Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

14725478 .. 14726563

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1186500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGAGAACCGGCAATAAGAATATACAAGCCAAGCTGGTACTTCTTGGGGACATGGGAACTGGGAAAACAAGTTTGGTATTGAGATTTGTGACTGGAAAATTTTTGGAGTACCAGGAATCAACAATCGGAGCAGCTTTCTTCACTCAGGTTCTGTCACTAAACGAAGCTACTATCAAATTCGATATATGGGACACCGCCGGCCAGGAACGGTACCACAGCCTGGCTCCAATGTACTACCGCGGTGCTGCTGCAGCTGTTGTGGTGTACGATATCACAAGCATGGTATGGAGACTAGTCCAGAACAGTTTCTATCGTCACGTTTGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

111

Amino Acids

12.37

Weight (kDa)

9.0

Isoelectric Point (pI)

20.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 93	2.8e-08	ADP-ribosylation factor family
Ras	PF00071	12 - 95	1.1e-31	Ras family
Roc	PF08477	12 - 94	1.3e-27	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	1 cut(s)	243
AciI	CCGC	3 cut(s)	198, 241, 243
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	101, 179
AfaI	GTAC	5 cut(s)	42, 113, 215, 236, 269
AfiI	CCNNNNNNNGG	1 cut(s)	223
AhlI	ACTAGT	1 cut(s)	295
AjnI	CCWGG	3 cut(s)	114, 204, 222
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	37, 137, 170, 257
AluI	AGCT	4 cut(s)	37, 137, 170, 257
Alw26I	GTCTC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	134, 248, 251, 254
ApoI	RAATTY	2 cut(s)	101, 179
Asp700I	GAANNNNTTC	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	146, 235, 238, 266
BciT130I	CCWGG	3 cut(s)	116, 206, 224
BcoDI	GTCTC	1 cut(s)	286
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	2 cut(s)	296, 331
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	4 cut(s)	135, 249, 252, 255
BlsI	GCNGC	4 cut(s)	136, 250, 253, 256
Bme1390I	CCNGG	3 cut(s)	116, 206, 224
BmiI	GGNNCC	2 cut(s)	215, 228
BmrFI	CCNGG	3 cut(s)	116, 206, 224
BmrI	ACTGGG	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	2 cut(s)	11, 200
Bse1I	ACTGG	2 cut(s)	67, 100
BseBI	CCWGG	3 cut(s)	116, 206, 224
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	67, 100
BseXI	GCAGC	4 cut(s)	146, 235, 238, 266
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	12, 201
BslFI	GGGAC	2 cut(s)	65, 206
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	65, 206
BsnI	GGCC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	198, 241, 243
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	215, 228
BspMAI	CTGCAG	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	11, 200
BsrI	ACTGG	2 cut(s)	67, 100
BssAI	RCCGGY	2 cut(s)	11, 200
BssECI	CCNNGG	1 cut(s)	241
Bst2UI	CCWGG	3 cut(s)	116, 206, 224
Bst4CI	ACNGT	2 cut(s)	213, 308
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	3 cut(s)	116, 206, 224
BstSCI	CCNGG	3 cut(s)	114, 204, 222
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	146, 235, 238, 266
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	11, 200
Cfr42I	CCGCGG	1 cut(s)	244
Csp6I	GTAC	5 cut(s)	41, 112, 214, 235, 268
CviAII	CATG	2 cut(s)	55, 283
CviJI	RGCY	8 cut(s)	32, 37, 137, 170, 204, 222, 227, 257
CviKI_1	RGCY	8 cut(s)	32, 37, 137, 170, 204, 222, 227, 257
CviQI	GTAC	5 cut(s)	41, 112, 214, 235, 268
DdeI	CTNAG	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	114, 204, 222
EcoRV	GATATC	1 cut(s)	274
FaeI	CATG	2 cut(s)	58, 286
FaiI	YATR	6 cut(s)	26, 56, 188, 190, 284, 289
FaqI	GGGAC	2 cut(s)	65, 206
FatI	CATG	2 cut(s)	54, 282
Fnu4HI	GCNGC	4 cut(s)	135, 249, 252, 255
Fsp4HI	GCNGC	4 cut(s)	135, 249, 252, 255
FspBI	CTAG	2 cut(s)	296, 331
GluI	GCNGC	4 cut(s)	135, 249, 252, 255
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	12, 201
Hin1II	CATG	2 cut(s)	58, 286
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	2 cut(s)	12, 201
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	213, 308
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	58, 286
KpnI	GGTACC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	131, 232
Lsp1109I	GCAGC	4 cut(s)	146, 235, 238, 266
MaeI	CTAG	2 cut(s)	296, 331
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	91, 156, 317
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	2 cut(s)	101, 179
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	243, 257
MspI	CCGG	2 cut(s)	12, 201
MspR9I	CCNGG	3 cut(s)	116, 206, 224
MvaI	CCWGG	3 cut(s)	116, 206, 224
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	254
NaeI	GCCGGC	1 cut(s)	202
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	58, 286
NlaIV	GGNNCC	2 cut(s)	215, 228
NmuCI	GTSAC	3 cut(s)	91, 156, 317
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	136, 250, 253, 256
Psp6I	CCWGG	3 cut(s)	114, 204, 222
PspGI	CCWGG	3 cut(s)	114, 204, 222
PspN4I	GGNNCC	2 cut(s)	215, 228
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	5 cut(s)	42, 113, 215, 236, 269
RsaNI	GTAC	5 cut(s)	41, 112, 214, 235, 268
RseI	CAYNNNNRTG	1 cut(s)	281
SacII	CCGCGG	1 cut(s)	244
SatI	GCNGC	4 cut(s)	135, 249, 252, 255
ScrFI	CCNGG	3 cut(s)	116, 206, 224
SetI	ASST	6 cut(s)	39, 139, 153, 172, 259, 324
SfcI	CTRYAG	1 cut(s)	252
Sfr303I	CCGCGG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	281
SpeI	ACTAGT	1 cut(s)	295
Sse9I	AATT	2 cut(s)	101, 179
SsiI	CCGC	3 cut(s)	198, 241, 243
SspMI	CTAG	2 cut(s)	296, 331
StyD4I	CCNGG	3 cut(s)	114, 204, 222
TaaI	ACNGT	2 cut(s)	213, 308
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	183
TasI	AATT	2 cut(s)	101, 179
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	119
TseFI	GTSAC	3 cut(s)	91, 156, 317
TseI	GCWGC	4 cut(s)	134, 248, 251, 254
Tsp45I	GTSAC	3 cut(s)	91, 156, 317
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	101, 179
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	2 cut(s)	296, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.