Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Forward (+)

60081839 .. 60086972

Gene Structure 5134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCACCACTGGGAACAAGAACATCAATGCCAAATTGTTGCATTTTGTGATCGTTAGAGTGATGTTTGATATTGTGCTGTATGTGTTTCTTGGGGATGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGCGCTTTGCTAAAGGACAGTTCATTGAATTTCAGGAATCGACAATTGGTGCTATCTTCTTCTCGCAAACATTGGCTGTAAATGATGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGGGGAGCTGCTGTTGCAATAATTGTGTATGATTTAACTAACCAACTGGCCTTATGTTTTCTGTCTTGGCTTTCGTTTAATAGAGTAAAAAGGATTTTAAGTTGGTTAGTGAAACAAGATTTAGTATTAATACACGACACCGTACTAGATGACAGATTTTATTTCCTTCAGACGACAGAACTGTTCTGTCGTCTGATGCACTTTTTGCCACAGAAGCAGCCCATTTCATGCACAAGCTCCGAACTCAAGAAGCAGGTTTTTTCTCTCTCAAACTTGATATTAGTAAGGCCTATGACATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

195

Amino Acids

22.32

Weight (kDa)

8.91

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	29 - 112	4.6e-29	Ras family
Roc	PF08477	29 - 110	8.1e-25	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	29 - 108	7.8e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	236, 529
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	258, 271
AccB7I	CCANNNNNTGG	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	155, 224
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	2 cut(s)	260, 429
AfiI	CCNNNNNNNGG	2 cut(s)	12, 268
AgsI	TTSAA	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	3 cut(s)	107, 293, 522
AluI	AGCT	3 cut(s)	107, 293, 522
AoxI	GGCC	3 cut(s)	3, 333, 572
ApeKI	GCWGC	2 cut(s)	293, 502
ApoI	RAATTY	2 cut(s)	155, 224
AseI	ATTAAT	1 cut(s)	413
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	132, 274
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	258, 271
BbvI	GCAGC	2 cut(s)	280, 514
BciVI	GTATCC	1 cut(s)	232
BfaI	CTAG	4 cut(s)	117, 122, 431, 586
BfoI	RGCGCY	1 cut(s)	275
BfuAI	ACCTGC	2 cut(s)	236, 529
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	294, 503
BlsI	GCNGC	2 cut(s)	295, 504
BmiI	GGNNCC	2 cut(s)	260, 273
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	202, 471
BmuI	ACTGGG	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 268
Bse1I	ACTGG	2 cut(s)	16, 336
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	12, 268
BseNI	ACTGG	2 cut(s)	16, 336
BseXI	GCAGC	2 cut(s)	280, 514
BshFI	GGCC	3 cut(s)	5, 335, 574
BshNI	GGYRCC	2 cut(s)	258, 271
BslI	CCNNNNNNNGG	2 cut(s)	12, 268
BsnI	GGCC	3 cut(s)	5, 335, 574
Bsp143I	GATC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	5, 335, 574
BspLI	GGNNCC	2 cut(s)	260, 273
BspMI	ACCTGC	2 cut(s)	236, 529
BspT107I	GGYRCC	2 cut(s)	258, 271
BsrI	ACTGG	2 cut(s)	16, 336
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	272
Bst4CI	ACNGT	4 cut(s)	147, 220, 427, 468
BstACI	GRCGYC	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	132, 274
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 490, 499
BstNSI	RCATGY	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	280, 514
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	5, 335, 574
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	2 cut(s)	236, 529
CfoI	GCGC	2 cut(s)	132, 274
Csp6I	GTAC	2 cut(s)	259, 428
CviAII	CATG	2 cut(s)	513, 582
CviJI	RGCY	9 cut(s)	5, 107, 203, 293, 335, 355, 505, 522, 574
CviKI_1	RGCY	9 cut(s)	5, 107, 203, 293, 335, 355, 505, 522, 574
CviQI	GTAC	2 cut(s)	259, 428
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	437
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
FaeI	CATG	2 cut(s)	516, 585
FaiI	YATR	8 cut(s)	84, 264, 285, 315, 340, 514, 578, 583
FatI	CATG	2 cut(s)	512, 581
Fnu4HI	GCNGC	2 cut(s)	294, 503
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	294, 503
FspBI	CTAG	4 cut(s)	117, 122, 431, 586
GlaI	GCGC	2 cut(s)	131, 273
GluI	GCNGC	2 cut(s)	294, 503
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	5, 335, 574
HhaI	GCGC	2 cut(s)	132, 274
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	516, 585
Hin6I	GCGC	2 cut(s)	130, 272
HinP1I	GCGC	2 cut(s)	130, 272
HinfI	GANTC	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	456, 480, 526
Hpy188III	TCNNGA	3 cut(s)	161, 251, 532
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	4 cut(s)	147, 220, 427, 468
HpyCH4V	TGCA	5 cut(s)	43, 215, 302, 484, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 490, 499
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	516, 585
HspAI	GCGC	2 cut(s)	130, 272
KasI	GGCGCC	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	104, 290, 527
LpnPI	CCDG	5 cut(s)	93, 146, 231, 317, 524
Lsp1109I	GCAGC	2 cut(s)	280, 514
LweI	GCATC	2 cut(s)	202, 471
MaeI	CTAG	4 cut(s)	117, 122, 431, 586
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	175, 178
MfeI	CAATTG	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	35, 155, 171, 224, 306
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	320, 363, 383, 413
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	299, 490, 499
NarI	GGCGCC	1 cut(s)	272
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	516, 585
NlaIV	GGNNCC	2 cut(s)	260, 273
NspI	RCATGY	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	295, 504
PluTI	GGCGCC	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	260, 273
RsaI	GTAC	2 cut(s)	260, 429
RsaNI	GTAC	2 cut(s)	259, 428
SaqAI	TTAA	4 cut(s)	320, 363, 383, 413
SatI	GCNGC	2 cut(s)	294, 503
Sau3AI	GATC	1 cut(s)	51
SetI	ASST	6 cut(s)	109, 250, 260, 295, 524, 543
SfaNI	GCATC	2 cut(s)	202, 471
SfoI	GGCGCC	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	5 cut(s)	35, 155, 171, 224, 306
SseBI	AGGCCT	1 cut(s)	574
SspDI	GGCGCC	1 cut(s)	271
SspMI	CTAG	4 cut(s)	117, 122, 431, 586
StuI	AGGCCT	1 cut(s)	574
TaaI	ACNGT	4 cut(s)	147, 220, 427, 468
TaqI	TCGA	1 cut(s)	167
TasI	AATT	5 cut(s)	35, 155, 171, 224, 306
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	4 cut(s)	320, 363, 383, 413
Tru9I	TTAA	4 cut(s)	320, 363, 383, 413
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	2 cut(s)	293, 502
TspDTI	ATGAA	2 cut(s)	139, 501
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	413
XapI	RAATTY	2 cut(s)	155, 224
XceI	RCATGY	1 cut(s)	585
XspI	CTAG	4 cut(s)	117, 122, 431, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.