AT4G20790

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014603
Physical Location & Seq
Reverse (-)
11134775 .. 11136423
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20790.1

Sequence Viewer

Length: 1557 bp
ATGGCGTCTTCTCTGTTCTTCATCTTCTTCCTCACGTCACTACTATCATCCTATCTTCCTCTCTCAGTATTCTCCGCAACCGTCGTCGAAGACCTCGCTAATCTAAGTCCACCTCCTGATTTCAACACCACTATTTCCAACAACTGTCTTCGTGATCCAATGCTCCGTTACTGCAACAACACTTCCTCTTCTCCAATGGACATTGTCGAGATTTTCAGATCCACAATCGTCGCTAGTCATCTCTGTAACGAGTCCAAAAACCCTAACTGCGTTGAATCTTTCCCTAGAATCAGAATTCACGGTCGTCCTAAAACCGCTGCTCTTTACCTCTCTTTCGATTTCTTCTGGAAGTACTGTCCTTTAACCGTCGTTGATATCGAGTTAGTGAATAACTCTCTAACGAATGGTTTTCCGACAAATGTTCTGTCTTGTGCTCAGATTCGTACTCTTGATCTGAGTTACAACCAATTCTCTGGTTTTGTTCCGGTTCAAGATCTCTCAGGCTTACCCAATCTGACCCATTTGAACCTATCGTATAACCGATTCTCCGAGAATAAGATCTCGGATTCTGAGTTCTTCAAACGGTTTAACGCCTCTAGTTTCATACAGTCCGGTGTTCTTCCCAACGTGAAGCGTTACAAGATGAAAGTTTTGGTCTTGTTGATTGTTTTTCCAATAATGGTGATTTTGCTCTGTTTTTGCTTTGGCTGGTTATGTGTCAAGAGACCTGATTACTTACCAAGAACATGCCGGAGAAGAAACAAGTTCACATTCGCGATGCTTGAAGCAGCAACGGATGAGTTTTCAGATCAACATCTTGTGAGCATGAGCAATACAGTGGATATCTACAAAGGAACGTTAAGAGACGGGACAGAGACGAAGATCGAGGTTTATAAAGAGAAGGTTTCGAGTGAGAAAAGGCGTGAATTCGCAGAGGTATGCGAGATGGTTTTTAAGTTACGACACAAGAACTTGGTAAGAGTGTTGGGTTGGTGTAATAGTAGAAACATGAGAGCTTTGGTTACAGAATGGATTCAAGGTGAAAATGTTGAGACTTGGTTAAGTTCGTCAATGGCTTTATCATGGAGAAGAAGGTTAAGAGTAGTTCTAGGAGTTGTAGAAGGTATTTGTTATCTATCAGATCAATGGCCAGAGATTACATTTGATCTCACCACAAGCAGTGTTTTGTTATCCGATGATAATCAAGAACCTTTGATTTCTCATTTCAAGATTGGAGATAGAAACAACTTGTCAACAAATATATTCAACTTTGGATTGTTTTTTGTGGAGATGATTACAAATCTAAGACCTGATTTGGGACAAGAAGATTCAGAAAGAAGGTATCTTGAGTATATAAGAGTTCATTATCCGGATAATCTAGAGAGAGTGATTGATGAGAAGATGAAGATTGAGGGGAGAACATTTGATCAAGTTAAGCAAGCCATTACGCTAGGACTGATGTGTACTGATATAATACCACCATTAAAGCAACCAAGCTTGACGCAGATTTATGACTTGGTGAGTTCATTGTATGAGTCTAGTTCACGACATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase_Tyr

Protein Analysis

518

Amino Acids

59.73

Weight (kDa)

