Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

1223881 .. 1226732

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG008600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCACCACTGGGAACAAGAACATCAATGCCAAATTGGTGCTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGCTAAAGGACAGTTCATTGAATTTCAGGAATCGACAATTGGTGCTACCTTCTTCTCGCAAACATTGGCTGTAAATGACGCAACTGTAACATTTGAGATTTGGGATATAGCAGGTCAAGAGACGTACCATAGTTTGGCGCCAATTGCATACGCTTTTGAATTCAGGCAATACGAACACTGGATTGCAGTTGCCAACATGAGATCATCAAGATTGGGAATCAAGAAGGGGGGATTTGCAACATATTTGGGATCAGTAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

117

Amino Acids

12.83

Weight (kDa)

9.05

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 72	2.1e-06	ADP-ribosylation factor family
Ras	PF00071	12 - 80	6.5e-21	Ras family
Roc	PF08477	12 - 80	5.3e-19	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	223
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	110, 248
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	12, 223
AgsI	TTSAA	2 cut(s)	110, 248
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	110, 248
AspLEI	GCGC	2 cut(s)	87, 229
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	72, 77
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 223
Bse1I	ACTGG	2 cut(s)	16, 272
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	12, 223
BseNI	ACTGG	2 cut(s)	16, 272
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	12, 223
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	290, 338
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	16, 272
BssMI	GATC	2 cut(s)	290, 338
BssNI	GRCGYC	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	102, 175
BstACI	GRCGYC	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	87, 229
BstKTI	GATC	2 cut(s)	293, 341
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	290, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	9, 265
BveI	ACCTGC	1 cut(s)	191
CfoI	GCGC	2 cut(s)	87, 229
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	3 cut(s)	5, 62, 158
CviKI_1	RGCY	3 cut(s)	5, 62, 158
CviQI	GTAC	1 cut(s)	214
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	2 cut(s)	292, 340
DpnII	GATC	2 cut(s)	290, 338
EaeI	YGGCCR	1 cut(s)	3
EcoRI	GAATTC	1 cut(s)	248
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	1 cut(s)	289
FaiI	YATR	5 cut(s)	197, 219, 238, 287, 331
FatI	CATG	1 cut(s)	285
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	2 cut(s)	72, 77
GlaI	GCGC	2 cut(s)	86, 228
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	87, 229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	85, 227
HinP1I	GCGC	2 cut(s)	85, 227
HinfI	GANTC	2 cut(s)	119, 306
Hpy188III	TCNNGA	4 cut(s)	116, 206, 297, 310
HpyAV	CCTTC	2 cut(s)	148, 307
HpyCH4III	ACNGT	2 cut(s)	102, 175
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	236, 275, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	85, 227
KasI	GGCGCC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	290, 338
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	5 cut(s)	48, 101, 186, 238, 253
MaeI	CTAG	2 cut(s)	72, 77
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	292, 340
MboI	GATC	2 cut(s)	290, 338
MboII	GAAGA	1 cut(s)	133
MfeI	CAATTG	2 cut(s)	126, 231
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	35, 110, 126, 231, 248
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	37
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	2 cut(s)	126, 231
MwoI	GCNNNNNNNGC	1 cut(s)	233
NarI	GGCGCC	1 cut(s)	227
NdeII	GATC	2 cut(s)	290, 338
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	119, 306
PflMI	CCANNNNNTGG	1 cut(s)	223
PluTI	GGCGCC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	228
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	290, 338
SetI	ASST	4 cut(s)	64, 140, 205, 215
SfoI	GGCGCC	1 cut(s)	228
Sse9I	AATT	5 cut(s)	35, 110, 126, 231, 248
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	72, 77
TaaI	ACNGT	2 cut(s)	102, 175
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	122
TasI	AATT	5 cut(s)	35, 110, 126, 231, 248
TfiI	GAWTC	2 cut(s)	119, 306
TscAI	CASTG	2 cut(s)	16, 272
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	16, 272
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	110, 248
XspI	CTAG	2 cut(s)	72, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.