AT4G19900

Glycosyltransferase sugar-binding region containing DXD motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009629
Physical Location & Seq
Reverse (-)
10789091 .. 10791618
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19900.2

Sequence Viewer

Length: 1935 bp
ATGTTGAGGTCACGGCGTTCACGTTCCCGTCACGGTGCACAAGCTTGCGCCGTTATGTCTGCCGTTCTTCTTCTCGCTTCCGTCTCACTTCTCTACACTCGTCTCTCACTCTTCTCATCTCACTCGCCGAATCACCTCCGCTCTGGCTCCAGCGAAGACACAGTTTTGTTCCCTGATTCTGTCCTCGTCTCAGATTCCGACGTTGAAACCACCGGCGGAGGAGGAAGAGGATCCACTACCTCAACCGAAGACAGAATCGACGAGCACGACGATGCGATCGAAGACGACGGCGTTTCGAATGAGGAAGATGAGAATCAAGACGCAGAGCAAGAGCAAGAAGTGGATCTTAATCGGAACAAGGCTGCTTCATCTTCTGGGTTTTACTTCGATCATGTTAATGGAGTTATAAGAAGAGCTTTCAATAAACGATCTATAGATGAATGGGATTACGATTACACAGGTTTTAGTATAGATTCTGATAGTTCAGGAGATAAGAGTAGTAGAGCTGCGTTTGGATCTGATGATGTTCCTTTAGATGAATCTATTCGTAGGAAGATTGTTGAGGTTACGAGTGTGGAAGATGCCTTGTTGTTAAAATCTGGTAAAAAGGTCTCGCCTTTGAGACAAGGTTGGGGAGATTGGTTTGATAAGAAAGGTGATTTCTTGAGGAGAGATAGAATGTTTAAGTCGAATATTGAGACTTTGAATCCGTTGAATAATCCAATGTTGCAGGATCCTGATAGTGTTGGGAATACTGGATTGACTAGAGGTGATAAGGTTGTGCAGAAATGGAGGTTGAATCAGATTAAGAGAAACCCTTTTATGGCAAAGAAGCCATTGAGTGTTGTTTCAGAGAAGAAGGAACCAAATGAGTTTAGGTTGCTGAGTAGTGTTGGTGAGATCAAGAGAGGTGAACGTAAGACATTAGACAATGATGAGAAAATTGAGAGAGAGGAACAGAAGAATGTGGAATCTGAGAGGAAGCATGATGAGGTTACAGAACATATGTATGCAGATGGAACAAAATGGGGATATTATCCTGGTATAGAACCGAGTTTGTCGTTTTCGGATTTTATGGATTCGTTTTTTAGAAAGGAGAAATGTTCTATGAGAGTGTTTATGGTGTGGAATTCACCTGGTTGGATGTTTAGTGTTAGACATCAAAGAGGGCTTGAGAGCTTACTGTCTCAGCATCGAGATGCTTGTGTTGTGGTTTTCTCAGAGACTGTTGAGCTTGATTTCTTCAGGAACAGCTTTGTGAAAGATAGTTATAAAGTTGCTGTGGCAATGCCCAACCTTGATGAGTTGCTGCAGGATACTCCTACTCATGTATTTGCTTCTGTATGGTTTGATTGGAGAAAAACTAAGTTCTATCCTACTCACTACAGTGAACTCGTTCGGCTTGCCGCCCTTTATAAATATGGCGGGGTTTACCTCGATTCTGATGTGATAGTTTTGGGTTCATTATCGTCTTTGAGAAATACTATTGGCATGGAGGATCAGGTAGCCGGTGAATCACTGAACGGTGCTGTTATGTCATTCGAAAAGAAAAGCCCATTCTTACTTGAATGCTTGAACGAGTACTACTTGACTTACGATGATAAGTGTTTGCGATGCAACGGAGCAGATCTCTTGACCCGAGTAGCTAAACGGTTTTTAAACGGGAAGAATCGGCGTATGAATCAACAGGAGCTGAACATTCGACCGTCCTCTGTTTTCTTCCCAATCAACTCACAACAGATCACAAACTATTTTGCATACCCTGCAATAGAAGATGAGAGATCGCAGCAAGACGAATCGTTCAAGAAGATACTCAATGAGTCCTTAACGTTCCATTTCTGGAACAGCGTAACTTCCTCACTGATCCCTGAACCTGAGAGCCTTGTGGCTAAGTTCCTTGATCATAGTTGTATCAGATGCTCCGATGTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

