Rmu_sc0010017.1_g000006

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010017.1
OG0007069
Physical Location & Seq
Reverse (-)
27450 .. 29359
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010017.1_g000006.1.cds

Sequence Viewer

Length: 597 bp
atgtttgatattgtgctgcaggtgcttcttacggatgttggagctggaaagtctagtctagtgttgcgctctgttaaaggacagttcattgaatttcaggaattgacaattggtgctgccttcttctcgcaaacattggctgtaaatgacgcaactgtaaaatttgagatttgggatacaacaggtcaagagaggtaccatagtttggcgccaatgtattatagaggagctactactgcaataattgtgtatgaattaactaaccaaaaggtttttgttgttttcttgcaagctaatctgttctctgatttgcttcaaagggatgtaagacgtcattctgctctttgtgctggcttgctgcaagaaaatggatccttctcatggatgaccacaatagcattctcatggatccttctcattgtgctggatatcattctcatggatgcccacaatagcaaagaaaattttaatcatgctttgggttatgcatatatactcacgcaccctagaataccttccatcttctttgaccacttttatgattcaggtgattctattcatgatcagattgtgaaactggtacagcagtatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

198

Amino Acids

22.51

Weight (kDa)

5.54

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
AatII GACGTC 1 cut(s) 334
Acc36I ACCTGC 1 cut(s) 10
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 2 cut(s) 195, 208
AccB7I CCANNNNNTGG 1 cut(s) 205
AclWI GGATC 4 cut(s) 366, 379, 403, 416
AcsI RAATTY 3 cut(s) 92, 161, 463
AcyI GRCGYC 2 cut(s) 209, 331
AfaI GTAC 2 cut(s) 197, 582
AfiI CCNNNNNNNGG 2 cut(s) 205, 381
AgsI TTSAA 2 cut(s) 92, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 4 cut(s) 44, 230, 293, 594
AluI AGCT 4 cut(s) 44, 230, 293, 594
AlwI GGATC 4 cut(s) 366, 379, 403, 416
ApeKI GCWGC 3 cut(s) 16, 116, 358
ApoI RAATTY 3 cut(s) 92, 161, 463
Asp700I GAANNNNTTC 1 cut(s) 514
Asp718I GGTACC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 69, 211
AsuHPI GGTGA 1 cut(s) 560
BaeI ACNNNNGTAYC 3 cut(s) 187, 220, 572
BamHI GGATCC 2 cut(s) 371, 408
BanI GGYRCC 2 cut(s) 195, 208
BbvI GCAGC 3 cut(s) 3, 103, 345
BccI CCATC 1 cut(s) 527
BciVI GTATCC 1 cut(s) 169
BclI TGATCA 1 cut(s) 562
BfaI CTAG 4 cut(s) 54, 59, 507, 595
BfmI CTRYAG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 10
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 3 cut(s) 17, 117, 359
BlsI GCNGC 3 cut(s) 18, 118, 360
BmiI GGNNCC 4 cut(s) 197, 210, 373, 410
BmsI GCATC 1 cut(s) 433
BsaHI GRCGYC 2 cut(s) 209, 331
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 381
Bse1I ACTGG 1 cut(s) 582
BseGI GGATG 4 cut(s) 40, 328, 390, 448
BseLI CCNNNNNNNGG 2 cut(s) 205, 381
BseNI ACTGG 1 cut(s) 582
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 3, 103, 345
BshNI GGYRCC 2 cut(s) 195, 208
BslI CCNNNNNNNGG 2 cut(s) 205, 381
BsmI GAATGC 1 cut(s) 398
Bsp143I GATC 3 cut(s) 371, 408, 562
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 4 cut(s) 197, 210, 373, 410
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 4 cut(s) 366, 379, 403, 416
BspT107I GGYRCC 2 cut(s) 195, 208
BsrI ACTGG 1 cut(s) 582
BssMI GATC 3 cut(s) 371, 408, 562
BssNI GRCGYC 2 cut(s) 209, 331
Bst4CI ACNGT 2 cut(s) 84, 157
BstACI GRCGYC 2 cut(s) 209, 331
BstC8I GCNNGC 3 cut(s) 291, 352, 356
BstF5I GGATG 4 cut(s) 40, 328, 390, 448
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 2 cut(s) 69, 211
BstKTI GATC 3 cut(s) 374, 411, 565
BstMBI GATC 3 cut(s) 371, 408, 562
BstMWI GCNNNNNNNGC 3 cut(s) 22, 236, 347
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 3, 103, 345
BstX2I RGATCY 2 cut(s) 371, 408
BstYI RGATCY 2 cut(s) 371, 408
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 40, 328, 390, 448
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 3 cut(s) 291, 352, 356
CciI TCATGA 1 cut(s) 559
CfoI GCGC 2 cut(s) 69, 211
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 196, 581
CviAII CATG 5 cut(s) 381, 405, 439, 473, 560
