Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012786

Physical Location & Seq

Genomic Coordinates Reverse (-)

22888826 .. 22891976

Gene Structure 3151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAAGAAGATTATTCCGTCTCGTACGCTTTGCCACATTCCGTTAAAAAAAAAAGGTCATTTGCTTCAGTAAAGGTCTTCGCATTCGAGAAGAGAGAGAGAGAGAGAAGGGTTGTTGGTCTTGGCTTGGCTTTTAGGATCCTTCCTCGATTTGCCGCCTTCTTCTTCTTCTTCTTCTGCTTCTGCTTGCATCAGACCCCATCTTGCCTTCTTCGTCAACGTCTGCGTTCCTCTGCCTCAAATTCTGCTCGATTTTCTGATCTCATCAATTTTCAATCCATTGCACTCATGGCCACCGCCGGGAACAAGAACATCAATGCCAAATTGGTGCTTCTTGGGGATGTTGGAGCTGGGAAGTCTAGTCTGGTGTTGCGCTTTGTAAAAGGACAATTCATTGAATTTCAGGAATCAACAATAGGTGCTGCCTTCTTCTCACAAACATTGGCTGTAAACGATGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTACAGAGGAGCTGCTGCTGCAATTATTGTGTATGATTTAACAAATCAAGCCTCATTTGAGCGAGCAAAAAAATGGGTCCTCGAACTCAAGTCACAAGGTAACCCAAACATGGTTATGGCACTAGCTGGTAATAAAGCGGATCTGGTGGAGGCCAGGAAAGTGCCAGCAGAGGATGCACAATCATATGCTCAAGAGAATGGCCTTTTCTTCCTGGAAACCTCTGCAAAAACTGCAGACAATGTCAATGACATTTTCTATGAGATAGCAAAGAGATTACCTCGAGTGCAGCCTGTGCAGAACCCCGCAGGAATGGTTCTTATGGACAGACCTTCTGAAAGGGTGGCAAGCTCGTCTTGTTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

297

Amino Acids

33.04

Weight (kDa)