644

Amino Acids

73.49

Weight (kDa)

5.37

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 385 - 473 2.6e-08 Glycosyltransferase sugar-binding region containing DXD motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 407, 1272, 1416, 1933
AccBSI CCGCTC 1 cut(s) 141
AciI CCGC 4 cut(s) 139, 216, 1407, 1425
AclI AACGTT 1 cut(s) 1829
AclWI GGATC 8 cut(s) 225, 238, 351, 523, 728, 741, 1506, 1858
AcsI RAATTY 1 cut(s) 1129
AcuI CTGAAG 1 cut(s) 1228
AfaI GTAC 1 cut(s) 1583
AfiI CCNNNNNNNGG 1 cut(s) 823
AgsI TTSAA 8 cut(s) 206, 421, 706, 715, 799, 1568, 1576, 1804
AjnI CCWGG 2 cut(s) 1039, 1135
AleI CACNNNNGTG 1 cut(s) 1386
AluBI AGCT 8 cut(s) 44, 416, 506, 1179, 1234, 1254, 1646, 1693
AluI AGCT 8 cut(s) 44, 416, 506, 1179, 1234, 1254, 1646, 1693
Alw21I GWGCWC 2 cut(s) 40, 267
Alw26I GTCTC 8 cut(s) 88, 107, 193, 616, 616, 692, 1191, 1217
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 8 cut(s) 225, 238, 351, 523, 728, 741, 1506, 1858
AlwNI CAGNNNCTG 2 cut(s) 1226, 1693
Ama87I CYCGRG 1 cut(s) 1638
ApaLI GTGCAC 1 cut(s) 36
ApeKI GCWGC 4 cut(s) 362, 506, 1309, 1786
ApoI RAATTY 1 cut(s) 1129
Asp700I GAANNNNTTC 2 cut(s) 543, 1395
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 7 cut(s) 125, 668, 782, 908, 923, 1125, 1523
AsuII TTCGAA 2 cut(s) 296, 1542
AvaI CYCGRG 1 cut(s) 1638
BaeGI GKGCMC 1 cut(s) 40
BamHI GGATCC 2 cut(s) 230, 733
BbsI GAAGAC 3 cut(s) 162, 255, 288
Bbv12I GWGCWC 2 cut(s) 40, 267
BbvI GCAGC 4 cut(s) 349, 493, 1296, 1798
BccI CCATC 1 cut(s) 1010
BceAI ACGGC 4 cut(s) 29, 35, 47, 304
BciT130I CCWGG 2 cut(s) 1041, 1137
BciVI GTATCC 1 cut(s) 1309
BclI TGATCA 1 cut(s) 1900
BcoDI GTCTC 8 cut(s) 88, 107, 193, 616, 616, 692, 1191, 1217
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 3 cut(s) 432, 1310, 1384
BfuI GTATCC 1 cut(s) 1309
BglII AGATCT 1 cut(s) 1627
BisI GCNGC 5 cut(s) 363, 507, 1310, 1407, 1787
BlsI GCNGC 5 cut(s) 364, 508, 1311, 1408, 1788
BmcAI AGTACT 1 cut(s) 1583
Bme1390I CCNGG 2 cut(s) 1041, 1137
BmeT110I CYCGRG 1 cut(s) 1638
BmiI GGNNCC 4 cut(s) 148, 232, 735, 864
BmrFI CCNGG 2 cut(s) 1041, 1137
BmsI GCATC 6 cut(s) 262, 571, 1189, 1201, 1604, 1907
BpiI GAAGAC 3 cut(s) 162, 255, 288
BplI GAGNNNNNCTC 2 cut(s) 1614, 1646
BpmI CTGGAG 1 cut(s) 133
Bpu14I TTCGAA 2 cut(s) 296, 1542
BpuEI CTTGAG 2 cut(s) 685, 1193
BsaBI GATNNNNATC 2 cut(s) 312, 348
BsaI GGTCTC 1 cut(s) 616
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse118I RCCGGY 2 cut(s) 212, 1508
Bse1I ACTGG 1 cut(s) 760
Bse3DI GCAATG 1 cut(s) 1293