7.08

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 126 - 182 1.6e-07 Leucine rich repeat
LRR_4 PF12799 147 - 193 3.9e-06 Leucine Rich repeats (2 copies)
PK_Tyr_Ser-Thr PF07714 281 - 401 1.5e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 297 - 413 1.3e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20790
fragaria_vesca FvH4_3g11180
malus_domestica MD05G1265400.v1.1 MD10G1243400.v1.1
prunus_persica Prupe.4G100500_v2.0.a1
pyrus_communis pycom05g24940 pycom10g20360
rosa_chinensis RchiOBHm_Chr5g0018091
rosa_laevigata RLG00000032339
rosa_multiflora Rmu_sc0010280.1_g000019
rosa_roxburghii Rroxscaffold_1G00059530
rosa_rugosa Rorug05G0040400
rosa_samantha Rh5AG133100 Rh5BG131700 Rh5CG143700 Rh5DG133400
rosa_wichuraiana Rw5G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AccII CGCG 1 cut(s) 776
AccIII TCCGGA 1 cut(s) 1369
AciI CCGC 2 cut(s) 75, 315
AclI AACGTT 1 cut(s) 857
AclWI GGATC 2 cut(s) 149, 213
AcoI YGGCCR 1 cut(s) 1148
AcsI RAATTY 2 cut(s) 294, 926
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 353, 445, 1465
AfiI CCNNNNNNNGG 1 cut(s) 1316
AgsI TTSAA 9 cut(s) 124, 275, 491, 526, 580, 785, 1037, 1228, 1267
AjiI CACGTC 1 cut(s) 36
AloI GAACNNNNNNTCC 2 cut(s) 557, 589
AluBI AGCT 2 cut(s) 1016, 1497
AluI AGCT 2 cut(s) 1016, 1497
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 4 cut(s) 718, 858, 869, 1046
AlwI GGATC 2 cut(s) 149, 213
Aor13HI TCCGGA 1 cut(s) 1369
AoxI GGCC 1 cut(s) 1148
ApeKI GCWGC 2 cut(s) 317, 788
ApoI RAATTY 2 cut(s) 294, 926
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
Asp700I GAANNNNTTC 1 cut(s) 1032
AsuHPI GGTGA 4 cut(s) 694, 1052, 1162, 1531
BalI TGGCCA 1 cut(s) 1150
BbsI GAAGAC 2 cut(s) 96, 140
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 304, 800
BccI CCATC 1 cut(s) 940
BclI TGATCA 1 cut(s) 1426
BcoDI GTCTC 4 cut(s) 718, 858, 869, 1046
BfaI CTAG 7 cut(s) 234, 285, 597, 1109, 1379, 1451, 1539
BglII AGATCT 2 cut(s) 493, 558
BisI GCNGC 2 cut(s) 318, 789
BlsI GCNGC 2 cut(s) 319, 790
BmcAI AGTACT 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 36
BmsI GCATC 1 cut(s) 768
BpiI GAAGAC 2 cut(s) 96, 140
BpuEI CTTGAG 1 cut(s) 1367
BsaBI GATNNNNATC 2 cut(s) 813, 1200
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 718
BsaWI WCCGGW 3 cut(s) 484, 611, 1369
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 1316
Bse8I GATNNNNATC 2 cut(s) 813, 1200
BseAI TCCGGA 1 cut(s) 1369
BseGI GGATG 2 cut(s) 47, 802
BseJI GATNNNNATC 2 cut(s) 813, 1200
BseLI CCNNNNNNNGG 1 cut(s) 1316
BseMII CTCAG 5 cut(s) 78, 446, 449, 513, 561
BseXI GCAGC 2 cut(s) 304, 800
Bsh1236I CGCG 1 cut(s) 776
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 1150
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 4 cut(s) 485, 612, 751, 1370
BslFI GGGAC 2 cut(s) 883, 1332
BslI CCNNNNNNNGG 1 cut(s) 1316
