Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009629

Physical Location & Seq

Genomic Coordinates Reverse (-)

2918261 .. 2918704

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAAACCCAAAATGCTGAGAATCATCCGTTCCCGGTGGCCCTACCGCCCCCATTACGGCGTCTACATCTGCACCGTGATCTCCGCCCTCCTGCTCCTCCTCCTCTCCGTCTCTCTCCTCTACACCCGCAGTCAGAAAATTCTCATGGATCCTCTGGGTTTTTCTTCAATCATGTCAGTGGGGTTATCAGAAGAGGCTTGAATAAGCGAAAGATTGAAGATTTGATGAAAGTGGGGTTGTCAGCGGAGGACGCGCTGATGGTGAAGGTAGGGAAGAGGGTTTCGCCGCTAAGGGAGGGATCCAAATGGACTTCTTGGAAGCTAGAGGTCCTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00601 ko00603 ko01100 map00601 map00603 map01100

Pfam Domains

Protein Families

Gb3_synth Gly_transf_sug

Protein Analysis

113

Amino Acids

12.65

Weight (kDa)

10.95

Isoelectric Point (pI)

70.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19900 AT4G19900
fragaria_vesca	FvH4_3g12290 FvH4_3g12290
malus_domestica	MD05G1251700.v1.1 MD10G1232500.v1.1
prunus_persica	Prupe.4G112000_v2.0.a1 Prupe.4G112000_v2.0.a1 Prupe.4G112000_v2.0.a1
pyrus_communis	pycom05g22960 pycom10g19550
rosa_chinensis	RchiOBHm_Chr5g0020101
rosa_laevigata	RLG00000031199 RLG00000032499
rosa_multiflora	Rmu_sc0009586.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058100
rosa_rugosa	Rorug05G0056900
rosa_samantha	Rh5AG146900 Rh5BG146500 Rh5CG158000 Rh5DG145900
rosa_wichuraiana	Rw5G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AccII	CGCG	1 cut(s)	254
AciI	CCGC	5 cut(s)	47, 85, 128, 245, 287
AclWI	GGATC	4 cut(s)	144, 157, 294, 307
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	169, 202, 218
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	4 cut(s)	144, 157, 294, 307
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	40, 328
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	328
BamHI	GGATCC	2 cut(s)	149, 299
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	40, 328
BmiI	GGNNCC	2 cut(s)	151, 301
BmrFI	CCNGG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	5 cut(s)	87, 90, 93, 108, 323
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	79, 149, 299
BspACI	CCGC	5 cut(s)	47, 85, 128, 245, 287
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	151, 301
BspPI	GGATC	4 cut(s)	144, 157, 294, 307
BssMI	GATC	3 cut(s)	79, 149, 299
BssNI	GRCGYC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	187, 269
BstACI	GRCGYC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	18, 290
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	82, 152, 302
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	79, 149, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	33
BstUI	CGCG	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	149, 299
BstYI	RGATCY	2 cut(s)	149, 299
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	184
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	40, 328
CseI	GACGC	2 cut(s)	50, 260
CviAII	CATG	2 cut(s)	146, 173
CviJI	RGCY	3 cut(s)	41, 198, 322
CviKI_1	RGCY	3 cut(s)	41, 198, 322
DdeI	CTNAG	2 cut(s)	18, 290
DpnI	GATC	3 cut(s)	81, 151, 301
DpnII	GATC	3 cut(s)	79, 149, 299
Eam1104I	CTCTTC	2 cut(s)	187, 269
EarI	CTCTTC	2 cut(s)	187, 269
EciI	GGCGGA	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	2 cut(s)	149, 176
FaiI	YATR	2 cut(s)	147, 174
FatI	CATG	2 cut(s)	145, 172
FauI	CCCGC	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	2 cut(s)	50, 260
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	149, 176
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	3 cut(s)	136, 191, 338
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	2 cut(s)	18, 290
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	149, 176
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	79, 149, 299
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	48, 105, 141
MaeI	CTAG	1 cut(s)	323
MalI	GATC	3 cut(s)	81, 151, 301
MboI	GATC	3 cut(s)	79, 149, 299
MboII	GAAGA	4 cut(s)	157, 204, 230, 286
MflI	RGATCY	2 cut(s)	149, 299
MluCI	AATT	1 cut(s)	139
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	3 cut(s)	79, 149, 299
NlaIII	CATG	2 cut(s)	149, 176
NlaIV	GGNNCC	2 cut(s)	151, 301
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	151, 301
PspPI	GGNCC	2 cut(s)	40, 328
PspPPI	RGGWCCY	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	149, 299
RseI	CAYNNNNRTG	1 cut(s)	177
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	3 cut(s)	79, 149, 299
Sau96I	GGNCC	2 cut(s)	40, 328
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	3 cut(s)	270, 324, 330
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	5 cut(s)	47, 85, 128, 245, 287
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	1 cut(s)	139
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	17, 242
TspGWI	ACGGA	2 cut(s)	18, 98
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.