Bse8I GATNNNNATC 2 cut(s) 312, 348
BseBI CCWGG 2 cut(s) 1041, 1137
BseGI GGATG 1 cut(s) 1149
BseJI GATNNNNATC 2 cut(s) 312, 348
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMI GCAATG 1 cut(s) 1293
BseMII CTCAG 6 cut(s) 204, 875, 966, 1202, 1233, 1866
BseNI ACTGG 1 cut(s) 760
BseRI GAGGAG 2 cut(s) 234, 682
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 4 cut(s) 349, 493, 1296, 1798
BsgI GTGCAG 1 cut(s) 803
Bsh1285I CGRYCG 2 cut(s) 279, 1706
BsiEI CGRYCG 2 cut(s) 279, 1706
BsiHKAI GWGCWC 2 cut(s) 40, 267
BsiHKCI CYCGRG 1 cut(s) 1638
BsiSI CCGG 2 cut(s) 213, 1509
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 8 cut(s) 88, 107, 193, 616, 616, 692, 1191, 1217
BsmBI CGTCTC 3 cut(s) 88, 107, 193
BsmI GAATGC 1 cut(s) 1574
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 1638
Bsp119I TTCGAA 2 cut(s) 296, 1542
Bsp1286I GDGCHC 2 cut(s) 40, 267
BspACI CCGC 4 cut(s) 139, 216, 1407, 1425
BspCNI CTCAG 6 cut(s) 203, 876, 967, 1201, 1232, 1867
BspLI GGNNCC 4 cut(s) 148, 232, 735, 864
BspMAI CTGCAG 1 cut(s) 1314
BspPI GGATC 8 cut(s) 225, 238, 351, 523, 728, 741, 1506, 1858
BspQI GCTCTTC 1 cut(s) 406
BspT104I TTCGAA 2 cut(s) 296, 1542
BspTNI GGTCTC 1 cut(s) 616
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 1293
BsrFI RCCGGY 2 cut(s) 212, 1508
BsrI ACTGG 1 cut(s) 760
BssAI RCCGGY 2 cut(s) 212, 1508
Bst2UI CCWGG 2 cut(s) 1041, 1137
Bst4CI ACNGT 8 cut(s) 35, 163, 1185, 1228, 1388, 1526, 1653, 1707
Bst6I CTCTTC 3 cut(s) 116, 220, 406
BstAPI GCANNNNNTGC 1 cut(s) 1763
BstBI TTCGAA 2 cut(s) 296, 1542
BstC8I GCNNGC 2 cut(s) 46, 1404
BstDEI CTNAG 8 cut(s) 190, 884, 975, 1188, 1219, 1365, 1875, 1890
BstF5I GGATG 1 cut(s) 1149
BstHHI GCGC 1 cut(s) 50
BstMAI GTCTC 8 cut(s) 88, 107, 193, 616, 616, 692, 1191, 1217
BstMCI CGRYCG 2 cut(s) 279, 1706
BstMWI GCNNNNNNNGC 1 cut(s) 1763
BstNI CCWGG 2 cut(s) 1041, 1137
BstSCI CCNGG 2 cut(s) 1039, 1135
BstSFI CTRYAG 3 cut(s) 432, 1310, 1384
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 4 cut(s) 349, 493, 1296, 1798
BstV2I GAAGAC 3 cut(s) 162, 255, 288
BstX2I RGATCY 5 cut(s) 230, 343, 515, 733, 1627
BstYI RGATCY 5 cut(s) 230, 343, 515, 733, 1627
BsuI GTATCC 1 cut(s) 1309
BtgZI GCGATG 1 cut(s) 1627
BtsCI GGATG 1 cut(s) 1149
BtsIMutI CAGTG 3 cut(s) 1393, 1517, 1859
Cac8I GCNNGC 2 cut(s) 46, 1404
CaiI CAGNNNCTG 2 cut(s) 1226, 1693
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 2 cut(s) 212, 1508
CseI GACGC 1 cut(s) 329
CsiI ACCWGGT 1 cut(s) 1135
Csp6I GTAC 1 cut(s) 1582
