FvH4_3g12290

At4g19900-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
7267439 .. 7273272
5834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12290.t1

Sequence Viewer

Length: 1950 bp
ATGCTGAGAAGCATCCGTTCGCGGCGGCCCCACCGCCCCCGTTACGGCGTCTACATCTGCGCCGTGATCTCCGCCCTCCTCCTCCTCCTCTCCGTCTCTCTCCTCTACACCCGCCTCTCCCACTCCCAGTCCCACCACCTCAACTACCGCTACCCGACCCCCTTAAACGACGACGTTTCCCTCTCCAACCCCCTCATCTCCGACGACGCCGCCGCCACCGTCACCGCCGACGACAAGATCGACGTGCTCGACGAGGTCGTCGCCGACGACGCCCCCAGAGACGACGAAGTCGAGGACGACGACGATCCGCAGCCGGGGCAGGGCGGAGGATCGTCGGCCGGGTTTTTCTTCGATCACGTCGCCGGCGTTATCAGGCGGGGCTTGAACAAGAGGAAGATCGAGGATTGGGATGAGGATTATAGTGGATTTAGCGTGGGATTGAGTGTGGTGGATAAGAGCGTGGTGGCGTTTGGATCGGACGACGTGCCGGTGGATATGGAGGTGCGGCGGAGGATGACGGAGGTGGCGGGTGTGGAGGACGCGCTGATGGTGAAGGTGGGGAAGAGAGGTTCGCCGCTGAGGGAGGGATGGGGGGAGTGGTTTGATAAGAAGAGTGATTTTCTGAGGAGGGATAAGATGTTCAAGTCCAATTTGGAGCTGTTAAACCCTCTGCATAACCCAATGCTGCAAGACCCCGATGGCGTCGGGGTTTCGGGGCTGACTAGGGGGGACAAGGCTGTGCAGAAATGGTGGCTGAGTCATTTTAAGAAGGTGCCGTTTCGGAGTAGGAAGAAGGAGAATGCGAGTGGGAGTGGAGGCGTGGGAGTGGAGGTGAGTGAGGTGGAGAGAGCGGAGAGGAAGGCTTTGGATGAGAGTGGAGGAGGTAAGGTGTTGAATCCCGGTGGGAGTGGGAATTCTAGTAGTGATGGGAATTCGTCGAGTGTTGGTAATATGAGTGAGGTAGCAGTTGGGGGAACTGTTGGACAGATTAGTGAGTCGGTTCAGAATGAGTTTTCAGGTCTTGTTTATGCGGACGGCAAGAGATGGGGTTTCTATCCTGGTTTGCATCCACATTTGTCGTTTCCGGATTTTATGGAGGAGTTTTTTAGCAAGGGGTGTGAATTGAGGGTGTTTATGGTGTGGAATTCTCCGGCTTGGATGTTTAGTGTGAGGCACCAGCGGGGGCTTGAGAGTTTACTCTCCCATCATCGACGTGCCTGTGTTGTAGTGTTTTCTGAGACAATTGAGCTTGATTTCTTTAAGAATAGCTTTGTAAAAGACGGGTACAAAGTTGCTGTTGCTATGCCAAATCTTGATGAGTTACTAAAGGGTACACCAACTCATATATTTGCTTCTGCCTGGTTTGAATGGAGAAAGACGAAGCATTATGCTACTCATTACAGTGAGCTTGTCCGCCTTGCTGCTCTTTACAAATATGGTGGAATATATCTTGATTCTGATATTATAGTCCTGAAATCACTATCTTCACTCAGCAATTGTGTTGGTAAAGAGGATAGAGTAGCGGGAGGTTCTCTGAATGGTGCTGTAATGGCATTTAAAAAGAACAGCCTCTTTATGATGGAGTGCTTGAAGGAGTTTTACATGACATATGATGATACTCGTTTAAGATGGAATGGGGCTGATCTTTTGACAAGAGTTGCACGGAGGTTTATGAGTATTCGTAATAAATCTGTTAGACAGATGGAGCTGAACATGCTGCCATCTTTTATGTTTTTCCCAATTGCTCATCAGAATATCTCAAGATATTTCACTGCACCTACAACTGAGACTGAAAAAGCTCAACAAGATATTCTGTTTAGAAAGATTCTGAATGAGTCCTTGACATTCCATTTTTGGAATAGTTTTACATCTTCTCTGATTCCAGAGACAGAGAGCCTTGCAACTAGGCTTATTGATCACCCTTGTATCCGATGCTCTGATGTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

