RLG00000032499

At4g19900-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
15868161 .. 15872625
4465 bp
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UTR
Exon/CDS
Intron
RLM00000032499

Sequence Viewer

Length: 2019 bp
ATGCTGAGAAGCATCCGTTCGCGGCGGCCCCACCGCCCCCGTTACGGCGTGTACATCTGCGCCGTGATCTCCGCCCTCCTCCTCCTCATCTCCGTCTCTCTCCTCTACACCCGCCTCTCCCACTCCCAGTCCCACCACTTCAACTACCACCACCCTTCCCCCATCTCCCAAAACGACGACGTTTCCCTCTCCAACTCCCTCATCTCCGACGATGCCACCGCCGCCGTCACCACCATCGCCGCCGACGACAAGATAGACGAGCTGGACGAGGTCGTCGTCGACGACGCCCCCAGAGACGACGAATTGGACGACGAAGACGATCCCCAGTCGGAAAATTCTCAGGGATCCTCCGGGTTTTTCTTCGATCATGTCAGCGGGGTTATCAGAAGAGGCTTGAATAAGCGAAAGATTGAAGATTGGGACGAAGATTACAGTGGGTTTAGTGTAGGGGTGGGCGCGGTGGATAAAAGCATCGTGGCGTTTGGGTCAGACGACGTGCCGGTGGATATGGAGGTGAGGAGGAGGATGACTGAGGTGGCGGGTGTGGAGGACGCGCTGATGGTGAAGGTGGGGAAGAGGGTTTCGCCGCTGAGGGAGGGGTGGGGGGAGTGGTTTGATAAGAAGAGTGATTTTCTGAGGAGGGATAAGATGTTCAAGTCCAATTTGGAGCTGTTGAACCCTCTGCATAACCCAATGCTGCAAGACCCCGATGCCGTTGGGGTTTCCGGGTTAACTAGGGGAGACAAGGCTGTGCAGAAATGGTGGCTGAGTCACTTTAAGAAGGTGCCGTTTCGGAGGAGGAAGGAGAGTGGTGGTGGTGAGAGTAGGAAGGAGAGTGGCGGCGGAGATGGTGTTGTGGATGAGAGGAAGAAAAGTGCGGGGGTGGAGTTGAGTGAGGTTGAGAGAGCGGAGAGGAAGACATTGGATGAGAATGGAGGTAAAGTTTTGATTCCCGGTGGGAGTGGGAATGCTAGTGGTGATAGGAATTCATCGACTGTTGGTAATGTGAGTGAGGTAGCAGTTGGGAGAACTGTTGAACAGATTAGTGAATCGGTTAAGGTGGGTGGAATTAAGAATGAGTTTTCGGGTCTTATTTATGCAGATGGCAAGAGATGGGGTTTCTATCCCGATCTGGATCCCTATTTGTCGTTTACGGATTTTATGGATGCGTTTTTTAGCAAGGGGTGTGATTTGAGGGTGTTTATGGTGTGGAATTCTCCAGCTTGGATGTTTAGTGTTCGGCACCAGCGGGGGCTTGAGAGTTTACTCTCCCATCATCGACATGCCTGTGTTGTGGTGTTGTCTGAGACAATTGAGCTTGATTTCTTTAGAAATAGCTTTGTAAAAGACGGTTACAAAGTTGCTGTTGCTATGCCAAATCTTGATGAGATACTAAAGGGTACACCAACTCATATATTTGCTTCTGCATGGTTCGAATGGAGAAAAACAAAGCATTATGCTACTCATTACAGTGAGCTTATCCGCCTTGCTGCTCTTTACAAATACGGCGGAATATATCTTGATTCTGATATCATAGTTCTGAAATCACTATCTTCACTCAGCAATTGTGTTGGTAAAGAGGATAGACTGGCAGGAGGTTCTTTGAATGGTGCTGTAATGGCATTTAAAAGGAAAAGCCTCTTTATGATGGAGTGCTTGAAAGAGTTTTATATGACATATGATGATACTCGTTTAAGATGGAATGGAGCTGATCTTTTGACGAGAGTTGCACGGAGGTTTTTGACTATTCGTAATAAATCCGTTAGACAGATGGAGCTGAACATGCTACCTTCTTTCACGTTTTTCCCAATTGCTCCTCAGAATATCTCAAGATATTTCACTGCTCCTACAACTGAGACTGAAAAAGCTCAACAAGATGTTCTGTTCAGAAAAATTCTGAATGAGTCCTTCACATTCCATTTTTGGAATAGCTTTACATCTTCTCTGATTCCAGAGCCAGAGAGCCTTGCTACCAGGCTTATTGACCACCACTGTATCCGATGTTCTGATGTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

