Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000083.1

Orthogroup ID

OG0007069

Physical Location & Seq

Genomic Coordinates Reverse (-)

49737 .. 51352

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000083.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggagtttgtgaggtccttgttgaaaaaattcaagtccaaagagaaggtgaagtcttcaaagagtagggatacaagaggtaatgggaaagaggcttcaaaaggaccaacagcaacggaagaagtaccttcaaatgtaacaaagcagaaggttgcagctgcaaagcagtatatagagaatcattacaagaagcaaatgaaaagtttgcaggagaagaagaagcgagtgatgtttgatattgtgctgcaggtgcttcttggggatgttggagctggaaagtctagtctagtgttgacctttgctaaaggacagttcattgaatttcaggaatcgacaattggtgctgccttcttctcgcaaacattggctgtaaatgacgcaactgtaaaatttgagatttgggatacaacaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

9.81

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT4G19640
fragaria_vesca	FvH4_3g11910
malus_domestica	MD00G1046600.v1.1 MD01G1006200.v1.1 MD15G1186500.v1.1
pyrus_communis	pycom05g24470
rosa_laevigata	RLG00000036433
rosa_multiflora	Rmu_sc0000083.1_g000004 Rmu_sc0008232.1_g000017 Rmu_sc0010017.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056390 Rroxscaffold_5G00345420
rosa_samantha	Rh1DG039100 Rh4CG034000 Rh5AG141200 Rh5AG279100 Rh5BG336400 Rh6BG008600 Rh6BG252700 Rh7CG226700
rosa_wichuraiana	Rw1G009000 Rw3G019420 Rw4G002470 Rw7G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
AcsI	RAATTY	3 cut(s)	29, 320, 389
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	6 cut(s)	25, 34, 60, 99, 132, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	2 cut(s)	158, 272
AluI	AGCT	2 cut(s)	158, 272
ApeKI	GCWGC	4 cut(s)	155, 158, 244, 344
ApoI	RAATTY	3 cut(s)	29, 320, 389
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	15, 104
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	15, 104
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	145, 167, 231, 331
BciVI	GTATCC	2 cut(s)	64, 397
BfaI	CTAG	2 cut(s)	282, 287
BfmI	CTRYAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	2 cut(s)	64, 397
BisI	GCNGC	4 cut(s)	156, 159, 245, 345
BlsI	GCNGC	4 cut(s)	157, 160, 246, 346
Bme18I	GGWCC	2 cut(s)	15, 104
BmgT120I	GGNCC	2 cut(s)	15, 104
BpiI	GAAGAC	1 cut(s)	48
BseGI	GGATG	1 cut(s)	268
BseXI	GCAGC	4 cut(s)	145, 167, 231, 331
BspMAI	CTGCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	312, 385
BstF5I	GGATG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	4 cut(s)	145, 167, 231, 331
BstV2I	GAAGAC	1 cut(s)	48
BsuI	GTATCC	2 cut(s)	64, 397
BtsCI	GGATG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	15, 104
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	125
CviJI	RGCY	4 cut(s)	95, 158, 272, 368
CviKI_1	RGCY	4 cut(s)	95, 158, 272, 368
CviQI	GTAC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	15, 104
EcoO109I	RGGNCCY	1 cut(s)	15
FaiI	YATR	2 cut(s)	171, 173
Fnu4HI	GCNGC	4 cut(s)	156, 159, 245, 345
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	4 cut(s)	156, 159, 245, 345
FspBI	CTAG	2 cut(s)	282, 287
GluI	GCNGC	4 cut(s)	156, 159, 245, 345
HgaI	GACGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	178, 329
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	4 cut(s)	40, 138, 142, 358
HpyCH4III	ACNGT	2 cut(s)	312, 385
HpyCH4V	TGCA	4 cut(s)	155, 161, 208, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	194, 233, 258, 311, 396
Lsp1109I	GCAGC	4 cut(s)	145, 167, 231, 331
MaeI	CTAG	2 cut(s)	282, 287
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	5 cut(s)	48, 131, 226, 229, 343
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	4 cut(s)	29, 320, 336, 389
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	6, 71, 85
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	178, 329
PkrI	GCNGC	4 cut(s)	157, 160, 246, 346
PpuMI	RGGWCCY	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	15, 104
PspPPI	RGGWCCY	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	4 cut(s)	156, 159, 245, 345
Sau96I	GGNCC	2 cut(s)	15, 104
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	2 cut(s)	15, 104
Sse9I	AATT	4 cut(s)	29, 320, 336, 389
SspMI	CTAG	2 cut(s)	282, 287
TaaI	ACNGT	2 cut(s)	312, 385
TaqI	TCGA	1 cut(s)	332
TasI	AATT	4 cut(s)	29, 320, 336, 389
TfiI	GAWTC	2 cut(s)	178, 329
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TseI	GCWGC	4 cut(s)	155, 158, 244, 344
TspDTI	ATGAA	2 cut(s)	212, 304
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	15, 104
XapI	RAATTY	3 cut(s)	29, 320, 389
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	282, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.