Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

19758327 .. 19763895

Gene Structure 5569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCACCACCGGGAACAAGAACATCAATGCCAAATTGTTGCATTTTGTGATCGTTAGAGTGATGTTTGATATTGTGCTGTATGTGCTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGCTAAAGGACAGTTCATTGAATTTCAGGAATCGACAATTGGTGCTATCTTCTTCTCGCAAACATTGGCTGTAAATGATGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGGGGAGCTGCTGTTGCAATAATTGTGTATGATTTAACTAACCAAGTGACTGGCCTTATGTTTTTGTCTTGGCTTTCGTTTAATAGAGTAAAAAGGATTTTAGTATTCCTCTACATTTGTGTAATGTTTGTAAGATTTACAGTTGGTCCAAATTTAGTGACACAGGACTATGTGGTTGGACTTGATGACAGACTATATAAAAGACTTACCATTTGTGGTTCGTTTTATATTCAGACCACAAATATTTCAGAGACGAGTTCATCACCTTGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

8.68

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	28 - 112	1.3e-29	Ras family
Roc	PF08477	29 - 113	3.3e-25	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	29 - 108	8.9e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	258, 271
AccB7I	CCANNNNNTGG	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	155, 224, 436
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	12, 268
AgsI	TTSAA	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	2 cut(s)	107, 293
AluI	AGCT	2 cut(s)	107, 293
Alw26I	GTCTC	1 cut(s)	530
AoxI	GGCC	2 cut(s)	3, 337
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	3 cut(s)	155, 224, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	132, 274
AspS9I	GGNCC	1 cut(s)	431
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	431
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	258, 271
BbvI	GCAGC	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	2 cut(s)	117, 122
BfoI	RGCGCY	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	260, 273
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 268
Bse1I	ACTGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	12, 268
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	5, 339
BshNI	GGYRCC	2 cut(s)	258, 271
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	12, 268
BsmAI	GTCTC	1 cut(s)	530
BsmBI	CGTCTC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	5, 339
Bsp143I	GATC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	5, 339
BspLI	GGNNCC	2 cut(s)	260, 273
BspMI	ACCTGC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	258, 271
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	147, 220, 427
BstACI	GRCGYC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	132, 274
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 299
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	5, 339
BtsCI	GGATG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	236
CfoI	GCGC	2 cut(s)	132, 274
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	259
CviJI	RGCY	6 cut(s)	5, 107, 203, 293, 339, 358
CviKI_1	RGCY	6 cut(s)	5, 107, 203, 293, 339, 358
CviQI	GTAC	1 cut(s)	259
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	431
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	530
FaiI	YATR	9 cut(s)	84, 264, 285, 315, 344, 456, 481, 483, 513
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	117, 122
GlaI	GCGC	2 cut(s)	131, 273
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	5, 339
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	2 cut(s)	132, 274
Hin1I	GRCGYC	1 cut(s)	272
Hin6I	GCGC	2 cut(s)	130, 272
HinP1I	GCGC	2 cut(s)	130, 272
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	540
Hpy188I	TCNGA	2 cut(s)	519, 535
Hpy188III	TCNNGA	2 cut(s)	161, 251
HpyCH4III	ACNGT	3 cut(s)	147, 220, 427
HpyCH4V	TGCA	3 cut(s)	43, 215, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 299
Hsp92I	GRCGYC	1 cut(s)	272
HspAI	GCGC	2 cut(s)	130, 272
KasI	GGCGCC	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	104, 290
LpnPI	CCDG	6 cut(s)	25, 93, 146, 231, 321, 434
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	117, 122
MaeIII	GTNAC	2 cut(s)	331, 442
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	175, 178
MfeI	CAATTG	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	35, 155, 171, 224, 306, 436
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	82, 442
MnlI	CCTC	2 cut(s)	249, 404
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	320, 366
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	85, 299
NarI	GGCGCC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	260, 273
NmuCI	GTSAC	2 cut(s)	331, 442
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	295
PluTI	GGCGCC	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	260, 273
PspPI	GGNCC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	320, 366
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	5 cut(s)	109, 250, 260, 295, 553
SfaNI	GCATC	1 cut(s)	202
SfoI	GGCGCC	1 cut(s)	273
SinI	GGWCC	1 cut(s)	431
Sse9I	AATT	6 cut(s)	35, 155, 171, 224, 306, 436
SspDI	GGCGCC	1 cut(s)	271
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	2 cut(s)	117, 122
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	147, 220, 427
TaqI	TCGA	1 cut(s)	167
TasI	AATT	6 cut(s)	35, 155, 171, 224, 306, 436
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	320, 366
Tru9I	TTAA	2 cut(s)	320, 366
TseFI	GTSAC	2 cut(s)	331, 442
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	2 cut(s)	331, 442
TspDTI	ATGAA	2 cut(s)	139, 534
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	3 cut(s)	155, 224, 436
XspI	CTAG	2 cut(s)	117, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.