673

Amino Acids

75.85

Weight (kDa)

6.29

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 413 - 522 4.4e-19 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 541 - 671 5.9e-25 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 784, 1242
AccBSI CCGCTC 1 cut(s) 908
AccI GTMKAC 1 cut(s) 279
AccII CGCG 3 cut(s) 22, 458, 554
AclWI GGATC 5 cut(s) 314, 339, 352, 1130, 1143
AcsI RAATTY 4 cut(s) 334, 985, 1213, 1893
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 2 cut(s) 53, 1402
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 8 cut(s) 142, 397, 413, 655, 676, 1037, 1606, 1660
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 1 cut(s) 1973
AloI GAACNNNNNNTCC 2 cut(s) 635, 667
Alw26I GTCTC 5 cut(s) 100, 288, 735, 1301, 1850
AlwI GGATC 5 cut(s) 314, 339, 352, 1130, 1143
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 2 cut(s) 697, 1490
ApoI RAATTY 4 cut(s) 334, 985, 1213, 1893
AspLEI GCGC 3 cut(s) 62, 458, 556
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 3 cut(s) 352, 727, 954
AsuHPI GGTGA 5 cut(s) 220, 526, 574, 830, 989
AsuII TTCGAA 1 cut(s) 1434
BaeI ACNNNNGTAYC 2 cut(s) 1978, 2011
BamHI GGATCC 2 cut(s) 344, 1135
BanI GGYRCC 2 cut(s) 784, 1242
BbsI GAAGAC 2 cut(s) 321, 923
BbvCI CCTCAGC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 684, 1477
BceAI ACGGC 6 cut(s) 47, 61, 209, 698, 772, 1522
BciT130I CCWGG 1 cut(s) 1975
BciVI GTATCC 1 cut(s) 2006
BcnI CCSGG 3 cut(s) 352, 727, 954
BcoDI GTCTC 5 cut(s) 100, 288, 735, 1301, 1850
BfaI CTAG 2 cut(s) 735, 972
BfuI GTATCC 1 cut(s) 2006
BisI GCNGC 8 cut(s) 23, 26, 222, 240, 587, 698, 841, 1491
BlsI GCNGC 8 cut(s) 24, 27, 223, 241, 588, 699, 842, 1492
Bme1390I CCNGG 4 cut(s) 352, 727, 954, 1975
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 5 cut(s) 29, 346, 786, 1137, 1244
BmrFI CCNGG 4 cut(s) 352, 727, 954, 1975
BmrI ACTGGG 2 cut(s) 121, 319
BmsI GCATC 5 cut(s) 21, 202, 480, 700, 1156
BmuI ACTGGG 2 cut(s) 121, 319
BpiI GAAGAC 2 cut(s) 321, 923
BpmI CTGGAG 1 cut(s) 1203
Bpu10I CCTNAGC 1 cut(s) 590
Bpu14I TTCGAA 1 cut(s) 1434
BpuEI CTTGAG 2 cut(s) 1277, 1813
BpuMI CCSGG 3 cut(s) 352, 727, 954
BsaBI GATNNNNATC 1 cut(s) 1134
BsaHI GRCGYC 1 cut(s) 285
BsaXI ACNNNNNCTCC 4 cut(s) 837, 867, 927, 957
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 499
Bse1I ACTGG 3 cut(s) 127, 325, 1593
Bse8I GATNNNNATC 1 cut(s) 1134
BseBI CCWGG 1 cut(s) 1975
BseGI GGATG 6 cut(s) 12, 531, 865, 931, 1171, 1233
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 9 cut(s) 353, 522, 581, 626, 758, 1296, 1573, 1832, 1845
BseNI ACTGG 3 cut(s) 127, 325, 1593
