Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Forward (+)

78161542 .. 78164532

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGTTTGCAAGGTCCTTGTTGAAAAAATTCAAGTCCAAAGAGAAGGTGAAGTCTTCAAAGAGTAGGGATACAAGAGGTAATGGGAAAGAGGCGTCAAAAGGACCAACAACAACGGAAGAAGTATCTTCAAATGTAACCAAGCAGAAGGTTGCAGCTGCAAAGCAGTATATAGAGAATCATTACAAGAAGCAAATGAAAAGTTTGCAGGAGAAGAAGGAGCGCTCTTTTGCAGGAGAAGAAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

83

Amino Acids

9.4

Weight (kDa)

9.95

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	95
AfeI	AGCGCT	1 cut(s)	224
AgsI	TTSAA	4 cut(s)	25, 34, 60, 132
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Aor51HI	AGCGCT	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	155, 158
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	15, 104
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	15, 104
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	145, 167
BciVI	GTATCC	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	156, 159
BlsI	GCNGC	2 cut(s)	157, 160
Bme18I	GGWCC	2 cut(s)	15, 104
BmgT120I	GGNCC	2 cut(s)	15, 104
BpiI	GAAGAC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	95
BsaXI	ACNNNNNCTCC	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	145, 167
BssNI	GRCGYC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	145, 167
BstV2I	GAAGAC	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	15, 104
CseI	GACGC	1 cut(s)	84
CviJI	RGCY	1 cut(s)	158
CviKI_1	RGCY	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	15, 104
Eco47III	AGCGCT	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	15
FaiI	YATR	2 cut(s)	171, 173
Fnu4HI	GCNGC	2 cut(s)	156, 159
Fsp4HI	GCNGC	2 cut(s)	156, 159
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	156, 159
HaeII	RGCGCY	1 cut(s)	226
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	40, 142, 211
HpyCH4V	TGCA	5 cut(s)	11, 155, 161, 208, 233
Hsp92I	GRCGYC	1 cut(s)	95
HspAI	GCGC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	194, 219
Lsp1109I	GCAGC	2 cut(s)	145, 167
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	5 cut(s)	48, 120, 131, 226, 251
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	2 cut(s)	71, 85
MroXI	GAANNNNTTC	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	157, 160
PpuMI	RGGWCCY	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	15, 104
PspPPI	RGGWCCY	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	158
SatI	GCNGC	2 cut(s)	156, 159
Sau96I	GGNCC	2 cut(s)	15, 104
SetI	ASST	5 cut(s)	17, 51, 82, 153, 160
SgeI	CNNG	8 cut(s)	24, 31, 46, 87, 154, 199, 221, 246
SinI	GGWCC	2 cut(s)	15, 104
Sse9I	AATT	1 cut(s)	29
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	155, 158
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	15, 104
XapI	RAATTY	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.