BsmAI GTCTC 4 cut(s) 718, 858, 869, 1046
BsmBI CGTCTC 2 cut(s) 858, 869
BsmFI GGGAC 2 cut(s) 883, 1332
BsnI GGCC 1 cut(s) 1150
Bso31I GGTCTC 1 cut(s) 718
Bsp1286I GDGCHC 1 cut(s) 436
Bsp13I TCCGGA 1 cut(s) 1369
Bsp68I TCGCGA 1 cut(s) 776
BspACI CCGC 2 cut(s) 75, 315
BspANI GGCC 1 cut(s) 1150
BspCNI CTCAG 5 cut(s) 77, 447, 448, 512, 562
BspEI TCCGGA 1 cut(s) 1369
BspFNI CGCG 1 cut(s) 776
BspPI GGATC 2 cut(s) 149, 213
BspTNI GGTCTC 1 cut(s) 718
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 8 cut(s) 82, 146, 302, 356, 367, 585, 609, 838
Bst6I CTCTTC 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 1440
BstDEI CTNAG 7 cut(s) 64, 104, 435, 455, 499, 570, 1304
BstF5I GGATG 2 cut(s) 47, 802
BstFNI CGCG 1 cut(s) 776
BstMAI GTCTC 4 cut(s) 718, 858, 869, 1046
BstMCI CGRYCG 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 750
BstUI CGCG 1 cut(s) 776
BstV1I GCAGC 2 cut(s) 304, 800
BstV2I GAAGAC 2 cut(s) 96, 140
BstX2I RGATCY 3 cut(s) 218, 493, 558
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 3 cut(s) 218, 493, 558
BsuRI GGCC 1 cut(s) 1150
BtgZI GCGATG 1 cut(s) 791
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 2 cut(s) 47, 802
BtsI GCAGTG 1 cut(s) 1186
BtsIMutI CAGTG 2 cut(s) 843, 1186
BtuMI TCGCGA 1 cut(s) 776
Cac8I GCNNGC 1 cut(s) 1440
CseI GACGC 1 cut(s) 1510
Csp6I GTAC 3 cut(s) 352, 444, 1464
CviAII CATG 4 cut(s) 747, 826, 1009, 1083
CviJI RGCY 7 cut(s) 504, 708, 1016, 1076, 1150, 1442, 1497
CviKI_1 RGCY 7 cut(s) 504, 708, 1016, 1076, 1150, 1442, 1497
CviQI GTAC 3 cut(s) 352, 444, 1464
DdeI CTNAG 7 cut(s) 64, 104, 435, 455, 499, 570, 1304
EaeI YGGCCR 1 cut(s) 1148
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 718
Eco32I GATATC 2 cut(s) 376, 844
EcoRI GAATTC 2 cut(s) 294, 926
EcoRV GATATC 2 cut(s) 376, 844
Esp3I CGTCTC 2 cut(s) 858, 869
FaeI CATG 4 cut(s) 750, 829, 1012, 1086
FaqI GGGAC 2 cut(s) 883, 1332
FatI CATG 4 cut(s) 746, 825, 1008, 1082
FbaI TGATCA 1 cut(s) 1426
Fnu4HI GCNGC 2 cut(s) 318, 789
FokI GGATG 2 cut(s) 34, 809
Fsp4HI GCNGC 2 cut(s) 318, 789
FspBI CTAG 7 cut(s) 234, 285, 597, 1109, 1379, 1451, 1539
GluI GCNGC 2 cut(s) 318, 789
HaeIII GGCC 1 cut(s) 1150
HapII CCGG 4 cut(s) 485, 612, 751, 1370
HgaI GACGC 1 cut(s) 1510
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 750, 829, 1012, 1086
HincII GTYRAC 1 cut(s) 1254
HindII GTYRAC 1 cut(s) 1254
HindIII AAGCTT 1 cut(s) 1495
HinfI GANTC 9 cut(s) 251, 275, 288, 439, 543, 566, 1033, 1328, 1535
HpaII CCGG 4 cut(s) 485, 612, 751, 1370
HphI GGTGA 4 cut(s) 694, 1052, 1162, 1531
Hpy166II GTNNAC 5 cut(s) 110, 768, 1254, 1464, 1544
Hpy8I GTNNAC 5 cut(s) 110, 768, 1254, 1464, 1544
Hpy99I CGWCG 4 cut(s) 86, 89, 233, 371
HpyAV CCTTC 4 cut(s) 895, 1086, 1115, 1332
HpyCH4III ACNGT 8 cut(s) 82, 146, 302, 356, 367, 585, 609, 838
HpyCH4IV ACGT 3 cut(s) 35, 627, 857