CviAII CATG 4 cut(s) 392, 986, 1328, 1492
CviQI GTAC 1 cut(s) 1582
DdeI CTNAG 8 cut(s) 190, 884, 975, 1188, 1219, 1365, 1875, 1890
DraI TTTAAA 1 cut(s) 1659
Eam1104I CTCTTC 3 cut(s) 116, 220, 406
EarI CTCTTC 3 cut(s) 116, 220, 406
EciI GGCGGA 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 1228
Eco88I CYCGRG 1 cut(s) 1638
EcoRI GAATTC 1 cut(s) 1129
EcoRII CCWGG 2 cut(s) 1039, 1135
Esp3I CGTCTC 3 cut(s) 88, 107, 193
FaeI CATG 4 cut(s) 395, 989, 1331, 1495
FalI AAGNNNNNCTT 4 cut(s) 330, 362, 400, 432
FatI CATG 4 cut(s) 391, 985, 1327, 1491
FauI CCCGC 1 cut(s) 1418
FauNDI CATATG 1 cut(s) 1005
FbaI TGATCA 1 cut(s) 1900
Fnu4HI GCNGC 5 cut(s) 363, 507, 1310, 1407, 1787
FokI GGATG 1 cut(s) 1156
Fsp4HI GCNGC 5 cut(s) 363, 507, 1310, 1407, 1787
FspBI CTAG 1 cut(s) 765
GlaI GCGC 1 cut(s) 49
GluI GCNGC 5 cut(s) 363, 507, 1310, 1407, 1787
GsuI CTGGAG 1 cut(s) 133
HapII CCGG 2 cut(s) 213, 1509
HgaI GACGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 50
Hin1II CATG 4 cut(s) 395, 989, 1331, 1495
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 42
HpaII CCGG 2 cut(s) 213, 1509
HphI GGTGA 7 cut(s) 125, 668, 782, 908, 923, 1125, 1523
Hpy166II GTNNAC 5 cut(s) 20, 38, 914, 1391, 1432
Hpy8I GTNNAC 5 cut(s) 20, 38, 914, 1391, 1432
Hpy99I CGWCG 4 cut(s) 203, 263, 272, 290
HpyAV CCTTC 1 cut(s) 853
HpyCH4III ACNGT 8 cut(s) 35, 163, 1185, 1228, 1388, 1526, 1653, 1707
HpyCH4IV ACGT 4 cut(s) 22, 201, 916, 1829
HpyCH4V TGCA 8 cut(s) 38, 730, 784, 1013, 1312, 1617, 1757, 1766
HpyF10VI GCNNNNNNNGC 1 cut(s) 1763
HpyF3I CTNAG 8 cut(s) 190, 884, 975, 1188, 1219, 1365, 1875, 1890
HpySE526I ACGT 4 cut(s) 22, 201, 916, 1829
Hsp92II CATG 4 cut(s) 395, 989, 1331, 1495
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 1900
LguI GCTCTTC 1 cut(s) 406
LmnI GCTCC 4 cut(s) 152, 1622, 1690, 1925
Lsp1109I GCAGC 4 cut(s) 349, 493, 1296, 1798
LweI GCATC 6 cut(s) 262, 571, 1189, 1201, 1604, 1907
MabI ACCWGGT 1 cut(s) 1135
MaeI CTAG 1 cut(s) 765
MaeII ACGT 4 cut(s) 22, 201, 916, 1829
MaeIII GTNAC 5 cut(s) 9, 29, 565, 994, 1849
MbiI CCGCTC 1 cut(s) 141
MflI RGATCY 5 cut(s) 230, 343, 515, 733, 1627
MhlI GDGCHC 2 cut(s) 40, 267
MluCI AATT 2 cut(s) 942, 1129
MlyI GAGTC 1 cut(s) 1829
MmeI TCCRAC 2 cut(s) 222, 1121
MroXI GAANNNNTTC 2 cut(s) 543, 1395
MseI TTAA 7 cut(s) 348, 396, 593, 684, 807, 1658, 1826
MslI CAYNNNNRTG 5 cut(s) 270, 396, 1008, 1197, 1386
MspI CCGG 2 cut(s) 213, 1509
MspR9I CCNGG 2 cut(s) 1041, 1137
Mva1269I GAATGC 1 cut(s) 1574
MvaI CCWGG 2 cut(s) 1041, 1137