BseRI GAGGAG 9 cut(s) 68, 71, 74, 92, 532, 535, 652, 811, 1806
BseXI GCAGC 2 cut(s) 684, 1477
BsgI GTGCAG 1 cut(s) 773
Bsh1236I CGCG 3 cut(s) 22, 458, 554
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 2 cut(s) 784, 1242
BsiSI CCGG 4 cut(s) 351, 500, 726, 954
BslFI GGGAC 2 cut(s) 115, 434
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 5 cut(s) 100, 288, 735, 1301, 1850
BsmBI CGTCTC 2 cut(s) 100, 288
BsmFI GGGAC 2 cut(s) 115, 434
BsmI GAATGC 1 cut(s) 973
BsnI GGCC 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 1434
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 9 cut(s) 352, 523, 582, 627, 759, 1297, 1572, 1831, 1846
BspFNI CGCG 3 cut(s) 22, 458, 554
BspLI GGNNCC 5 cut(s) 29, 346, 786, 1137, 1244
BspPI GGATC 5 cut(s) 314, 339, 352, 1130, 1143
BspT104I TTCGAA 1 cut(s) 1434
BspT107I GGYRCC 2 cut(s) 784, 1242
BsrBI CCGCTC 1 cut(s) 908
BsrFI RCCGGY 1 cut(s) 499
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 3 cut(s) 127, 325, 1593
BssAI RCCGGY 1 cut(s) 499
BssMI GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
BssNI GRCGYC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 1975
Bst4CI ACNGT 6 cut(s) 434, 997, 1033, 1352, 1472, 1994
Bst6I CTCTTC 3 cut(s) 382, 569, 617
BstACI GRCGYC 1 cut(s) 285
BstAUI TGTACA 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 1434
BstF5I GGATG 6 cut(s) 12, 531, 865, 931, 1171, 1233
BstFNI CGCG 3 cut(s) 22, 458, 554
BstHHI GCGC 3 cut(s) 62, 458, 556
BstKTI GATC 7 cut(s) 69, 322, 347, 367, 1132, 1138, 1714
BstMAI GTCTC 5 cut(s) 100, 288, 735, 1301, 1850
BstMBI GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
BstMWI GCNNNNNNNGC 3 cut(s) 221, 1619, 1783
BstNI CCWGG 1 cut(s) 1975
BstNSI RCATGY 2 cut(s) 1286, 1786
BstSCI CCNGG 4 cut(s) 350, 725, 952, 1973
BstUI CGCG 3 cut(s) 22, 458, 554
BstV1I GCAGC 2 cut(s) 684, 1477
BstV2I GAAGAC 2 cut(s) 321, 923
BstX2I RGATCY 2 cut(s) 344, 1135
BstYI RGATCY 2 cut(s) 344, 1135
BsuI GTATCC 1 cut(s) 2006
BsuRI GGCC 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 220
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 6 cut(s) 12, 531, 865, 931, 1171, 1233
BtsI GCAGTG 1 cut(s) 1839
BtsIMutI CAGTG 4 cut(s) 439, 1477, 1839, 1990
CfoI GCGC 3 cut(s) 62, 458, 556
Cfr10I RCCGGY 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 2 cut(s) 293, 560
Csp6I GTAC 2 cut(s) 52, 1401
CviAII CATG 4 cut(s) 368, 1283, 1428, 1783
CviQI GTAC 2 cut(s) 52, 1401
DpnI GATC 7 cut(s) 68, 321, 346, 366, 1131, 1137, 1713
DpnII GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
DraI TTTAAA 1 cut(s) 1627
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 3 cut(s) 382, 569, 617
