Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

46895478 .. 46952805

Gene Structure 57328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAAGTACCACCGACAAGGCTGCTCAGGTTATTGTTGTCTATAACCCTCTGGCATGGAAAAGAGAGGATGTGATAAAGATTCCTGTTGTCAGTGAAAATGTCACTGTAAAGGACTCCACAGGAAAGAAACTTGAATCACAGATTCTACCCCTGCTTAATGCATCTCAACTGTGCTGCCTCTTGGTTTTAGCACTTGCATTGTCTCAAGTGCCTCCACACAGACAGGCTACTACTTCAGAGAGACGTACAGTGTACAAGACTGAAACAAGTCAAAATGATACAATCAAAGTCGGGCCAGGAAACTTGAAACTCATTTACTCTGGAAATGATGGAAAACTAACTCAGTACAAGAAGTCAAGAACAGCAGAAGCTCAAGAAGTTTGTTATTTGTTGATTTTGCATTTTTATAATAGTAGTCACAAGATGCGCTGTTCCAATGTGTCTAACATCCAAAAGCCTACTACTGATTTACTCACTTTGAATTCTTTGGTTTTGTTATGCTTTTTTGTTTGTAATGTGCTCATGATACTCACGGAAAGACGTGAGGCACGAACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

187

Amino Acids

20.97

Weight (kDa)

9.35

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	4 cut(s)	10, 250, 257, 350
AgsI	TTSAA	3 cut(s)	137, 310, 484
AjiI	CACGTC	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	2 cut(s)	210, 238
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	23, 177
ApoI	RAATTY	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	10, 164
BccI	CCATC	1 cut(s)	326
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	210, 238
BisI	GCNGC	2 cut(s)	24, 178
BlsI	GCNGC	2 cut(s)	25, 179
Bme1390I	CCNGG	1 cut(s)	300
BmgBI	CACGTC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	173, 417
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	192, 360
BseBI	CCWGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	76, 450
BseMII	CTCAG	2 cut(s)	41, 359
BseXI	GCAGC	2 cut(s)	10, 164
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	525
BsmAI	GTCTC	2 cut(s)	210, 238
BsmBI	CGTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp1407I	TGTACA	1 cut(s)	255
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	2 cut(s)	40, 358
BspHI	TCATGA	1 cut(s)	525
BsrGI	TGTACA	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	109, 174, 253
BstAUI	TGTACA	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	27, 345
BstF5I	GGATG	2 cut(s)	76, 450
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	2 cut(s)	210, 238
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	10, 164
BsuRI	GGCC	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	76, 450
BtsIMutI	CAGTG	3 cut(s)	100, 105, 258
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	4 cut(s)	9, 249, 256, 349
CviAII	CATG	2 cut(s)	57, 526
CviJI	RGCY	5 cut(s)	23, 230, 298, 374, 460
CviKI_1	RGCY	5 cut(s)	23, 230, 298, 374, 460
CviQI	GTAC	4 cut(s)	9, 249, 256, 349
DdeI	CTNAG	2 cut(s)	27, 345
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	2 cut(s)	60, 529
FaiI	YATR	5 cut(s)	45, 58, 411, 502, 527
FatI	CATG	2 cut(s)	56, 525
Fnu4HI	GCNGC	2 cut(s)	24, 178
FokI	GGATG	2 cut(s)	83, 437
Fsp4HI	GCNGC	2 cut(s)	24, 178
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	2 cut(s)	24, 178
HaeIII	GGCC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	60, 529
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	4 cut(s)	82, 116, 137, 145
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	4 cut(s)	324, 360, 377, 526
Hpy8I	GTNNAC	1 cut(s)	256
HpyCH4III	ACNGT	3 cut(s)	109, 174, 253
HpyCH4IV	ACGT	2 cut(s)	247, 544
HpyCH4V	TGCA	3 cut(s)	164, 200, 403
HpyF3I	CTNAG	2 cut(s)	27, 345
HpySE526I	ACGT	2 cut(s)	247, 544
Hsp92II	CATG	2 cut(s)	60, 529
HspAI	GCGC	1 cut(s)	430
LpnPI	CCDG	9 cut(s)	14, 38, 99, 108, 167, 212, 285, 309, 312
Lsp1109I	GCAGC	2 cut(s)	10, 164
LweI	GCATC	2 cut(s)	173, 417
MaeII	ACGT	2 cut(s)	247, 544
MaeIII	GTNAC	2 cut(s)	103, 419
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	5 cut(s)	60, 61, 191, 225, 541
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
NlaIII	CATG	2 cut(s)	60, 529
NmuCI	GTSAC	2 cut(s)	103, 419
NsiI	ATGCAT	1 cut(s)	166
PagI	TCATGA	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	550
PfeI	GAWTC	3 cut(s)	82, 137, 145
PkrI	GCNGC	2 cut(s)	25, 179
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	296
RsaI	GTAC	4 cut(s)	10, 250, 257, 350
RsaNI	GTAC	4 cut(s)	9, 249, 256, 349
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	24, 178
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	525
SetI	ASST	4 cut(s)	33, 250, 376, 547
SfaNI	GCATC	2 cut(s)	173, 417
SmlI	CTYRAG	2 cut(s)	207, 375
SmoI	CTYRAG	2 cut(s)	207, 375
Sse9I	AATT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	109, 174, 253
TaiI	ACGT	2 cut(s)	250, 547
TasI	AATT	1 cut(s)	484
TatI	WGTACW	2 cut(s)	255, 348
TfiI	GAWTC	3 cut(s)	82, 137, 145
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	3 cut(s)	100, 112, 258
TseFI	GTSAC	2 cut(s)	103, 419
TseI	GCWGC	2 cut(s)	23, 177
Tsp45I	GTSAC	2 cut(s)	103, 419
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	3 cut(s)	100, 112, 258
XapI	RAATTY	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.