Rroxscaffold_5G00345420

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007069
Physical Location & Seq
Reverse (-)
15868763 .. 15871008
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345420.1

Sequence Viewer

Length: 441 bp
ATGCCGAAGCTTCAAGCGCCGCCGCTTCTCGCGCCGCCGGAAAGTAGTAGTAGTAGGGTTCGGATGGGAGAGAGAGATCTTCTAACAGGGATCCCGGTGCTCGGGCCGCCGAAAGTCTCATCGAAAGACCATGAAGGCATGAGACATGGTCTTAGAGAAATAGCTCATTGGTTAAGTTATCCTGGAGATGGTACAATTTTGATGTTTGATATTGTGCTGTATGTGCTTCTTGGGGATGTTGGAGCTAGAAAGTCTAGTCTAGTGTTGCGCTTTGCTAAAGGACAGTTCATTGAATTTCAGGAATCGACAATTGGTGCTATCTTCTTCTCGCAAACATTGGCTGTAAATGATGCAACTGTAAAATTTGAGATTTGGGATACAGCAGTCAAGAGAGTTGAGGGTGAGGCATTTGATCTTTTTGAGAAAGCGAGTAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

146

Amino Acids

16.1

Weight (kDa)

5.91

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 74 - 128 6.1e-13 Ras family
Roc PF08477 75 - 132 9.8e-10 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 20, 23, 35, 107
AclWI GGATC 2 cut(s) 85, 98
AcsI RAATTY 2 cut(s) 293, 362
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 2 cut(s) 101, 188
AgsI TTSAA 2 cut(s) 14, 293
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 3 cut(s) 10, 164, 245
AluI AGCT 3 cut(s) 10, 164, 245
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 121, 136
AlwI GGATC 2 cut(s) 85, 98
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 293, 362
AspLEI GCGC 3 cut(s) 19, 34, 270
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 101
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BamHI GGATCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 2 cut(s) 58, 182
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 1 cut(s) 370
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 121, 136
BfaI CTAG 3 cut(s) 246, 255, 260
BfoI RGCGCY 1 cut(s) 20
BfuI GTATCC 1 cut(s) 370
BglII AGATCT 1 cut(s) 76
BisI GCNGC 4 cut(s) 20, 23, 35, 107
BlsI GCNGC 4 cut(s) 21, 24, 36, 108
Bme1390I CCNGG 2 cut(s) 95, 183
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 95, 183
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 188
BseBI CCWGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 69, 241
BseLI CCNNNNNNNGG 2 cut(s) 101, 188
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 2 cut(s) 38, 95
BslI CCNNNNNNNGG 2 cut(s) 101, 188
BsmAI GTCTC 2 cut(s) 121, 136
BsnI GGCC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 76, 90, 412
BspACI CCGC 4 cut(s) 20, 23, 35, 107
BspANI GGCC 1 cut(s) 106
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 2 cut(s) 85, 98
BssMI GATC 3 cut(s) 76, 90, 412
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 285, 358
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 69, 241
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 3 cut(s) 19, 34, 270
BstKTI GATC 3 cut(s) 79, 93, 415
BstMAI GTCTC 2 cut(s) 121, 136
BstMBI GATC 3 cut(s) 76, 90, 412
BstMWI GCNNNNNNNGC 4 cut(s) 16, 31, 106, 223
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 93, 181
BstUI CGCG 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 76, 90
BstYI RGATCY 2 cut(s) 76, 90
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 2 cut(s) 69, 241
CfoI GCGC 3 cut(s) 19, 34, 270
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 192
CviAII CATG 3 cut(s) 131, 139, 146
CviJI RGCY 5 cut(s) 10, 106, 164, 245, 341
CviKI_1 RGCY 5 cut(s) 10, 106, 164, 245, 341
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 78, 92, 414
DpnII GATC 3 cut(s) 76, 90, 412
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 181
FaeI CATG 3 cut(s) 134, 142, 149
FaiI YATR 4 cut(s) 132, 140, 147, 222
FatI CATG 3 cut(s) 130, 138, 145
Fnu4HI GCNGC 4 cut(s) 20, 23, 35, 107
FokI GGATG 2 cut(s) 76, 248
Fsp4HI GCNGC 4 cut(s) 20, 23, 35, 107
FspBI CTAG 3 cut(s) 246, 255, 260
GlaI GCGC 3 cut(s) 18, 33, 269
GluI GCNGC 4 cut(s) 20, 23, 35, 107
GsuI CTGGAG 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 1 cut(s) 106
HapII CCGG 2 cut(s) 38, 95
HhaI GCGC 3 cut(s) 19, 34, 270
Hin1II CATG 3 cut(s) 134, 142, 149
Hin6I GCGC 3 cut(s) 17, 32, 268
HinP1I GCGC 3 cut(s) 17, 32, 268
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 302
HpaII CCGG 2 cut(s) 38, 95
HphI GGTGA 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 299, 388
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 285, 358
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 31, 106, 223
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 3 cut(s) 134, 142, 149
HspAI GCGC 3 cut(s) 17, 32, 268
Kzo9I GATC 3 cut(s) 76, 90, 412
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 51, 72, 108, 168, 195, 284
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 246, 255, 260
MalI GATC 3 cut(s) 78, 92, 414
MboI GATC 3 cut(s) 76, 90, 412
MboII GAAGA 3 cut(s) 71, 313, 316
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 76, 90
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 195, 293, 309, 362
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 2 cut(s) 391, 397
MseI TTAA 1 cut(s) 173
MspI CCGG 2 cut(s) 38, 95
MspR9I CCNGG 2 cut(s) 95, 183
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 4 cut(s) 16, 31, 106, 223
NciI CCSGG 1 cut(s) 95
NdeII GATC 3 cut(s) 76, 90, 412
NlaIII CATG 3 cut(s) 134, 142, 149
NlaIV GGNNCC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 302
PflFI GACNNNGTC 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 4 cut(s) 21, 24, 36, 108
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 2 cut(s) 76, 90
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 4 cut(s) 20, 23, 35, 107
Sau3AI GATC 3 cut(s) 76, 90, 412
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 95, 183
SduI GDGCHC 1 cut(s) 102
SetI ASST 3 cut(s) 12, 166, 247
SfaNI GCATC 1 cut(s) 340
Sse9I AATT 4 cut(s) 195, 293, 309, 362
SsiI CCGC 4 cut(s) 20, 23, 35, 107
SspMI CTAG 3 cut(s) 246, 255, 260
StyD4I CCNGG 2 cut(s) 93, 181
TaaI ACNGT 2 cut(s) 285, 358
TaqI TCGA 2 cut(s) 122, 305
TasI AATT 4 cut(s) 195, 293, 309, 362
TauI GCSGC 4 cut(s) 22, 25, 37, 109
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 147, 277
Tth111I GACNNNGTC 1 cut(s) 147
XapI RAATTY 2 cut(s) 293, 362
XspI CTAG 3 cut(s) 246, 255, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.