pycom05g24940

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014603
Physical Location & Seq
Reverse (-)
26414620 .. 26415778
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24940.1

Sequence Viewer

Length: 1062 bp
ATGAGCCATAATGACCTTTACGGCGATGTCCCAATAGAGAGCTTCTCTCCCCATGCCAACCTCACTTCTCTTAATTTATCATATAATCACTTCTCCGAGAGTAAAATCTCTGATGCCCTCTTCTTTAAACGGTTCAATTCTTCGAGTTTTCTCCATTCGGGTCTCCTCCCCCATAAGAAAAAGTTCAGGATCGATGCTGTAATCTTGTTGGTTGGTTTTCCGATCTTTGTGATCCTGATGGTGTGTTGGTTGGGGTGGCTTTGTTTCCAGAGGCCTGATTTTCTCCCAAGAATGCTTCGCAGAAAATATTGGTTTACACCAGCAATGCTCAAGGCAGCAACAAATGGATTTTCGAGAAGAAATTTGAAAGGCAAGAGTGAAGCAGTTGATATCTATAGAGGAACTCTGAGAGGTGACACTGAAGTCAGGATTGAGATTTACGGAAGTGAAAACCACCCAAACTTGATCGAAGAGTGCAAGGTTCTCGTTCAGTTACGCCACAAGAACTTGATTAGTGTATTGGGTTGGTGCAAGAACAGAAGGTTGAGAGCCATCGTGACCGAATGGACGGAAGGAGAGTGCCTTGAGATGTGGCTATTGGAGTCAAACAGTACACCATGGAATCACAGGCTGAAGATATTGATGGGGGTTGTGGAAGGCATGTGTTATCTGCAGGAGGAATGGCCTGAAGTTGGATATGATCTCAGGACAAGCAGTATCTTGCTGTCAAACAATCTGGAGCCGCGAATTTCGAGGTTTAAGATCGGGGATCAAAGCAGCAGAAGTAGAAAGATCTACAAGTTAGGAGTGCTTCTACTAGAGATGCTCGTAAACAGGCGGCCGCAGGAAGACTTCGAGACAGGCGAGGCTGGGTTTCTCGAGTATATCAGAATGCATTATCCTGGAAATTTGCAGAAGGTGATAGACCAGAAATTGGAACTGACACAAAATACTTTTGATCAAGCTAAACAGGCAATAGGGCTAGGGCTAATGTGCACAGATCTATCCAGCAACCAACAACTAAGCTTGGTTCAAGTGTTTGATATCATGAGTAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase_Tyr

Protein Analysis

354

Amino Acids

40.92

Weight (kDa)

