Rh5AG279100

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007069
Physical Location & Seq
Reverse (-)
37734364 .. 37736716
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG279100.1

Sequence Viewer

Length: 381 bp
ATGTTTGATATTGTGCTGTATGTGCTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGCTAAAGGACAGTTCATTGAATTTCAGGAATCGACAATTGGTGCTATCTTCTTCTCGCAAACATTGGCTGTAAATGATGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGGGGAGCTGCTGTTGCAATAATTGTGTATGATTTAACTAACCAAATTATCGTGGTGTACAATTCTCTTGGATGGAAGAGGGATGACACAGTCCGAATTCCTGTCATCAATGAAGATGTCATTGTTCATGATTCGGAGGGAAAAGAAATTGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

126

Amino Acids

14.12

Weight (kDa)

4.64

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 7 - 89 1.4e-29 Ras family
Roc PF08477 8 - 88 2.7e-25 Ras of Complex, Roc, domain of DAPkinase
Arf PF00025 8 - 87 3.8e-06 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 2 cut(s) 195, 208
AccB7I CCANNNNNTGG 1 cut(s) 205
AcsI RAATTY 3 cut(s) 92, 161, 318
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 2 cut(s) 197, 281
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 2 cut(s) 44, 230
AluI AGCT 2 cut(s) 44, 230
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 3 cut(s) 92, 161, 318
Asp718I GGTACC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 69, 211
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BanI GGYRCC 2 cut(s) 195, 208
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 288
BciVI GTATCC 1 cut(s) 169
BfaI CTAG 2 cut(s) 54, 59
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 197, 210
BmsI GCATC 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseGI GGATG 3 cut(s) 40, 299, 310
BseLI CCNNNNNNNGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 217
BshNI GGYRCC 2 cut(s) 195, 208
BslI CCNNNNNNNGG 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 279
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 197, 210
BspMI ACCTGC 1 cut(s) 173
BspT107I GGYRCC 2 cut(s) 195, 208
BsrGI TGTACA 1 cut(s) 279
BssNI GRCGYC 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 84, 157, 313
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 279
BstF5I GGATG 3 cut(s) 40, 299, 310
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 2 cut(s) 69, 211
BstMWI GCNNNNNNNGC 2 cut(s) 22, 236
BstV1I GCAGC 1 cut(s) 217
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 3 cut(s) 40, 299, 310
BveI ACCTGC 1 cut(s) 173
CciI TCATGA 1 cut(s) 349
CfoI GCGC 2 cut(s) 69, 211
Csp6I GTAC 2 cut(s) 196, 280
CviAII CATG 1 cut(s) 350
CviJI RGCY 3 cut(s) 44, 140, 230
CviKI_1 RGCY 3 cut(s) 44, 140, 230
CviQI GTAC 2 cut(s) 196, 280
DinI GGCGCC 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 318
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
FaeI CATG 1 cut(s) 353
FaiI YATR 6 cut(s) 21, 201, 222, 252, 351, 379
FatI CATG 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 3 cut(s) 47, 306, 317
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 54, 59
GlaI GCGC 2 cut(s) 68, 210
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 212
HhaI GCGC 2 cut(s) 69, 211
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 1 cut(s) 353
Hin6I GCGC 2 cut(s) 67, 209
HinP1I GCGC 2 cut(s) 67, 209
HinfI GANTC 3 cut(s) 101, 353, 374
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 317, 358
Hpy188III TCNNGA 3 cut(s) 98, 188, 350
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4III ACNGT 3 cut(s) 84, 157, 313
HpyCH4V TGCA 2 cut(s) 152, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 236
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 353
HspAI GCGC 2 cut(s) 67, 209
KasI GGCGCC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 41, 227
LpnPI CCDG 4 cut(s) 30, 83, 168, 336
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 54, 59
MboII GAAGA 4 cut(s) 112, 115, 310, 347
MfeI CAATTG 1 cut(s) 108
MluCI AATT 8 cut(s) 92, 108, 161, 243, 267, 283, 318, 369
Mly113I GGCGCC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 186, 294, 352
MseI TTAA 1 cut(s) 257
MunI CAATTG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 22, 236
NarI GGCGCC 1 cut(s) 209
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 2 cut(s) 197, 210
PagI TCATGA 1 cut(s) 349
PfeI GAWTC 2 cut(s) 101, 353
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 1 cut(s) 232
PluTI GGCGCC 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 197, 210
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 2 cut(s) 197, 281
RsaNI GTAC 2 cut(s) 196, 280
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 231
SetI ASST 4 cut(s) 46, 187, 197, 232
SfaNI GCATC 1 cut(s) 139
SfoI GGCGCC 1 cut(s) 210
Sse9I AATT 8 cut(s) 92, 108, 161, 243, 267, 283, 318, 369
SspDI GGCGCC 1 cut(s) 208
SspMI CTAG 2 cut(s) 54, 59
TaaI ACNGT 3 cut(s) 84, 157, 313
TaqI TCGA 1 cut(s) 104
TasI AATT 8 cut(s) 92, 108, 161, 243, 267, 283, 318, 369
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 2 cut(s) 101, 353
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 76, 338, 348
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 205
XapI RAATTY 3 cut(s) 92, 161, 318
XspI CTAG 2 cut(s) 54, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.