Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Forward (+)

14639943 .. 14644234

Gene Structure 4292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCCACCACCGGGAACAAGAACATCAATGCCAAATTGGTGCTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGTTAAAGGACAGTTCATTGAATTTCAGGAATCCACAATTGGTGCTGCCTTCTTCTCGCAAACATTGGCTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGAGGAGCTGCTGCTGCAATAATTGTGTATGATTTAACTAACCAAGTGAGTCCATTTATCCACATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

103

Amino Acids

11.24

Weight (kDa)

6.71

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 93	1.8e-08	ADP-ribosylation factor family
Ras	PF00071	12 - 97	1.8e-32	Ras family
Roc	PF08477	12 - 94	1.3e-27	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	2 cut(s)	213, 226
AccB7I	CCANNNNNTGG	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	110, 179
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	12, 223
AgsI	TTSAA	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	2 cut(s)	62, 248
AluI	AGCT	2 cut(s)	62, 248
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	134, 248, 251, 254
ApoI	RAATTY	2 cut(s)	110, 179
Asp718I	GGTACC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	87, 229
AsuC2I	CCSGG	1 cut(s)	13
BaeI	ACNNNNGTAYC	2 cut(s)	205, 238
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	213, 226
BbvI	GCAGC	4 cut(s)	121, 235, 238, 241
BciVI	GTATCC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	2 cut(s)	72, 77
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	135, 249, 252, 255
BlsI	GCNGC	4 cut(s)	136, 250, 253, 256
Bme1390I	CCNGG	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	215, 228
BmrFI	CCNGG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 223
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	12, 223
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	4 cut(s)	121, 235, 238, 241
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	213, 226
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	12, 223
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	215, 228
BspMI	ACCTGC	1 cut(s)	191
BspT107I	GGYRCC	2 cut(s)	213, 226
BssNI	GRCGYC	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	102, 175
BstACI	GRCGYC	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	87, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	4 cut(s)	121, 235, 238, 241
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	191
CfoI	GCGC	2 cut(s)	87, 229
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	4 cut(s)	5, 62, 158, 248
CviKI_1	RGCY	4 cut(s)	5, 62, 158, 248
CviQI	GTAC	1 cut(s)	214
DinI	GGCGCC	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	3
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
FaiI	YATR	3 cut(s)	219, 240, 270
Fnu4HI	GCNGC	4 cut(s)	135, 249, 252, 255
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	4 cut(s)	135, 249, 252, 255
FspBI	CTAG	2 cut(s)	72, 77
GlaI	GCGC	2 cut(s)	86, 228
GluI	GCNGC	4 cut(s)	135, 249, 252, 255
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	87, 229
Hin1I	GRCGYC	1 cut(s)	227
Hin6I	GCGC	2 cut(s)	85, 227
HinP1I	GCGC	2 cut(s)	85, 227
HinfI	GANTC	2 cut(s)	119, 289
HpaII	CCGG	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	116, 206
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	102, 175
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	227
HspAI	GCGC	2 cut(s)	85, 227
KasI	GGCGCC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	59, 245
LpnPI	CCDG	4 cut(s)	25, 48, 101, 186
Lsp1109I	GCAGC	4 cut(s)	121, 235, 238, 241
MaeI	CTAG	2 cut(s)	72, 77
MboII	GAAGA	1 cut(s)	133
MfeI	CAATTG	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	35, 110, 126, 179, 261
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	204, 236
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	93, 275, 310
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	254
NarI	GGCGCC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	215, 228
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	136, 250, 253, 256
PleI	GAGTC	1 cut(s)	297
PluTI	GGCGCC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	215, 228
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	93, 275, 310
SatI	GCNGC	4 cut(s)	135, 249, 252, 255
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	4 cut(s)	64, 205, 215, 250
SfoI	GGCGCC	1 cut(s)	228
Sse9I	AATT	5 cut(s)	35, 110, 126, 179, 261
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	72, 77
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	102, 175
TasI	AATT	5 cut(s)	35, 110, 126, 179, 261
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	93, 275, 310
Tru9I	TTAA	3 cut(s)	93, 275, 310
TseI	GCWGC	4 cut(s)	134, 248, 251, 254
TspDTI	ATGAA	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	110, 179
XspI	CTAG	2 cut(s)	72, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.