8.87

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 131 - 258 9.7e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 150 - 257 4e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20790
fragaria_vesca FvH4_3g11180
malus_domestica MD05G1265400.v1.1 MD10G1243400.v1.1
prunus_persica Prupe.4G100500_v2.0.a1
pyrus_communis pycom05g24940 pycom10g20360
rosa_chinensis RchiOBHm_Chr5g0018091
rosa_laevigata RLG00000032339
rosa_multiflora Rmu_sc0010280.1_g000019
rosa_roxburghii Rroxscaffold_1G00059530
rosa_rugosa Rorug05G0040400
rosa_samantha Rh5AG133100 Rh5BG131700 Rh5CG143700 Rh5DG133400
rosa_wichuraiana Rw5G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 934
AccII CGCG 1 cut(s) 745
AciI CCGC 3 cut(s) 743, 838, 842
AclWI GGATC 3 cut(s) 197, 226, 777
AcoI YGGCCR 1 cut(s) 839
AcsI RAATTY 3 cut(s) 361, 747, 907
AcuI CTGAAG 3 cut(s) 441, 653, 708
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 2 cut(s) 692, 934
AgsI TTSAA 3 cut(s) 136, 367, 1034
AjnI CCWGG 1 cut(s) 901
AluBI AGCT 3 cut(s) 42, 965, 1026
AluI AGCT 3 cut(s) 42, 965, 1026
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 2 cut(s) 167, 851
Alw44I GTGCAC 1 cut(s) 994
AlwI GGATC 3 cut(s) 197, 226, 777
Ama87I CYCGRG 1 cut(s) 878
AoxI GGCC 3 cut(s) 272, 683, 839
ApaLI GTGCAC 1 cut(s) 994
ApeKI GCWGC 2 cut(s) 335, 777
ApoI RAATTY 3 cut(s) 361, 747, 907
Asp700I GAANNNNTTC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 425, 931
AvaI CYCGRG 1 cut(s) 878
BaeGI GKGCMC 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 998
BbvI GCAGC 2 cut(s) 347, 789
BccI CCATC 3 cut(s) 232, 560, 637
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 1 cut(s) 903
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 2 cut(s) 167, 851
BfaI CTAG 2 cut(s) 818, 983
BfmI CTRYAG 2 cut(s) 394, 671
BglII AGATCT 2 cut(s) 792, 1000
BisI GCNGC 5 cut(s) 336, 743, 778, 839, 842
BlsI GCNGC 5 cut(s) 337, 744, 779, 840, 843
Bme1390I CCNGG 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 878
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 1 cut(s) 903
BmsI GCATC 3 cut(s) 103, 184, 813
BpiI GAAGAC 1 cut(s) 855
BplI GAGNNNNNCTC 4 cut(s) 29, 61, 31, 63
BpmI CTGGAG 1 cut(s) 758
BpuEI CTTGAG 2 cut(s) 314, 605
Bsa29I ATCGAT 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 617
Bsc4I CCNNNNNNNGG 2 cut(s) 692, 934
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 903
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 617
BseLI CCNNNNNNNGG 2 cut(s) 692, 934
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 398, 718
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 998
BseX3I CGGCCG 1 cut(s) 839
BseXI GCAGC 2 cut(s) 347, 789
BseYI CCCAGC 1 cut(s) 869
Bsh1236I CGCG 1 cut(s) 745
Bsh1285I CGRYCG 1 cut(s) 842
BshFI GGCC 3 cut(s) 274, 685, 841
BshVI ATCGAT 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 842
BsiHKAI GWGCWC 1 cut(s) 998
BsiHKCI CYCGRG 1 cut(s) 878
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 692, 934
BsmAI GTCTC 2 cut(s) 167, 851
BsmFI GGGAC 1 cut(s) 14
BsmI GAATGC 2 cut(s) 297, 897
BsnI GGCC 3 cut(s) 274, 685, 841
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 878
Bsp1286I GDGCHC 1 cut(s) 998
Bsp19I CCATGG 1 cut(s) 617
BspACI CCGC 3 cut(s) 743, 838, 842
BspANI GGCC 3 cut(s) 274, 685, 841
BspCNI CTCAG 2 cut(s) 399, 717
BspDI ATCGAT 1 cut(s) 192
BspFNI CGCG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 1047
BspLI GGNNCC 1 cut(s) 741
BspMAI CTGCAG 1 cut(s) 675
BspPI GGATC 3 cut(s) 197, 226, 777
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 2 cut(s) 132, 611
Bst6I CTCTTC 2 cut(s) 125, 465
BstDEI CTNAG 3 cut(s) 407, 704, 1022
BstDSI CCRYGG 1 cut(s) 617
BstFNI CGCG 1 cut(s) 745
BstMAI GTCTC 2 cut(s) 167, 851
BstMCI CGRYCG 1 cut(s) 842
BstMWI GCNNNNNNNGC 1 cut(s) 971
BstNI CCWGG 1 cut(s) 903
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 2 cut(s) 394, 671
BstSLI GKGCMC 1 cut(s) 998
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 347, 789
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 2 cut(s) 792, 1000
BstYI RGATCY 2 cut(s) 792, 1000
BstZI CGGCCG 1 cut(s) 839
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 3 cut(s) 274, 685, 841
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 617
BtgZI GCGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 417
CciI TCATGA 1 cut(s) 1047
CciNI GCGGCCGC 1 cut(s) 839
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 612