650

Amino Acids

72.88

Weight (kDa)

6.34

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 390 - 499 4.7e-19 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 518 - 648 4.9e-24 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 257, 287
AccB1I GGYRCC 2 cut(s) 772, 1173
AccBSI CCGCTC 1 cut(s) 851
AccI GTMKAC 1 cut(s) 51
AccII CGCG 2 cut(s) 22, 542
AccIII TCCGGA 1 cut(s) 1084
AclWI GGATC 3 cut(s) 299, 337, 481
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 3 cut(s) 913, 931, 1144
AcyI GRCGYC 4 cut(s) 48, 207, 270, 702
AfaI GTAC 2 cut(s) 1286, 1333
AfiI CCNNNNNNNGG 3 cut(s) 44, 314, 320
AgsI TTSAA 5 cut(s) 385, 643, 895, 1367, 1591
AjiI CACGTC 4 cut(s) 244, 358, 484, 1214
AjnI CCWGG 2 cut(s) 1057, 1358
AloI GAACNNNNNNTCC 4 cut(s) 553, 585, 623, 655
AluBI AGCT 6 cut(s) 658, 1249, 1269, 1408, 1708, 1799
AluI AGCT 6 cut(s) 658, 1249, 1269, 1408, 1708, 1799
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 5 cut(s) 100, 273, 1232, 1781, 1880
AlwI GGATC 3 cut(s) 299, 337, 481
Aor13HI TCCGGA 1 cut(s) 1084
AoxI GGCC 2 cut(s) 26, 336
ApeKI GCWGC 4 cut(s) 310, 685, 1421, 1717
ApoI RAATTY 3 cut(s) 913, 931, 1144
AspLEI GCGC 2 cut(s) 62, 544
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 3 cut(s) 315, 340, 900
AsuHPI GGTGA 4 cut(s) 214, 562, 844, 1910
BaeI ACNNNNGTAYC 2 cut(s) 1909, 1942
BanI GGYRCC 2 cut(s) 772, 1173
BarI GAAGNNNNNNTAC 2 cut(s) 1583, 1615
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 578
BbvI GCAGC 4 cut(s) 322, 672, 1408, 1704
BceAI ACGGC 4 cut(s) 47, 61, 760, 1051
BciT130I CCWGG 2 cut(s) 1059, 1360
BciVI GTATCC 1 cut(s) 1937
BclI TGATCA 1 cut(s) 1915
BcnI CCSGG 3 cut(s) 315, 340, 900
BcoDI GTCTC 5 cut(s) 100, 273, 1232, 1781, 1880
BfaI CTAG 3 cut(s) 723, 918, 1905
BfuI GTATCC 1 cut(s) 1937
Bme1390I CCNGG 5 cut(s) 315, 340, 900, 1059, 1360
BmgBI CACGTC 4 cut(s) 244, 358, 484, 1214
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 3 cut(s) 29, 774, 1175
BmrFI CCNGG 5 cut(s) 315, 340, 900, 1059, 1360
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 3 cut(s) 21, 1075, 1922
BmuI ACTGGG 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 1208, 1744
BpuMI CCSGG 3 cut(s) 315, 340, 900
BsaHI GRCGYC 4 cut(s) 48, 207, 270, 702
BsaJI CCNNGG 1 cut(s) 314
BsaWI WCCGGW 1 cut(s) 1084
BsaXI ACNNNNNCTCC 4 cut(s) 816, 846, 873, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 314, 320
Bse118I RCCGGY 2 cut(s) 362, 487
Bse1I ACTGG 1 cut(s) 127
BseAI TCCGGA 1 cut(s) 1084
BseBI CCWGG 2 cut(s) 1059, 1360
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 7 cut(s) 12, 415, 519, 593, 874, 1066, 1164
BseLI CCNNNNNNNGG 3 cut(s) 44, 314, 320
BseMII CTCAG 6 cut(s) 569, 614, 746, 1227, 1504, 1776