9.49

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19640 AT5G45130 AT5G45130
fragaria_vesca	FvH4_3g11910
malus_domestica	MD05G1256700.v1.1 MD10G1237200.v1.1
prunus_persica	Prupe.4G107100_v2.0.a1 Prupe.4G107100_v2.0.a1
pyrus_communis	pycom05g23600 pycom10g19850
rosa_chinensis	RchiOBHm_Chr5g0019441
rosa_laevigata	RLG00000032443
rosa_multiflora	Rmu_sc0002759.1_g000043
rosa_roxburghii	Rroxscaffold_1G00058620 Rroxscaffold_1G00074300
rosa_rugosa	Rorug05G0051000
rosa_samantha	Rh5CG151800
rosa_wichuraiana	Rw5G012560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	501
AccB1I	GGYRCC	2 cut(s)	501, 514
AccB7I	CCANNNNNTGG	1 cut(s)	511
AciI	CCGC	4 cut(s)	156, 297, 662, 828
AclWI	GGATC	3 cut(s)	133, 146, 672
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	3 cut(s)	241, 398, 467
AcuI	CTGAAG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	515
AfaI	GTAC	2 cut(s)	26, 503
AfiI	CCNNNNNNNGG	3 cut(s)	300, 511, 634
AgsI	TTSAA	2 cut(s)	275, 398
AjnI	CCWGG	2 cut(s)	677, 735
AluBI	AGCT	4 cut(s)	350, 536, 650, 873
AluI	AGCT	4 cut(s)	350, 536, 650, 873
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	133, 146, 672
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	3 cut(s)	291, 675, 724
ApeKI	GCWGC	5 cut(s)	422, 536, 539, 542, 811
ApoI	RAATTY	3 cut(s)	241, 398, 467
Asp718I	GGTACC	1 cut(s)	501
AspLEI	GCGC	2 cut(s)	375, 517
AspS9I	GGNCC	1 cut(s)	601
AsuC2I	CCSGG	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	601
BaeI	ACNNNNGTAYC	2 cut(s)	493, 526
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	138
BanI	GGYRCC	2 cut(s)	501, 514
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	5 cut(s)	409, 523, 526, 529, 823
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	679, 737
BciVI	GTATCC	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	360, 647
BfmI	CTRYAG	1 cut(s)	756
BfoI	RGCGCY	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	6 cut(s)	156, 423, 537, 540, 543, 812
BlsI	GCNGC	6 cut(s)	157, 424, 538, 541, 544, 813
Bme1390I	CCNGG	3 cut(s)	301, 679, 737
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	4 cut(s)	140, 503, 516, 602
BmrFI	CCNGG	3 cut(s)	301, 679, 737
BmsI	GCATC	3 cut(s)	199, 445, 688
BpiI	GAAGAC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BpuEI	CTTGAG	2 cut(s)	596, 699
BpuMI	CCSGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 511, 634
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	679, 737
BseGI	GGATG	2 cut(s)	346, 703
BseLI	CCNNNNNNNGG	3 cut(s)	300, 511, 634
BseMI	GCAATG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	5 cut(s)	409, 523, 526, 529, 823
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	2 cut(s)	830, 839
BshFI	GGCC	3 cut(s)	293, 677, 726
BshNI	GGYRCC	2 cut(s)	501, 514
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	1 cut(s)	300
BsiWI	CGTACG	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	300, 511, 634
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	293, 677, 726
BsoBI	CYCGRG	1 cut(s)	804
Bsp143I	GATC	3 cut(s)	138, 259, 664
BspACI	CCGC	4 cut(s)	156, 297, 662, 828
BspANI	GGCC	3 cut(s)	293, 677, 726
BspLI	GGNNCC	4 cut(s)	140, 503, 516, 602
BspMAI	CTGCAG	1 cut(s)	760
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	3 cut(s)	133, 146, 672
BspT107I	GGYRCC	2 cut(s)	501, 514
BsrDI	GCAATG	1 cut(s)	279
BssMI	GATC	3 cut(s)	138, 259, 664
BssNI	GRCGYC	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	679, 737
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	515
BstAPI	GCANNNNNTGC	3 cut(s)	698, 755, 817
BstC8I	GCNNGC	4 cut(s)	188, 588, 690, 871
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	2 cut(s)	346, 703
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	375, 517
BstKTI	GATC	3 cut(s)	141, 262, 667
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	138, 259, 664
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 542, 698, 755, 817
BstNI	CCWGG	2 cut(s)	679, 737
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	3 cut(s)	299, 677, 735
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	5 cut(s)	409, 523, 526, 529, 823
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	138, 664
BstYI	RGATCY	2 cut(s)	138, 664
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	293, 677, 726
BtsCI	GGATG	2 cut(s)	346, 703
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	4 cut(s)	188, 588, 690, 871
CfoI	GCGC	2 cut(s)	375, 517
Cfr13I	GGNCC	1 cut(s)	601
Csp6I	GTAC	2 cut(s)	25, 502
CviAII	CATG	2 cut(s)	289, 634
CviQI	GTAC	2 cut(s)	25, 502
DinI	GGCGCC	1 cut(s)	516
DpnI	GATC	3 cut(s)	140, 261, 666
DpnII	GATC	3 cut(s)	138, 259, 664
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	804