CviAII CATG 4 cut(s) 53, 618, 661, 1048
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 3 cut(s) 407, 704, 1022
DraI TTTAAA 1 cut(s) 127
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 839
EagI CGGCCG 1 cut(s) 839
Eam1104I CTCTTC 2 cut(s) 125, 465
EarI CTCTTC 2 cut(s) 125, 465
EclXI CGGCCG 1 cut(s) 839
Eco130I CCWWGG 1 cut(s) 617
Eco147I AGGCCT 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 2 cut(s) 391, 1045
Eco52I CGGCCG 1 cut(s) 839
Eco57I CTGAAG 3 cut(s) 441, 653, 708
Eco88I CYCGRG 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 901
EcoRV GATATC 2 cut(s) 391, 1045
EcoT14I CCWWGG 1 cut(s) 617
EcoT22I ATGCAT 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 617
FaeI CATG 4 cut(s) 56, 621, 664, 1051
FaqI GGGAC 1 cut(s) 14
FatI CATG 4 cut(s) 52, 617, 660, 1047
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 5 cut(s) 336, 743, 778, 839, 842
Fsp4HI GCNGC 5 cut(s) 336, 743, 778, 839, 842
FspBI CTAG 2 cut(s) 818, 983
GluI GCNGC 5 cut(s) 336, 743, 778, 839, 842
GsaI CCCAGC 1 cut(s) 873
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 3 cut(s) 274, 685, 841
Hin1II CATG 4 cut(s) 56, 621, 664, 1051
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 2 cut(s) 602, 622
HphI GGTGA 2 cut(s) 425, 931
Hpy166II GTNNAC 4 cut(s) 315, 614, 832, 996
Hpy188I TCNGA 5 cut(s) 97, 112, 222, 408, 890
Hpy8I GTNNAC 4 cut(s) 315, 614, 832, 996
HpyAV CCTTC 4 cut(s) 534, 566, 650, 910
HpyCH4III ACNGT 2 cut(s) 132, 611
HpyCH4V TGCA 6 cut(s) 477, 531, 673, 895, 913, 996
HpyF10VI GCNNNNNNNGC 1 cut(s) 971
HpyF3I CTNAG 3 cut(s) 407, 704, 1022
Hsp92II CATG 4 cut(s) 56, 621, 664, 1051
Ksp22I TGATCA 1 cut(s) 958
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 2 cut(s) 347, 789
LweI GCATC 3 cut(s) 103, 184, 813
MaeI CTAG 2 cut(s) 818, 983
MaeIII GTNAC 3 cut(s) 413, 492, 556
MboII GAAGA 6 cut(s) 112, 132, 369, 482, 646, 860
MflI RGATCY 2 cut(s) 792, 1000
MhlI GDGCHC 1 cut(s) 998
MluCI AATT 6 cut(s) 73, 136, 361, 747, 907, 932
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 673
MnlI CCTC 9 cut(s) 71, 128, 176, 264, 392, 404, 670, 747, 859
Mph1103I ATGCAT 1 cut(s) 897
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 3 cut(s) 72, 126, 759
MspR9I CCNGG 1 cut(s) 903
Mva1269I GAATGC 2 cut(s) 297, 897
MvaI CCWGG 1 cut(s) 903
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 1 cut(s) 971
NcoI CCATGG 1 cut(s) 617
NlaIII CATG 4 cut(s) 56, 621, 664, 1051
NlaIV GGNNCC 1 cut(s) 741
NmuCI GTSAC 2 cut(s) 413, 556
NotI GCGGCCGC 1 cut(s) 839
NsiI ATGCAT 1 cut(s) 897
NspI RCATGY 1 cut(s) 664
PaeR7I CTCGAG 1 cut(s) 878
PagI TCATGA 1 cut(s) 1047
PceI AGGCCT 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 861
PctI GAATGC 2 cut(s) 297, 897
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 934
PfoI TCCNGGA 1 cut(s) 901
PkrI GCNGC 5 cut(s) 337, 744, 779, 840, 843
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 1 cut(s) 901
PspN4I GGNNCC 1 cut(s) 741
PstI CTGCAG 1 cut(s) 675
PsuI RGATCY 2 cut(s) 792, 1000
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
SaqAI TTAA 3 cut(s) 72, 126, 759
SatI GCNGC 5 cut(s) 336, 743, 778, 839, 842
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 1 cut(s) 998
SfaNI GCATC 3 cut(s) 103, 184, 813
SfcI CTRYAG 2 cut(s) 394, 671
Sfr274I CTCGAG 1 cut(s) 878
SlaI CTCGAG 1 cut(s) 878
SmlI CTYRAG 3 cut(s) 329, 584, 878
SmoI CTYRAG 3 cut(s) 329, 584, 878
Sse9I AATT 6 cut(s) 73, 136, 361, 747, 907, 932
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 3 cut(s) 743, 838, 842
SspI AATATT 1 cut(s) 308
SspMI CTAG 2 cut(s) 818, 983
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 901
StyI CCWWGG 1 cut(s) 617
TaaI ACNGT 2 cut(s) 132, 611
TaqI TCGA 7 cut(s) 143, 192, 353, 468, 752, 855, 879
TaqII GACCGA 1 cut(s) 575
TasI AATT 6 cut(s) 73, 136, 361, 747, 907, 932
TatI WGTACW 1 cut(s) 611
TauI GCSGC 3 cut(s) 745, 841, 844
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 3 cut(s) 72, 126, 759
Tru9I TTAA 3 cut(s) 72, 126, 759
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 2 cut(s) 413, 556
TseI GCWGC 2 cut(s) 335, 777
Tsp45I GTSAC 2 cut(s) 413, 556
TspGWI ACGGA 2 cut(s) 456, 584
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 994
XapI RAATTY 3 cut(s) 361, 747, 907
XceI RCATGY 1 cut(s) 664
XhoI CTCGAG 1 cut(s) 878
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 818, 983
Zsp2I ATGCAT 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.