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 7 cut(s) 64, 104, 435, 455, 499, 570, 1304
HpySE526I ACGT 3 cut(s) 35, 627, 857
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 750, 829, 1012, 1086
Kpn2I TCCGGA 1 cut(s) 1369
Ksp22I TGATCA 1 cut(s) 1426
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 2 cut(s) 304, 800
LweI GCATC 1 cut(s) 768
MaeI CTAG 7 cut(s) 234, 285, 597, 1109, 1379, 1451, 1539
MaeII ACGT 3 cut(s) 35, 627, 857
MaeIII GTNAC 7 cut(s) 36, 167, 245, 458, 635, 957, 1021
MflI RGATCY 3 cut(s) 218, 493, 558
MhlI GDGCHC 1 cut(s) 436
MlsI TGGCCA 1 cut(s) 1150
MluCI AATT 3 cut(s) 294, 467, 926
MluNI TGGCCA 1 cut(s) 1150
MlyI GAGTC 2 cut(s) 260, 1544
MmeI TCCRAC 2 cut(s) 162, 437
Mox20I TGGCCA 1 cut(s) 1150
MroI TCCGGA 1 cut(s) 1369
MroXI GAANNNNTTC 1 cut(s) 1032
MscI TGGCCA 1 cut(s) 1150
MseI TTAA 8 cut(s) 362, 588, 860, 954, 1061, 1097, 1434, 1484
Msp20I TGGCCA 1 cut(s) 1150
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 4 cut(s) 485, 612, 751, 1370
MvnI CGCG 1 cut(s) 776
NlaIII CATG 4 cut(s) 750, 829, 1012, 1086
NmuCI GTSAC 1 cut(s) 36
NruI TCGCGA 1 cut(s) 776
NspI RCATGY 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 7 cut(s) 275, 288, 439, 543, 566, 1033, 1328
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 319, 790
PleI GAGTC 2 cut(s) 259, 1543
PpsI GAGTC 2 cut(s) 259, 1543
PsiI TTATAA 1 cut(s) 894
Psp1406I AACGTT 1 cut(s) 857
PsuI RGATCY 3 cut(s) 218, 493, 558
PsyI GACNNNGTC 1 cut(s) 203
RruI TCGCGA 1 cut(s) 776
RsaI GTAC 3 cut(s) 353, 445, 1465
RsaNI GTAC 3 cut(s) 352, 444, 1464
SaqAI TTAA 8 cut(s) 362, 588, 860, 954, 1061, 1097, 1434, 1484
SatI GCNGC 2 cut(s) 318, 789
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 260, 1544
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 1346
SmoI CTYRAG 1 cut(s) 1346
Sse9I AATT 3 cut(s) 294, 467, 926
SsiI CCGC 2 cut(s) 75, 315
SspMI CTAG 7 cut(s) 234, 285, 597, 1109, 1379, 1451, 1539
TaaI ACNGT 8 cut(s) 82, 146, 302, 356, 367, 585, 609, 838
TaiI ACGT 3 cut(s) 38, 630, 860
TaqI TCGA 6 cut(s) 87, 207, 336, 378, 885, 908
TasI AATT 3 cut(s) 294, 467, 926
TatI WGTACW 2 cut(s) 351, 1463
TfiI GAWTC 7 cut(s) 275, 288, 439, 543, 566, 1033, 1328
Tru1I TTAA 8 cut(s) 362, 588, 860, 954, 1061, 1097, 1434, 1484
Tru9I TTAA 8 cut(s) 362, 588, 860, 954, 1061, 1097, 1434, 1484
TscAI CASTG 2 cut(s) 843, 1186
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 2 cut(s) 317, 788
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 6 cut(s) 10, 592, 659, 1352, 1418, 1515
TspGWI ACGGA 2 cut(s) 155, 809
TspRI CASTG 2 cut(s) 843, 1186
Tth111I GACNNNGTC 1 cut(s) 203
XapI RAATTY 2 cut(s) 294, 926
XbaI TCTAGA 1 cut(s) 1378
XceI RCATGY 1 cut(s) 750
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 7 cut(s) 234, 285, 597, 1109, 1379, 1451, 1539
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.