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 8 cut(s) 68, 71, 74, 77, 92, 640, 894, 1112
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 4 cut(s) 322, 672, 1408, 1704
BsgI GTGCAG 2 cut(s) 761, 1758
Bsh1236I CGCG 2 cut(s) 22, 542
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 28, 338
BshNI GGYRCC 2 cut(s) 772, 1173
BsiEI CGRYCG 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 7 cut(s) 314, 339, 363, 488, 900, 1085, 1151
BslFI GGGAC 2 cut(s) 115, 743
BslI CCNNNNNNNGG 3 cut(s) 44, 314, 320
BsmAI GTCTC 5 cut(s) 100, 273, 1232, 1781, 1880
BsmBI CGTCTC 2 cut(s) 100, 273
BsmFI GGGAC 2 cut(s) 115, 743
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 2 cut(s) 28, 338
Bsp1286I GDGCHC 1 cut(s) 249
Bsp13I TCCGGA 1 cut(s) 1084
Bsp143I GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
BspANI GGCC 2 cut(s) 28, 338
BspCNI CTCAG 6 cut(s) 570, 615, 747, 1228, 1503, 1777
BspEI TCCGGA 1 cut(s) 1084
BspFNI CGCG 2 cut(s) 22, 542
BspLI GGNNCC 3 cut(s) 29, 774, 1175
BspPI GGATC 3 cut(s) 299, 337, 481
BspT107I GGYRCC 2 cut(s) 772, 1173
BsrBI CCGCTC 1 cut(s) 851
BsrFI RCCGGY 2 cut(s) 362, 487
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 2 cut(s) 362, 487
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
BssNI GRCGYC 4 cut(s) 48, 207, 270, 702
Bst2UI CCWGG 2 cut(s) 1059, 1360
Bst4CI ACNGT 3 cut(s) 220, 979, 1403
Bst6I CTCTTC 2 cut(s) 557, 605
BstACI GRCGYC 4 cut(s) 48, 207, 270, 702
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 7 cut(s) 5, 578, 623, 755, 1236, 1490, 1785
BstF5I GGATG 7 cut(s) 12, 415, 519, 593, 874, 1066, 1164
BstFNI CGCG 2 cut(s) 22, 542
BstHHI GCGC 2 cut(s) 62, 544
BstKTI GATC 9 cut(s) 69, 240, 307, 332, 355, 399, 476, 1645, 1918
BstMAI GTCTC 5 cut(s) 100, 273, 1232, 1781, 1880
BstMBI GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
BstMCI CGRYCG 1 cut(s) 339
BstMWI GCNNNNNNNGC 4 cut(s) 269, 316, 1550, 1714
BstNI CCWGG 2 cut(s) 1059, 1360
BstNSI RCATGY 1 cut(s) 1717
BstSCI CCNGG 5 cut(s) 313, 338, 898, 1057, 1358
BstUI CGCG 2 cut(s) 22, 542
BstV1I GCAGC 4 cut(s) 322, 672, 1408, 1704
BstZI CGGCCG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 1937
BsuRI GGCC 2 cut(s) 28, 338
BtrI CACGTC 4 cut(s) 244, 358, 484, 1214
BtsCI GGATG 7 cut(s) 12, 415, 519, 593, 874, 1066, 1164
BtsI GCAGTG 1 cut(s) 1770
BtsIMutI CAGTG 2 cut(s) 1408, 1770
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 2 cut(s) 62, 544
Cfr10I RCCGGY 2 cut(s) 362, 487
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 5 cut(s) 37, 215, 278, 548, 691
Csp6I GTAC 2 cut(s) 1285, 1332
CspCI CAANNNNNGTGG 2 cut(s) 1420, 1455
CviAII CATG 2 cut(s) 1603, 1714
CviQI GTAC 2 cut(s) 1285, 1332
DdeI CTNAG 7 cut(s) 5, 578, 623, 755, 1236, 1490, 1785
DpnI GATC 9 cut(s) 68, 239, 306, 331, 354, 398, 475, 1644, 1917
