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTATCATAGTTTGGCACCAATGTATTATAGAGGAGCTGCTGCTGCAATAATTGTGTATGATTTAACTAATCAAGCCTCCTTTGAGCGAGCGAAAAAATGGGTGCTAGAACTGAAATCACAAGGCAATCCAAATATGGTCATGGCACTAGCTGGGAATAAAGCAGATCTGGTAGAGTCAAGGAAGGTGGCAGCAGAGGAGGCACAAGCATATGCTCAGGAGAATGGCCTTTTCTTCCTTGAAACCTCTGCCAAAACTGCAGACAATGTCAATGACGTTTTCTATGAGATAGCAAAAAGATTACCCCGAGTGCAGCCTGTGCAGAACCCTGCAGGAATGGTTCTGATGGATAGACCTGCTGAAAGGGTAGCAAGTTCATCTTGTTGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

201

Amino Acids

21.81

Weight (kDa)

6.61

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 135	4.9e-12	ADP-ribosylation factor family
Ras	PF00071	12 - 171	4.2e-59	Ras family
Roc	PF08477	12 - 126	1.2e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	191, 574
AccB1I	GGYRCC	1 cut(s)	226
AcoI	YGGCCR	2 cut(s)	3, 156
AcsI	RAATTY	2 cut(s)	110, 179
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	110, 452
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	62, 248, 362
AluI	AGCT	3 cut(s)	62, 248, 362
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	3 cut(s)	3, 156, 436
ApeKI	GCWGC	6 cut(s)	134, 248, 251, 254, 401, 523
ApoI	RAATTY	2 cut(s)	110, 179
AseI	ATTAAT	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	87, 599
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	226
BbvI	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	4 cut(s)	72, 77, 317, 359
BfmI	CTRYAG	2 cut(s)	468, 540
BfuAI	ACCTGC	2 cut(s)	191, 574
BfuI	GTATCC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
BlsI	GCNGC	6 cut(s)	136, 250, 253, 256, 403, 525
Bme1390I	CCNGG	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	440
BseRI	GAGGAG	2 cut(s)	258, 422
BseXI	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	2 cut(s)	542, 551
BshFI	GGCC	3 cut(s)	5, 158, 438
BshNI	GGYRCC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	3 cut(s)	5, 158, 438
BsoBI	CYCGRG	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	376
BspANI	GGCC	3 cut(s)	5, 158, 438
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	2 cut(s)	472, 544
BspMI	ACCTGC	2 cut(s)	191, 574
BspT107I	GGYRCC	1 cut(s)	226
BssMI	GATC	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	102, 175
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	64, 300
BstDEI	CTNAG	1 cut(s)	426
BstHHI	GCGC	2 cut(s)	87, 599
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 529
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	2 cut(s)	468, 540
BstV1I	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	5, 158, 438
BveI	ACCTGC	2 cut(s)	191, 574
Cac8I	GCNNGC	2 cut(s)	64, 300
CfoI	GCGC	2 cut(s)	87, 599
CseI	GACGC	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	8 cut(s)	5, 62, 158, 248, 287, 362, 438, 526
CviKI_1	RGCY	8 cut(s)	5, 62, 158, 248, 287, 362, 438, 526
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	2 cut(s)	3, 156
Eco88I	CYCGRG	1 cut(s)	516
FaeI	CATG	1 cut(s)	355
FaiI	YATR	8 cut(s)	219, 240, 270, 347, 353, 421, 423, 495
FalI	AAGNNNNNCTT	1 cut(s)	574
FatI	CATG	1 cut(s)	351
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
Fsp4HI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
FspBI	CTAG	4 cut(s)	72, 77, 317, 359
GlaI	GCGC	2 cut(s)	86, 598
GluI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	5, 158, 438
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	87, 599
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	2 cut(s)	85, 597
HinP1I	GCGC	2 cut(s)	85, 597
HinfI	GANTC	2 cut(s)	119, 386
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	3 cut(s)	116, 206, 428
HpyAV	CCTTC	2 cut(s)	148, 388
HpyCH4III	ACNGT	2 cut(s)	102, 175
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	5 cut(s)	257, 470, 523, 532, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 529
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	2 cut(s)	85, 597
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	59, 245
Lsp1109I	GCAGC	6 cut(s)	121, 235, 238, 241, 413, 535
MaeI	CTAG	4 cut(s)	72, 77, 317, 359
MaeII	ACGT	1 cut(s)	486
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	133, 436
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	35, 110, 126, 179, 261
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	6 cut(s)	204, 236, 298, 400, 403, 466
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	27, 93, 275
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	254, 410, 467, 529
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	119
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	136, 250, 253, 256, 403, 525
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	228
PstI	CTGCAG	2 cut(s)	472, 544
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	27, 93, 275
SatI	GCNGC	6 cut(s)	135, 249, 252, 255, 402, 524
Sau3AI	GATC	1 cut(s)	376
SbfI	CCTGCAGG	1 cut(s)	544
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	13
SdaI	CCTGCAGG	1 cut(s)	544
SetI	ASST	9 cut(s)	64, 205, 215, 250, 364, 399, 458, 489, 568
SfcI	CTRYAG	2 cut(s)	468, 540
Sse8387I	CCTGCAGG	1 cut(s)	544
Sse9I	AATT	5 cut(s)	35, 110, 126, 179, 261
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	4 cut(s)	72, 77, 317, 359
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	102, 175
TaiI	ACGT	1 cut(s)	489
TasI	AATT	5 cut(s)	35, 110, 126, 179, 261
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	27, 93, 275
Tru9I	TTAA	3 cut(s)	27, 93, 275
TseI	GCWGC	6 cut(s)	134, 248, 251, 254, 401, 523
TspDTI	ATGAA	2 cut(s)	94, 576
Tth111I	GACNNNGTC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	2 cut(s)	110, 179
XspI	CTAG	4 cut(s)	72, 77, 317, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.