EarI CTCTTC 3 cut(s) 382, 569, 617
EciI GGCGGA 4 cut(s) 61, 858, 1472, 1524
Eco32I GATATC 1 cut(s) 1531
EcoRI GAATTC 2 cut(s) 985, 1213
EcoRII CCWGG 1 cut(s) 1973
EcoRV GATATC 1 cut(s) 1531
Esp3I CGTCTC 2 cut(s) 100, 288
FaeI CATG 4 cut(s) 371, 1286, 1431, 1786
FaqI GGGAC 2 cut(s) 115, 434
FatI CATG 4 cut(s) 367, 1282, 1427, 1782
FauI CCCGC 5 cut(s) 119, 368, 532, 871, 1242
FauNDI CATATG 1 cut(s) 1678
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 8 cut(s) 23, 26, 222, 240, 587, 698, 841, 1491
FokI GGATG 5 cut(s) 538, 872, 938, 1178, 1240
Fsp4HI GCNGC 8 cut(s) 23, 26, 222, 240, 587, 698, 841, 1491
FspBI CTAG 2 cut(s) 735, 972
GlaI GCGC 3 cut(s) 61, 457, 555
GluI GCNGC 8 cut(s) 23, 26, 222, 240, 587, 698, 841, 1491
GsuI CTGGAG 1 cut(s) 1203
HaeIII GGCC 1 cut(s) 28
HapII CCGG 4 cut(s) 351, 500, 726, 954
HgaI GACGC 2 cut(s) 293, 560
HhaI GCGC 3 cut(s) 62, 458, 556
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 4 cut(s) 371, 1286, 1431, 1786
Hin6I GCGC 3 cut(s) 60, 456, 554
HinP1I GCGC 3 cut(s) 60, 456, 554
HincII GTYRAC 2 cut(s) 280, 732
HindII GTYRAC 2 cut(s) 280, 732
HinfI GANTC 6 cut(s) 769, 949, 1049, 1523, 1904, 1948
HpaI GTTAAC 1 cut(s) 732
HpaII CCGG 4 cut(s) 351, 500, 726, 954
HphI GGTGA 5 cut(s) 220, 526, 574, 830, 989
Hpy166II GTNNAC 6 cut(s) 52, 280, 732, 1152, 1265, 1403
Hpy188III TCNNGA 6 cut(s) 1127, 1133, 1382, 1520, 1830, 1952
Hpy8I GTNNAC 6 cut(s) 52, 280, 732, 1152, 1265, 1403
HpyAV CCTTC 7 cut(s) 165, 559, 775, 796, 823, 1800, 1918
HpyCH4III ACNGT 6 cut(s) 434, 997, 1033, 1352, 1472, 1994
HpyCH4IV ACGT 3 cut(s) 180, 495, 1799
HpyCH4V TGCA 6 cut(s) 685, 700, 754, 1100, 1427, 1730
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 1619, 1783
HpySE526I ACGT 3 cut(s) 180, 495, 1799
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 4 cut(s) 371, 1286, 1431, 1786
HspAI GCGC 3 cut(s) 60, 456, 554
KspAI GTTAAC 1 cut(s) 732
Kzo9I GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
LmnI GCTCC 5 cut(s) 667, 1706, 1774, 1819, 1849
Lsp1109I GCAGC 2 cut(s) 684, 1477
LweI GCATC 5 cut(s) 21, 202, 480, 700, 1156
MaeI CTAG 2 cut(s) 735, 972
MaeII ACGT 3 cut(s) 180, 495, 1799
MaeIII GTNAC 4 cut(s) 41, 226, 770, 1352
MalI GATC 7 cut(s) 68, 321, 346, 366, 1131, 1137, 1713
MbiI CCGCTC 1 cut(s) 908
MboI GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
MfeI CAATTG 3 cut(s) 1311, 1564, 1809
MflI RGATCY 2 cut(s) 344, 1135
MlyI GAGTC 2 cut(s) 778, 1913
MmeI TCCRAC 3 cut(s) 216, 231, 309
MseI TTAA 6 cut(s) 731, 777, 1056, 1071, 1626, 1694
MslI CAYNNNNRTG 3 cut(s) 1281, 1287, 1470
MspA1I CMGCKG 3 cut(s) 375, 589, 1249