CviJI RGCY 6 cut(s) 44, 140, 230, 293, 354, 594
CviKI_1 RGCY 6 cut(s) 44, 140, 230, 293, 354, 594
CviQI GTAC 2 cut(s) 196, 581
DinI GGCGCC 1 cut(s) 210
DpnI GATC 3 cut(s) 373, 410, 564
DpnII GATC 3 cut(s) 371, 408, 562
Eco32I GATATC 1 cut(s) 430
EcoRV GATATC 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 490
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
FaeI CATG 5 cut(s) 384, 408, 442, 476, 563
FatI CATG 5 cut(s) 380, 404, 438, 472, 559
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 3 cut(s) 17, 117, 359
FokI GGATG 4 cut(s) 47, 335, 397, 455
Fsp4HI GCNGC 3 cut(s) 17, 117, 359
FspBI CTAG 4 cut(s) 54, 59, 507, 595
GlaI GCGC 2 cut(s) 68, 210
GluI GCNGC 3 cut(s) 17, 117, 359
HaeII RGCGCY 1 cut(s) 212
HgaI GACGC 1 cut(s) 158
HhaI GCGC 2 cut(s) 69, 211
Hin1I GRCGYC 2 cut(s) 209, 331
Hin1II CATG 5 cut(s) 384, 408, 442, 476, 563
Hin6I GCGC 2 cut(s) 67, 209
HinP1I GCGC 2 cut(s) 67, 209
HinfI GANTC 2 cut(s) 542, 551
HphI GGTGA 1 cut(s) 560
Hpy188I TCNGA 2 cut(s) 307, 567
Hpy188III TCNNGA 3 cut(s) 98, 188, 560
HpyAV CCTTC 4 cut(s) 130, 385, 422, 525
HpyCH4III ACNGT 2 cut(s) 84, 157
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 5 cut(s) 19, 239, 289, 361, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 236, 347
HpySE526I ACGT 1 cut(s) 331
Hsp92I GRCGYC 2 cut(s) 209, 331
Hsp92II CATG 5 cut(s) 384, 408, 442, 476, 563
HspAI GCGC 2 cut(s) 67, 209
KasI GGCGCC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 371, 408, 562
LmnI GCTCC 2 cut(s) 41, 227
LpnPI CCDG 8 cut(s) 5, 30, 83, 168, 336, 410, 531, 563
Lsp1109I GCAGC 3 cut(s) 3, 103, 345
LweI GCATC 1 cut(s) 433
MaeI CTAG 4 cut(s) 54, 59, 507, 595
MaeII ACGT 1 cut(s) 331
MalI GATC 3 cut(s) 373, 410, 564
MboI GATC 3 cut(s) 371, 408, 562
MboII GAAGA 2 cut(s) 115, 514
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 2 cut(s) 371, 408
MluCI AATT 7 cut(s) 92, 101, 108, 161, 243, 254, 463
Mly113I GGCGCC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 2 cut(s) 186, 218
Mph1103I ATGCAT 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 3 cut(s) 75, 257, 468
MslI CAYNNNNRTG 3 cut(s) 403, 437, 537
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 398
MwoI GCNNNNNNNGC 3 cut(s) 22, 236, 347
NarI GGCGCC 1 cut(s) 209
NdeII GATC 3 cut(s) 371, 408, 562
NlaIII CATG 5 cut(s) 384, 408, 442, 476, 563
NlaIV GGNNCC 4 cut(s) 197, 210, 373, 410
NsiI ATGCAT 1 cut(s) 490
PagI TCATGA 1 cut(s) 559
PaqCI CACCTGC 1 cut(s) 10
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 542, 551
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 3 cut(s) 18, 118, 360
PluTI GGCGCC 1 cut(s) 212
PspN4I GGNNCC 4 cut(s) 197, 210, 373, 410
PstI CTGCAG 1 cut(s) 21
PsuI RGATCY 2 cut(s) 371, 408
RsaI GTAC 2 cut(s) 197, 582
RsaNI GTAC 2 cut(s) 196, 581
RseI CAYNNNNRTG 3 cut(s) 403, 437, 537
SaqAI TTAA 3 cut(s) 75, 257, 468
SatI GCNGC 3 cut(s) 17, 117, 359
Sau3AI GATC 3 cut(s) 371, 408, 562
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 17
SfoI GGCGCC 1 cut(s) 210
SmiMI CAYNNNNRTG 3 cut(s) 403, 437, 537
Sse9I AATT 7 cut(s) 92, 101, 108, 161, 243, 254, 463
SspDI GGCGCC 1 cut(s) 208
SspMI CTAG 4 cut(s) 54, 59, 507, 595
TaaI ACNGT 2 cut(s) 84, 157
TaiI ACGT 1 cut(s) 334
TasI AATT 7 cut(s) 92, 101, 108, 161, 243, 254, 463
TfiI GAWTC 2 cut(s) 542, 551
Tru1I TTAA 3 cut(s) 75, 257, 468
Tru9I TTAA 3 cut(s) 75, 257, 468
TseI GCWGC 3 cut(s) 16, 116, 358
TspDTI ATGAA 3 cut(s) 76, 267, 548
TspGWI ACGGA 1 cut(s) 47
Van91I CCANNNNNTGG 1 cut(s) 205
XapI RAATTY 3 cut(s) 92, 161, 463
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 4 cut(s) 54, 59, 507, 595
ZraI GACGTC 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.