Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

80571030 .. 80572710

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036433

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCACCACCGGGAACAAGAACATCAATGCCAAATTGTTGCATTTTGTGATCGTTGGAGTGATGTTTGATATTCTGCTACAAGTGCTTCTTGGGGATGTTGGTGCTGGAAAGTCTAGTCTAGTGTTGCACTTTGAATCGACAATTGGTGCTGCCTTCTTCTCACAAACATTGGCTATAAATGACCCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGTGCCAATATATTATAAAGGAGCTGCTGCTGCAATAATTGTGTATGATTTAACTAACCAAGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGTACTGCTCGCACTTTCTTGCTATCTAAACTCACTCAGTCCTTGGCTGCTTTAAACAATCTTAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

141

Amino Acids

15.37

Weight (kDa)

9.26

Isoelectric Point (pI)

22.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	29 - 119	4.4e-27	Ras family
Roc	PF08477	29 - 123	3.3e-21	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	209
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	231, 244
AccB7I	CCANNNNNTGG	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	2 cut(s)	233, 355
AfiI	CCNNNNNNNGG	2 cut(s)	12, 241
AgsI	TTSAA	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	152, 266, 269, 272, 398
ApoI	RAATTY	1 cut(s)	197
Asp718I	GGTACC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	13
BaeI	ACNNNNGTAYC	2 cut(s)	223, 256
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	231, 244
BbvI	GCAGC	5 cut(s)	139, 253, 256, 259, 385
BciVI	GTATCC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	3 cut(s)	117, 122, 335
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	5 cut(s)	153, 267, 270, 273, 399
BlsI	GCNGC	5 cut(s)	154, 268, 271, 274, 400
Bme1390I	CCNGG	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	233, 246
BmrFI	CCNGG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 241
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	12, 241
BseMII	CTCAG	1 cut(s)	401
BseXI	GCAGC	5 cut(s)	139, 253, 256, 259, 385
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	231, 244
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	12, 241
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	233, 246
BspMI	ACCTGC	1 cut(s)	209
BspT107I	GGYRCC	2 cut(s)	231, 244
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	318, 361
BstDEI	CTNAG	2 cut(s)	387, 413
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 272
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	5 cut(s)	139, 253, 256, 259, 385
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	318, 361
Csp6I	GTAC	2 cut(s)	232, 354
CviJI	RGCY	6 cut(s)	5, 176, 266, 305, 398, 418
CviKI_1	RGCY	6 cut(s)	5, 176, 266, 305, 398, 418
CviQI	GTAC	2 cut(s)	232, 354
DdeI	CTNAG	2 cut(s)	387, 413
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaiI	YATR	6 cut(s)	179, 237, 253, 258, 288, 421
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
Fnu4HI	GCNGC	5 cut(s)	153, 267, 270, 273, 399
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	5 cut(s)	153, 267, 270, 273, 399
FspBI	CTAG	3 cut(s)	117, 122, 335
GluI	GCNGC	5 cut(s)	153, 267, 270, 273, 399
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	12
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	43, 130, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 272
HpyF3I	CTNAG	2 cut(s)	387, 413
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	3 cut(s)	25, 93, 204
Lsp1109I	GCAGC	5 cut(s)	139, 253, 256, 259, 385
MaeI	CTAG	3 cut(s)	117, 122, 335
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	151
MfeI	CAATTG	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	35, 144, 197, 279
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	222, 316
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	293, 404
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	85, 272
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	233, 246
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	154, 268, 271, 274, 400
PsiI	TTATAA	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	233, 246
RsaI	GTAC	2 cut(s)	233, 355
RsaNI	GTAC	2 cut(s)	232, 354
SaqAI	TTAA	2 cut(s)	293, 404
SatI	GCNGC	5 cut(s)	153, 267, 270, 273, 399
Sau3AI	GATC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	4 cut(s)	223, 233, 268, 355
Sse9I	AATT	4 cut(s)	35, 144, 197, 279
SspMI	CTAG	3 cut(s)	117, 122, 335
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	140
TasI	AATT	4 cut(s)	35, 144, 197, 279
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	293, 404
Tru9I	TTAA	2 cut(s)	293, 404
TseI	GCWGC	5 cut(s)	152, 266, 269, 272, 398
Van91I	CCANNNNNTGG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	3 cut(s)	117, 122, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.