Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Forward (+)

26047767 .. 26048196

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTAAATTTTAACCAAGACCATACTCACAAGCAAAATACAAATACAAAAGTCCATTTTAAAATGAAGGTGCTTCTTGGGGATGTTGGAGCTGGGAAATCAAGTCTGGTGTTGCGCTTTGTAAAAGAACAATTCGTTGAATTTCAGGTTTGTTTTATATCTTTCAAAGGACGCATTTTCTTTTTTATCCATACCTTTACTTTTATAGTATGTTATTACAAGAATCAATTGCCATCCTTAGTTGGTGGTATTATCTTTACAACACATTCAAGGCAACGAATAAAATCGCACTTGCTATTTGTTCTGTCAACTGGACTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031090 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

108

Amino Acids

12.43

Weight (kDa)

10.1

Isoelectric Point (pI)

16.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	7, 140
AgsI	TTSAA	3 cut(s)	140, 166, 270
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	7, 140
AspLEI	GCGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	88, 233
BseNI	ACTGG	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	88, 233
BstHHI	GCGC	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	88, 233
CfoI	GCGC	1 cut(s)	117
CseI	GACGC	1 cut(s)	180
CviJI	RGCY	1 cut(s)	92
CviKI_1	RGCY	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	61
FaiI	YATR	6 cut(s)	24, 158, 192, 206, 211, 322
FokI	GGATG	2 cut(s)	95, 220
GlaI	GCGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	96
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	4 cut(s)	78, 92, 131, 297
MfeI	CAATTG	1 cut(s)	227
MluCI	AATT	4 cut(s)	7, 131, 140, 227
MmeI	TCCRAC	1 cut(s)	67
MseI	TTAA	2 cut(s)	12, 60
MunI	CAATTG	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	12, 60
SetI	ASST	4 cut(s)	72, 94, 150, 197
SfcI	CTRYAG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	7, 131, 140, 227
TasI	AATT	4 cut(s)	7, 131, 140, 227
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	12, 60
Tru9I	TTAA	2 cut(s)	12, 60
TspDTI	ATGAA	1 cut(s)	80
XapI	RAATTY	2 cut(s)	7, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.