DpnII GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
DraI TTTAAA 1 cut(s) 1558
DrdI GACNNNNNNGTC 2 cut(s) 257, 287
DseDI GACNNNNNNGTC 2 cut(s) 257, 287
EaeI YGGCCR 1 cut(s) 336
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 557, 605
EarI CTCTTC 2 cut(s) 557, 605
EciI GGCGGA 4 cut(s) 61, 339, 523, 1403
EclXI CGGCCG 1 cut(s) 336
Eco52I CGGCCG 1 cut(s) 336
EcoRI GAATTC 3 cut(s) 913, 931, 1144
EcoRII CCWGG 2 cut(s) 1057, 1358
Esp3I CGTCTC 2 cut(s) 100, 273
FaeI CATG 2 cut(s) 1606, 1717
FalI AAGNNNNNCTT 2 cut(s) 1253, 1285
FaqI GGGAC 2 cut(s) 115, 743
FatI CATG 2 cut(s) 1602, 1713
FauI CCCGC 5 cut(s) 119, 369, 520, 1173, 1516
FauNDI CATATG 1 cut(s) 1609
FbaI TGATCA 1 cut(s) 1915
FblI GTMKAC 1 cut(s) 51
FokI GGATG 6 cut(s) 422, 526, 600, 881, 1053, 1171
FspBI CTAG 3 cut(s) 723, 918, 1905
GlaI GCGC 2 cut(s) 61, 543
HaeIII GGCC 2 cut(s) 28, 338
HapII CCGG 7 cut(s) 314, 339, 363, 488, 900, 1085, 1151
HgaI GACGC 5 cut(s) 37, 215, 278, 548, 691
HhaI GCGC 2 cut(s) 62, 544
Hin1I GRCGYC 4 cut(s) 48, 207, 270, 702
Hin1II CATG 2 cut(s) 1606, 1717
Hin6I GCGC 2 cut(s) 60, 542
HinP1I GCGC 2 cut(s) 60, 542
HinfI GANTC 7 cut(s) 757, 895, 995, 1454, 1825, 1835, 1879
HpaII CCGG 7 cut(s) 314, 339, 363, 488, 900, 1085, 1151
HphI GGTGA 4 cut(s) 214, 562, 844, 1910
Hpy166II GTNNAC 3 cut(s) 52, 1196, 1334
Hpy188III TCNNGA 6 cut(s) 1085, 1313, 1451, 1471, 1761, 1883
Hpy8I GTNNAC 3 cut(s) 52, 1196, 1334
HpyAV CCTTC 5 cut(s) 547, 763, 787, 853, 1585
HpyCH4III ACNGT 3 cut(s) 220, 979, 1403
HpyCH4IV ACGT 5 cut(s) 174, 243, 357, 483, 1213
HpyCH4V TGCA 7 cut(s) 673, 688, 742, 1066, 1661, 1775, 1901
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 316, 1550, 1714
HpyF3I CTNAG 7 cut(s) 5, 578, 623, 755, 1236, 1490, 1785
HpySE526I ACGT 5 cut(s) 174, 243, 357, 483, 1213
Hsp92I GRCGYC 4 cut(s) 48, 207, 270, 702
Hsp92II CATG 2 cut(s) 1606, 1717
HspAI GCGC 2 cut(s) 60, 542
Kpn2I TCCGGA 1 cut(s) 1084
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 1915
Kzo9I GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
LmnI GCTCC 2 cut(s) 655, 1705
Lsp1109I GCAGC 4 cut(s) 322, 672, 1408, 1704
LweI GCATC 3 cut(s) 21, 1075, 1922
MaeI CTAG 3 cut(s) 723, 918, 1905
MaeII ACGT 5 cut(s) 174, 243, 357, 483, 1213
MaeIII GTNAC 3 cut(s) 41, 220, 1320
MalI GATC 9 cut(s) 68, 239, 306, 331, 354, 398, 475, 1644, 1917
MbiI CCGCTC 1 cut(s) 851
MboI GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
MboII GAAGA 7 cut(s) 340, 406, 574, 622, 802, 1476, 1863
MfeI CAATTG 3 cut(s) 1242, 1495, 1740
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 8 cut(s) 649, 913, 931, 1121, 1144, 1242, 1495, 1740
MlyI GAGTC 3 cut(s) 766, 1004, 1844
MmeI TCCRAC 3 cut(s) 210, 225, 961
MreI CGCCGGCG 1 cut(s) 362