MwoI GCNNNNNNNGC 1 cut(s) 1763
NdeI CATATG 1 cut(s) 1005
NlaIII CATG 4 cut(s) 395, 989, 1331, 1495
NlaIV GGNNCC 4 cut(s) 148, 232, 735, 864
NmuCI GTSAC 2 cut(s) 9, 29
NspV TTCGAA 2 cut(s) 296, 1542
OliI CACNNNNGTG 1 cut(s) 1386
PciSI GCTCTTC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 4 cut(s) 19, 264, 267, 276
PctI GAATGC 1 cut(s) 1574
PdmI GAANNNNTTC 2 cut(s) 543, 1395
PkrI GCNGC 5 cut(s) 364, 508, 1311, 1408, 1788
Ple19I CGATCG 1 cut(s) 279
PleI GAGTC 1 cut(s) 1828
PpsI GAGTC 1 cut(s) 1828
PsiI TTATAA 4 cut(s) 407, 1272, 1416, 1933
Psp1406I AACGTT 1 cut(s) 1829
Psp6I CCWGG 2 cut(s) 1039, 1135
PspGI CCWGG 2 cut(s) 1039, 1135
PspN4I GGNNCC 4 cut(s) 148, 232, 735, 864
PsrI GAACNNNNNNTAC 2 cut(s) 1568, 1600
PstI CTGCAG 1 cut(s) 1314
PstNI CAGNNNCTG 2 cut(s) 1226, 1693
PsuI RGATCY 5 cut(s) 230, 343, 515, 733, 1627
PvuI CGATCG 1 cut(s) 279
RsaI GTAC 1 cut(s) 1583
RsaNI GTAC 1 cut(s) 1582
RseI CAYNNNNRTG 5 cut(s) 270, 396, 1008, 1197, 1386
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 7 cut(s) 348, 396, 593, 684, 807, 1658, 1826
SatI GCNGC 5 cut(s) 363, 507, 1310, 1407, 1787
ScaI AGTACT 1 cut(s) 1583
SchI GAGTC 1 cut(s) 1829
ScrFI CCNGG 2 cut(s) 1041, 1137
SduI GDGCHC 2 cut(s) 40, 267
SexAI ACCWGGT 1 cut(s) 1135
SfaNI GCATC 6 cut(s) 262, 571, 1189, 1201, 1604, 1907
SfcI CTRYAG 3 cut(s) 432, 1310, 1384
SfuI TTCGAA 2 cut(s) 296, 1542
SgrAI CRCCGGYG 1 cut(s) 212
SmiMI CAYNNNNRTG 5 cut(s) 270, 396, 1008, 1197, 1386
SmlI CTYRAG 2 cut(s) 664, 1172
SmoI CTYRAG 2 cut(s) 664, 1172
Sse9I AATT 2 cut(s) 942, 1129
SsiI CCGC 4 cut(s) 139, 216, 1407, 1425
SspI AATATT 1 cut(s) 694
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 1039, 1135
TaaI ACNGT 8 cut(s) 35, 163, 1185, 1228, 1388, 1526, 1653, 1707
TaiI ACGT 4 cut(s) 25, 204, 919, 1832
TaqI TCGA 9 cut(s) 258, 279, 296, 387, 689, 1195, 1437, 1542, 1702
TasI AATT 2 cut(s) 942, 1129
TatI WGTACW 1 cut(s) 1581
TauI GCSGC 1 cut(s) 1409
Tru1I TTAA 7 cut(s) 348, 396, 593, 684, 807, 1658, 1826
Tru9I TTAA 7 cut(s) 348, 396, 593, 684, 807, 1658, 1826
TscAI CASTG 3 cut(s) 1393, 1524, 1866
TseFI GTSAC 2 cut(s) 9, 29
TseI GCWGC 4 cut(s) 362, 506, 1309, 1786
Tsp45I GTSAC 2 cut(s) 9, 29
TspDTI ATGAA 5 cut(s) 357, 453, 552, 1452, 1694
TspGWI ACGGA 3 cut(s) 70, 699, 1635
TspRI CASTG 3 cut(s) 1393, 1524, 1866
VneI GTGCAC 1 cut(s) 36
XapI RAATTY 1 cut(s) 1129
XmnI GAANNNNTTC 2 cut(s) 543, 1395
XspI CTAG 1 cut(s) 765
ZrmI AGTACT 1 cut(s) 1583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.