Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

4880127 .. 4886317

Gene Structure 6191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G002470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCACCACCGGGAACAAGAACATCAATGCCAAATTGTTGCATTTTGTGATCGTTAGAGTGATGTTTGATATTGTGCTGTATGTGCTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGCTAAAGGACAGTTCATTGAATTTCAGGAATCGACAATTGGTGCTATCTTCTTCTCGCAAACATTGGCTGTAAATGATGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGTGCCAATGTATTATAGGGGAGCTGCTGTTGCAATAATTGTGTATGATTTAACTAACCAAGTGAAATTACCTTTCATAATGACAATGTCAAGTCTTTACCGTATATATTGTTGGATATTGTTTAAAATTACAGTTGGTCCAAATTTAACGACAGAAGTGTTCTGTCGTCTGATACCCCCAAGACACGACACCGTACTAGACGACATATTTTATTTCCTTCAGACGACAGAACAGTTCTGTCAGCCGGTTCAAGGGTCTCTAATTCACATCAAGAGGCCTAAAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

186

Amino Acids

21.27

Weight (kDa)

8.76

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	28 - 112	3.5e-29	Ras family
Roc	PF08477	29 - 110	1e-24	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	29 - 111	3.5e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	258, 271
AccB7I	CCANNNNNTGG	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	155, 224, 412
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	2 cut(s)	260, 465
AfiI	CCNNNNNNNGG	3 cut(s)	12, 268, 521
AgsI	TTSAA	2 cut(s)	155, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	2 cut(s)	107, 293
AluI	AGCT	2 cut(s)	107, 293
Alw26I	GTCTC	1 cut(s)	531
AoxI	GGCC	2 cut(s)	3, 545
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	3 cut(s)	155, 224, 412
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	258, 271
BbvI	GCAGC	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	3 cut(s)	117, 122, 467
BfuAI	ACCTGC	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	260, 273
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	556
BsaI	GGTCTC	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 268, 521
Bse118I	RCCGGY	1 cut(s)	514
BseCI	ATCGAT	1 cut(s)	556
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	12, 268, 521
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	5, 547
BshNI	GGYRCC	2 cut(s)	258, 271
BshVI	ATCGAT	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	12, 515
BslI	CCNNNNNNNGG	3 cut(s)	12, 268, 521
BsmAI	GTCTC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	5, 547
Bso31I	GGTCTC	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	51, 553
BspANI	GGCC	2 cut(s)	5, 547
BspDI	ATCGAT	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	260, 273
BspMI	ACCTGC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	258, 271
BspTNI	GGTCTC	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssMI	GATC	2 cut(s)	51, 553
Bst4CI	ACNGT	6 cut(s)	147, 220, 371, 403, 463, 504
BstF5I	GGATG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	54, 556
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	2 cut(s)	51, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 299
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	5, 547
BsuTUI	ATCGAT	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	236
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	259, 464
CviJI	RGCY	6 cut(s)	5, 107, 203, 293, 514, 547
CviKI_1	RGCY	6 cut(s)	5, 107, 203, 293, 514, 547
CviQI	GTAC	2 cut(s)	259, 464
DpnI	GATC	2 cut(s)	53, 555
DpnII	GATC	2 cut(s)	51, 553
DraI	TTTAAA	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	473
FaiI	YATR	8 cut(s)	84, 264, 285, 315, 347, 374, 376, 476
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	3 cut(s)	117, 122, 467
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	5, 547
HapII	CCGG	2 cut(s)	12, 515
HhaI	GCGC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	12, 515
Hpy188I	TCNGA	2 cut(s)	441, 492
Hpy188III	TCNNGA	3 cut(s)	161, 251, 541
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	6 cut(s)	147, 220, 371, 403, 463, 504
HpyCH4V	TGCA	3 cut(s)	43, 215, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 299
HspAI	GCGC	1 cut(s)	130
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	51, 553
LmnI	GCTCC	2 cut(s)	104, 290
LpnPI	CCDG	5 cut(s)	25, 93, 146, 231, 528
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	117, 122, 467
MalI	GATC	2 cut(s)	53, 555
MboI	GATC	2 cut(s)	51, 553
MboII	GAAGA	2 cut(s)	175, 178
MfeI	CAATTG	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	35, 155, 171, 224, 306, 335, 396, 412, 531
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	82, 362
MnlI	CCTC	2 cut(s)	249, 537
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	320, 393, 416
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	12, 515
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	85, 299
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	51, 553
NlaIV	GGNNCC	2 cut(s)	260, 273
PceI	AGGCCT	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	164
PflFI	GACNNNGTC	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	260, 273
PspPI	GGNCC	1 cut(s)	407
PsyI	GACNNNGTC	1 cut(s)	355
RsaI	GTAC	2 cut(s)	260, 465
RsaNI	GTAC	2 cut(s)	259, 464
SaqAI	TTAA	3 cut(s)	320, 393, 416
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	51, 553
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	5 cut(s)	109, 250, 260, 295, 343
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	407
Sse9I	AATT	9 cut(s)	35, 155, 171, 224, 306, 335, 396, 412, 531
SseBI	AGGCCT	1 cut(s)	547
SspMI	CTAG	3 cut(s)	117, 122, 467
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	6 cut(s)	147, 220, 371, 403, 463, 504
TaqI	TCGA	2 cut(s)	167, 556
TasI	AATT	9 cut(s)	35, 155, 171, 224, 306, 335, 396, 412, 531
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	320, 393, 416
Tru9I	TTAA	3 cut(s)	320, 393, 416
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	139, 334
Tth111I	GACNNNGTC	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	3 cut(s)	155, 224, 412
XspI	CTAG	3 cut(s)	117, 122, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.