MroI TCCGGA 1 cut(s) 1084
MroNI GCCGGC 1 cut(s) 362
MseI TTAA 6 cut(s) 164, 662, 765, 1260, 1557, 1625
MslI CAYNNNNRTG 2 cut(s) 1212, 1401
MspA1I CMGCKG 2 cut(s) 577, 1180
MspI CCGG 7 cut(s) 314, 339, 363, 488, 900, 1085, 1151
MspR9I CCNGG 5 cut(s) 315, 340, 900, 1059, 1360
MunI CAATTG 3 cut(s) 1242, 1495, 1740
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 2 cut(s) 1059, 1360
MvnI CGCG 2 cut(s) 22, 542
MwoI GCNNNNNNNGC 4 cut(s) 269, 316, 1550, 1714
NaeI GCCGGC 1 cut(s) 364
NciI CCSGG 3 cut(s) 315, 340, 900
NdeI CATATG 1 cut(s) 1609
NdeII GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 2 cut(s) 1606, 1717
NlaIV GGNNCC 3 cut(s) 29, 774, 1175
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 1717
PcsI WCGNNNNNNNCGW 8 cut(s) 237, 246, 249, 255, 264, 288, 297, 363
PctI GAATGC 1 cut(s) 805
PdiI GCCGGC 1 cut(s) 364
PfeI GAWTC 4 cut(s) 895, 1454, 1825, 1879
PflFI GACNNNGTC 2 cut(s) 254, 287
PleI GAGTC 3 cut(s) 765, 1003, 1843
PpsI GAGTC 3 cut(s) 765, 1003, 1843
Psp6I CCWGG 2 cut(s) 1057, 1358
PspGI CCWGG 2 cut(s) 1057, 1358
PspN4I GGNNCC 3 cut(s) 29, 774, 1175
PspPI GGNCC 1 cut(s) 27
PsyI GACNNNGTC 2 cut(s) 254, 287
RsaI GTAC 2 cut(s) 1286, 1333
RsaNI GTAC 2 cut(s) 1285, 1332
RseI CAYNNNNRTG 2 cut(s) 1212, 1401
SaqAI TTAA 6 cut(s) 164, 662, 765, 1260, 1557, 1625
Sau3AI GATC 9 cut(s) 66, 237, 304, 329, 352, 396, 473, 1642, 1915
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 3 cut(s) 766, 1004, 1844
ScrFI CCNGG 5 cut(s) 315, 340, 900, 1059, 1360
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 3 cut(s) 21, 1075, 1922
SgrAI CRCCGGYG 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 1212, 1401
SmlI CTYRAG 2 cut(s) 1187, 1759
SmoI CTYRAG 2 cut(s) 1187, 1759
Sse9I AATT 8 cut(s) 649, 913, 931, 1121, 1144, 1242, 1495, 1740
SspMI CTAG 3 cut(s) 723, 918, 1905
StyD4I CCNGG 5 cut(s) 313, 338, 898, 1057, 1358
TaaI ACNGT 3 cut(s) 220, 979, 1403
TaiI ACGT 5 cut(s) 177, 246, 360, 486, 1216
TaqI TCGA 7 cut(s) 240, 249, 291, 351, 399, 938, 1210
TasI AATT 8 cut(s) 649, 913, 931, 1121, 1144, 1242, 1495, 1740
TauI GCSGC 6 cut(s) 25, 28, 212, 215, 508, 577
TfiI GAWTC 4 cut(s) 895, 1454, 1825, 1879
Tru1I TTAA 6 cut(s) 164, 662, 765, 1260, 1557, 1625
Tru9I TTAA 6 cut(s) 164, 662, 765, 1260, 1557, 1625
TscAI CASTG 2 cut(s) 1408, 1777
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 4 cut(s) 310, 685, 1421, 1717
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 4 cut(s) 5, 82, 533, 1678
TspRI CASTG 2 cut(s) 1408, 1777
Tth111I GACNNNGTC 2 cut(s) 254, 287
XapI RAATTY 3 cut(s) 913, 931, 1144
XceI RCATGY 1 cut(s) 1717
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 3 cut(s) 723, 918, 1905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.