MspI CCGG 4 cut(s) 351, 500, 726, 954
MspR9I CCNGG 4 cut(s) 352, 727, 954, 1975
MunI CAATTG 3 cut(s) 1311, 1564, 1809
Mva1269I GAATGC 1 cut(s) 973
MvaI CCWGG 1 cut(s) 1975
MvnI CGCG 3 cut(s) 22, 458, 554
MwoI GCNNNNNNNGC 3 cut(s) 221, 1619, 1783
NciI CCSGG 3 cut(s) 352, 727, 954
NdeI CATATG 1 cut(s) 1678
NdeII GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
NlaIII CATG 4 cut(s) 371, 1286, 1431, 1786
NlaIV GGNNCC 5 cut(s) 29, 346, 786, 1137, 1244
NmuCI GTSAC 2 cut(s) 226, 770
NspI RCATGY 2 cut(s) 1286, 1786
NspV TTCGAA 1 cut(s) 1434
PcsI WCGNNNNNNNCGW 6 cut(s) 243, 264, 273, 279, 306, 315
PctI GAATGC 1 cut(s) 973
PfeI GAWTC 4 cut(s) 949, 1049, 1523, 1948
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 8 cut(s) 24, 27, 223, 241, 588, 699, 842, 1492
PleI GAGTC 2 cut(s) 777, 1912
PpsI GAGTC 2 cut(s) 777, 1912
Psp6I CCWGG 1 cut(s) 1973
PspGI CCWGG 1 cut(s) 1973
PspN4I GGNNCC 5 cut(s) 29, 346, 786, 1137, 1244
PspPI GGNCC 1 cut(s) 27
PsrI GAACNNNNNNTAC 2 cut(s) 1987, 2019
PsuI RGATCY 2 cut(s) 344, 1135
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 53, 1402
RsaNI GTAC 2 cut(s) 52, 1401
RseI CAYNNNNRTG 3 cut(s) 1281, 1287, 1470
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 6 cut(s) 731, 777, 1056, 1071, 1626, 1694
SatI GCNGC 8 cut(s) 23, 26, 222, 240, 587, 698, 841, 1491
Sau3AI GATC 7 cut(s) 66, 319, 344, 364, 1129, 1135, 1711
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 2 cut(s) 778, 1913
ScrFI CCNGG 4 cut(s) 352, 727, 954, 1975
SfaNI GCATC 5 cut(s) 21, 202, 480, 700, 1156
SfuI TTCGAA 1 cut(s) 1434
SgrDI CGTCGACG 1 cut(s) 278
SmiMI CAYNNNNRTG 3 cut(s) 1281, 1287, 1470
SmlI CTYRAG 2 cut(s) 1256, 1828
SmoI CTYRAG 2 cut(s) 1256, 1828
SspMI CTAG 2 cut(s) 735, 972
StyD4I CCNGG 4 cut(s) 350, 725, 952, 1973
TaaI ACNGT 6 cut(s) 434, 997, 1033, 1352, 1472, 1994
TaiI ACGT 3 cut(s) 183, 498, 1802
TaqI TCGA 5 cut(s) 279, 363, 992, 1279, 1434
TatI WGTACW 1 cut(s) 51
TauI GCSGC 6 cut(s) 25, 28, 224, 242, 589, 843
TfiI GAWTC 4 cut(s) 949, 1049, 1523, 1948
Tru1I TTAA 6 cut(s) 731, 777, 1056, 1071, 1626, 1694
Tru9I TTAA 6 cut(s) 731, 777, 1056, 1071, 1626, 1694
TscAI CASTG 4 cut(s) 439, 1477, 1846, 1997
TseFI GTSAC 2 cut(s) 226, 770
TseI GCWGC 2 cut(s) 697, 1490
Tsp45I GTSAC 2 cut(s) 226, 770
TspDTI ATGAA 1 cut(s) 978
TspGWI ACGGA 5 cut(s) 5, 82, 1169, 1747, 1750
TspRI CASTG 4 cut(s) 439, 1477, 1846, 1997
Tth111I GACNNNGTC 1 cut(s) 269
XapI RAATTY 4 cut(s) 334, 985, 1213, 1893
XceI RCATGY 2 cut(s) 1286, 1786
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 2 cut(s) 735, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.