Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

22044977 .. 22051280

Gene Structure 6304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCACCACCGGGAACAAGAACATTAATGCCAAATTGGTCTCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGCTAAAGGACAGTTCATTGAATTTCAGGAATCGACAATTGGTGCTATCTTCTTCTCGCAAACATTGGCTGTAAATGATGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGGGGAGCTGCTGTTGCAATAATTGTGTATGATTTAACTAACCAATTACCTTTCATAATGACAATGTCAAGTCTTTACCGTATATATTGTTGGATATTGTTTAATTTACTTAAGATCATTGGCATTGGTCCAAATTTAGTGACACAGGACTATGAGCCAAAGTTTTCCTACAATCAGCAACAACAGACCCTCCTCAAGATTCAAGTGAATCAAGTAAGGTCTGAGGAGAATGTGGCAGATTTGTTCACCAAATCACTGCCTAGAGCCACATTTGAGAAACATGTGAAAAGTAAAATGGGAACTTGTTGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

9.11

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	15 - 95	2.2e-26	Ras family
Roc	PF08477	15 - 88	1.9e-21	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	2 cut(s)	195, 208
AccB7I	CCANNNNNTGG	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	92, 161, 355
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	12, 205
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	92, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	3 cut(s)	92, 161, 355
AseI	ATTAAT	1 cut(s)	27
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	69, 211
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	195, 208
BbvI	GCAGC	1 cut(s)	217
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	3 cut(s)	54, 59, 483
BfoI	RGCGCY	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	197, 210
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	46
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 205
BseLI	CCNNNNNNNGG	2 cut(s)	12, 205
BseMII	CTCAG	1 cut(s)	435
BseRI	GAGGAG	2 cut(s)	404, 461
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	195, 208
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	12, 205
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	197, 210
BspMI	ACCTGC	1 cut(s)	173
BspT107I	GGYRCC	2 cut(s)	195, 208
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	46
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	84, 157, 302
BstACI	GRCGYC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	444
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	69, 211
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	1 cut(s)	173
CfoI	GCGC	2 cut(s)	69, 211
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	503
CviJI	RGCY	5 cut(s)	5, 140, 230, 379, 488
CviKI_1	RGCY	5 cut(s)	5, 140, 230, 379, 488
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	444
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
FaeI	CATG	1 cut(s)	506
FaiI	YATR	8 cut(s)	201, 222, 252, 278, 305, 307, 375, 504
FatI	CATG	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	3 cut(s)	54, 59, 483
GlaI	GCGC	2 cut(s)	68, 210
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	2 cut(s)	69, 211
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	2 cut(s)	67, 209
HinP1I	GCGC	2 cut(s)	67, 209
HinfI	GANTC	3 cut(s)	101, 421, 430
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	4 cut(s)	45, 98, 188, 418
Hpy8I	GTNNAC	1 cut(s)	468
HpyCH4III	ACNGT	3 cut(s)	84, 157, 302
HpyCH4V	TGCA	2 cut(s)	152, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	2 cut(s)	67, 209
KasI	GGCGCC	1 cut(s)	208
KpnI	GGTACC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	5 cut(s)	25, 30, 83, 168, 353
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	3 cut(s)	54, 59, 483
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	2 cut(s)	112, 115
MfeI	CAATTG	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	35, 92, 108, 161, 243, 266, 325, 355
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	186, 422, 425, 439
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	27, 257, 324, 333
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	236
NarI	GGCGCC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	2 cut(s)	197, 210
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	506
PciI	ACATGT	1 cut(s)	502
PfeI	GAWTC	3 cut(s)	101, 421, 430
PflFI	GACNNNGTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	232
PluTI	GGCGCC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	502
PshBI	ATTAAT	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	197, 210
PspPI	GGNCC	1 cut(s)	350
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	27, 257, 324, 333
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	5 cut(s)	187, 197, 232, 274, 443
SfaNI	GCATC	1 cut(s)	139
SfoI	GGCGCC	1 cut(s)	210
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	332, 416
SmoI	CTYRAG	2 cut(s)	332, 416
Sse9I	AATT	8 cut(s)	35, 92, 108, 161, 243, 266, 325, 355
SspDI	GGCGCC	1 cut(s)	208
SspMI	CTAG	3 cut(s)	54, 59, 483
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	84, 157, 302
TaqI	TCGA	1 cut(s)	104
TasI	AATT	8 cut(s)	35, 92, 108, 161, 243, 266, 325, 355
TfiI	GAWTC	3 cut(s)	101, 421, 430
Tru1I	TTAA	4 cut(s)	27, 257, 324, 333
Tru9I	TTAA	4 cut(s)	27, 257, 324, 333
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	76, 265
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	3 cut(s)	92, 161, 355
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	3 cut(s)	54, 59, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.