Eco91I	GGTNACC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	601
EcoO65I	GGTNACC	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	677, 735
EgeI	GGCGCC	1 cut(s)	516
EheI	GGCGCC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	292, 637
FalI	AAGNNNNNCTT	1 cut(s)	862
FatI	CATG	2 cut(s)	288, 633
FauI	CCCGC	1 cut(s)	835
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	6 cut(s)	156, 423, 537, 540, 543, 812
FokI	GGATG	2 cut(s)	353, 710
Fsp4HI	GCNGC	6 cut(s)	156, 423, 537, 540, 543, 812
FspBI	CTAG	2 cut(s)	360, 647
GlaI	GCGC	2 cut(s)	374, 516
GluI	GCNGC	6 cut(s)	156, 423, 537, 540, 543, 812
GsaI	CCCAGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	293, 677, 726
HapII	CCGG	1 cut(s)	300
HhaI	GCGC	2 cut(s)	375, 517
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	292, 637
Hin6I	GCGC	2 cut(s)	373, 515
HinP1I	GCGC	2 cut(s)	373, 515
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	300
Hpy166II	GTNNAC	2 cut(s)	218, 451
Hpy188I	TCNGA	3 cut(s)	195, 259, 859
Hpy188III	TCNNGA	4 cut(s)	88, 404, 494, 716
Hpy8I	GTNNAC	2 cut(s)	218, 451
HpyAV	CCTTC	6 cut(s)	102, 152, 169, 218, 436, 864
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	9 cut(s)	190, 284, 458, 545, 701, 749, 758, 811, 820
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 542, 698, 755, 817
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	2 cut(s)	292, 637
HspAI	GCGC	2 cut(s)	373, 515
KasI	GGCGCC	1 cut(s)	514
KpnI	GGTACC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	138, 259, 664
LmnI	GCTCC	2 cut(s)	347, 533
Lsp1109I	GCAGC	5 cut(s)	409, 523, 526, 529, 823
LweI	GCATC	3 cut(s)	199, 445, 688
MaeI	CTAG	2 cut(s)	360, 647
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	615, 623
MalI	GATC	3 cut(s)	140, 261, 666
MboI	GATC	3 cut(s)	138, 259, 664
MflI	RGATCY	2 cut(s)	138, 664
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	7 cut(s)	241, 268, 323, 389, 398, 467, 546
MluNI	TGGCCA	1 cut(s)	293
Mly113I	GGCGCC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	325
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	2 cut(s)	45, 563
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	301, 679, 737
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	679, 737
MwoI	GCNNNNNNNGC	5 cut(s)	290, 542, 698, 755, 817
NarI	GGCGCC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	301
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	3 cut(s)	138, 259, 664
NlaIII	CATG	2 cut(s)	292, 637
NlaIV	GGNNCC	4 cut(s)	140, 503, 516, 602
NmuCI	GTSAC	1 cut(s)	615
PaeR7I	CTCGAG	1 cut(s)	804
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	407
Pfl23II	CGTACG	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	764
PflMI	CCANNNNNTGG	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	735
PkrI	GCNGC	6 cut(s)	157, 424, 538, 541, 544, 813
PluTI	GGCGCC	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	601
Psp5II	RGGWCCY	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	677, 735
PspEI	GGTNACC	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	677, 735
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	140, 503, 516, 602
PspPI	GGNCC	1 cut(s)	601
PspPPI	RGGWCCY	1 cut(s)	601
PspXI	VCTCGAGB	1 cut(s)	804
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	138, 664
PsyI	GACNNNGTC	1 cut(s)	764
RsaI	GTAC	2 cut(s)	26, 503
RsaNI	GTAC	2 cut(s)	25, 502
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	45, 563
SatI	GCNGC	6 cut(s)	156, 423, 537, 540, 543, 812
Sau3AI	GATC	3 cut(s)	138, 259, 664
Sau96I	GGNCC	1 cut(s)	601
ScrFI	CCNGG	3 cut(s)	301, 679, 737
SfaNI	GCATC	3 cut(s)	199, 445, 688
SfcI	CTRYAG	1 cut(s)	756
SfoI	GGCGCC	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	601
SlaI	CTCGAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	3 cut(s)	611, 714, 804
SmoI	CTYRAG	3 cut(s)	611, 714, 804
Sse9I	AATT	7 cut(s)	241, 268, 323, 389, 398, 467, 546
SsiI	CCGC	4 cut(s)	156, 297, 662, 828
SspDI	GGCGCC	1 cut(s)	514
SspMI	CTAG	2 cut(s)	360, 647
StyD4I	CCNGG	3 cut(s)	299, 677, 735
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	5 cut(s)	87, 148, 250, 606, 805
TasI	AATT	7 cut(s)	241, 268, 323, 389, 398, 467, 546
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	45, 563
Tru9I	TTAA	2 cut(s)	45, 563
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	5 cut(s)	422, 536, 539, 542, 811
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	2 cut(s)	17, 382
TspGWI	ACGGA	2 cut(s)	7, 31
Tth111I	GACNNNGTC	1 cut(s)	764
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	3 cut(s)	241, 398, 467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	804
XspI	CTAG	2 cut(s)	360, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.