Rmu_sc0008232.1_g000017

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008232.1
OG0007069
Physical Location & Seq
Forward (+)
49083 .. 49456
374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008232.1_g000017.1.cds

Sequence Viewer

Length: 294 bp
atgtttgatattgtgctgtatgtgcttcttggggatgttggagctggaaagtctagtctagtgttgcgctttgctaaaggacagttcattgaatttcaggaatcgacaattggtgctatcttcttctcgcaaacattggctgtaaatgatgcaactgtaaaatttgagatttgggatacagcaggtcaagagaggtaccatagtttggcgccaatgtattataggggagctgctgttgcaataattgtgtatgatttaactaaccaagtgagtccatttatccacattctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

97

Amino Acids

10.81

Weight (kDa)

5.07

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 2 cut(s) 195, 208
AccB7I CCANNNNNTGG 1 cut(s) 205
AcsI RAATTY 2 cut(s) 92, 161
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 2 cut(s) 44, 230
AluI AGCT 2 cut(s) 44, 230
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 92, 161
Asp718I GGTACC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 69, 211
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BanI GGYRCC 2 cut(s) 195, 208
BbvI GCAGC 1 cut(s) 217
BciVI GTATCC 1 cut(s) 169
BfaI CTAG 2 cut(s) 54, 59
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 197, 210
BmsI GCATC 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 217
BshNI GGYRCC 2 cut(s) 195, 208
BslI CCNNNNNNNGG 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 197, 210
BspMI ACCTGC 1 cut(s) 173
BspT107I GGYRCC 2 cut(s) 195, 208
BssNI GRCGYC 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 84, 157
BstACI GRCGYC 1 cut(s) 209
BstF5I GGATG 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 2 cut(s) 69, 211
BstMWI GCNNNNNNNGC 2 cut(s) 22, 236
BstV1I GCAGC 1 cut(s) 217
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 173
CfoI GCGC 2 cut(s) 69, 211
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 3 cut(s) 44, 140, 230
CviKI_1 RGCY 3 cut(s) 44, 140, 230
CviQI GTAC 1 cut(s) 196
DinI GGCGCC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
FaiI YATR 4 cut(s) 21, 201, 222, 252
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 54, 59
GlaI GCGC 2 cut(s) 68, 210
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 212
HhaI GCGC 2 cut(s) 69, 211
Hin1I GRCGYC 1 cut(s) 209
Hin6I GCGC 2 cut(s) 67, 209
HinP1I GCGC 2 cut(s) 67, 209
HinfI GANTC 2 cut(s) 101, 271
Hpy188III TCNNGA 2 cut(s) 98, 188
HpyCH4III ACNGT 2 cut(s) 84, 157
HpyCH4V TGCA 2 cut(s) 152, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 236
Hsp92I GRCGYC 1 cut(s) 209
HspAI GCGC 2 cut(s) 67, 209
KasI GGCGCC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 41, 227
LpnPI CCDG 3 cut(s) 30, 83, 168
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 54, 59
MboII GAAGA 2 cut(s) 112, 115
MfeI CAATTG 1 cut(s) 108
MluCI AATT 4 cut(s) 92, 108, 161, 243
Mly113I GGCGCC 1 cut(s) 209
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 1 cut(s) 186
MseI TTAA 2 cut(s) 257, 292
MunI CAATTG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 22, 236
NarI GGCGCC 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 197, 210
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 279
PluTI GGCGCC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 197, 210
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 257, 292
SatI GCNGC 1 cut(s) 231
SchI GAGTC 1 cut(s) 280
SetI ASST 4 cut(s) 46, 187, 197, 232
SfaNI GCATC 1 cut(s) 139
SfoI GGCGCC 1 cut(s) 210
SgeI CNNG 9 cut(s) 41, 57, 66, 71, 110, 139, 195, 200, 278
Sse9I AATT 4 cut(s) 92, 108, 161, 243
SspDI GGCGCC 1 cut(s) 208
SspMI CTAG 2 cut(s) 54, 59
TaaI ACNGT 2 cut(s) 84, 157
TaqI TCGA 1 cut(s) 104
TasI AATT 4 cut(s) 92, 108, 161, 243
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 257, 292
Tru9I TTAA 2 cut(s) 257, 292
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 205
XapI RAATTY 2 cut(s) 92, 161
XspI CTAG 2 cut(s) 54, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.