Rroxscaffold_1G00059530

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014603
Physical Location & Seq
Forward (+)
81535707 .. 81537420
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059530.1

Sequence Viewer

Length: 1590 bp
ATGGCTTCCACTTCTGCAACTTTCGTCATCCTAGTATTCACGATTTCATTCTCAGTTTCTGCAACTCTATCTGCATCAGTTATAGATGACCTTAAACGTTTAAAACCACCTCAAGATTTCAACTCCACAATCATGAAAAACTGTCTTCAGAACCCATCTCTCAGATACTGCAGCACTTCTTCTCCAATGGACCTTGATGAGATTTTCAAATCCACCGTTGTTGCAAGCCATCTCTGCAACGAGTCCAAGAACCCGAACTGCGTCGAGTCATTCCCTAAAGTGGACCTTCGAAGCCGCCCAAACATTGCACCACTCTACTTGTCATTTAACTTCTTTTGGAACATCTTATCTATTGACCTGTCCAATACCTCTTTGAAGAGCAATTTTCCCATTGATGTCCTTCACTGCACCCAAATCCAATCTCTTGATATGAGCCATAATGAACTGTATGGTGATGTGCCAATTGAGAACTTTTCTGCCCTCACAAATCTCACAGTTCTAAATCTGTCATACAATCACTTCTCAGAGAGTAAAATATCTGATACCCTGTTCTTCAAAAAGTTTAACTGTTCCAGTTTTCTTCATTCGGGTCTCATTCTCGATCACAAAAAGTTCAGAATCAAGGCTATAGTCTTGTTGATTGGTTTTCCTATCTTTGTGATTCTGAAGGTGTGTTGCTTGTGGTGGCTCTGTTTTCACAGGCCTGATTTCCTCCCTAGAATGTTTCAAAGAAAGCACAGGTTTACACCAGCAATGCTCAAGGCAGCAACCAATGGATTTTCGAGGAACAATTTGATGGGGAAGAGTGCATCAGTTGATATTTACAAAGGAATTCTGAGAGATGGTACTGATGTCAGGATTGAGGTTTACAGTAGGGAAAGCCACCCGCAAGTGATTGAAGAATGCAAGGTTCTTGTTCAGCTATGCCACAAGAACCTGGTTAATTTACTGGGTTGGTGTGACAACCGAAAGTTGAGGGCCATTGTTATTGAATGGATGGAAGGAGAGAACCTAGAGAGCTGGCTCTTGGGATCAAGTTTTACACCATGGAACTACAGGTTGAGAATATTGATGGGGGTTGTGGAAGGCATGTGTTATCTACAGGAGCAGTGGCCTGAAGTTGGGTATGATCTGAGGACAAGTAGTATCATGTTGTGTAACTACAGTCTGGACCCAAAGATTTCAAGGTTTAAAGTTGGAAATCAAAGCAGTAGCAGTAGAAGAATGTACAAGTTTGGAGTATTCCTGCTAGAAATGATGGTAAACAGGAGGCCACAAGAAGAGTTTGAGAGGGGCGAGGCTGGTTTTATAGAGTATATCAGAATGCATTATCCTGGAAACTTAGAGCAACTAATAGACCCGAAAATGGAATTGACTCAAAACACTGTCGACCAAGCTAAACAGGCAATATCCCTGGGGCTAATGTGCACAGAAGTATCTAGCAACCGGCAACCAAGCTTAGAACAGGTGTTTGATATTGTGAGTAGAGCCTACCAGTCTTGCAGAGTTTTAGCATCTCATCATAATCATTATCACAGAAGATTTCATGCAGAAAGAGGAAAAGGACACAGGCGTGTGCAATCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase_Tyr

Protein Analysis

529

Amino Acids

61.02

Weight (kDa)

8.89

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 265 - 395 3.5e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 291 - 408 1.6e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20790
fragaria_vesca FvH4_3g11180
malus_domestica MD05G1265400.v1.1 MD10G1243400.v1.1
prunus_persica Prupe.4G100500_v2.0.a1
pyrus_communis pycom05g24940 pycom10g20360
rosa_chinensis RchiOBHm_Chr5g0018091
rosa_laevigata RLG00000032339
rosa_multiflora Rmu_sc0010280.1_g000019
rosa_roxburghii Rroxscaffold_1G00059530
rosa_rugosa Rorug05G0040400
rosa_samantha Rh5AG133100 Rh5BG131700 Rh5CG143700 Rh5DG133400
rosa_wichuraiana Rw5G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1389
AciI CCGC 2 cut(s) 295, 887
AclI AACGTT 1 cut(s) 97
AclWI GGATC 1 cut(s) 1039
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 3 cut(s) 131, 686, 1137
AfaI GTAC 2 cut(s) 847, 1229
AfiI CCNNNNNNNGG 3 cut(s) 280, 1121, 1366
AgsI TTSAA 8 cut(s) 121, 208, 376, 556, 728, 899, 992, 1185
AjnI CCWGG 3 cut(s) 936, 1333, 1413
AleI CACNNNNGTG 1 cut(s) 1572
AluBI AGCT 4 cut(s) 922, 1020, 1397, 1458
AluI AGCT 4 cut(s) 922, 1020, 1397, 1458
Alw21I GWGCWC 1 cut(s) 1430
Alw26I GTCTC 1 cut(s) 596
Alw44I GTGCAC 1 cut(s) 1426
AlwI GGATC 1 cut(s) 1039
AlwNI CAGNNNCTG 2 cut(s) 59, 168
AoxI GGCC 4 cut(s) 701, 978, 1112, 1271
ApaLI GTGCAC 1 cut(s) 1426
ApeKI GCWGC 2 cut(s) 171, 764
ApoI RAATTY 1 cut(s) 831
AspS9I GGNCC 4 cut(s) 190, 283, 978, 1171
AsuHPI GGTGA 1 cut(s) 464
AsuII TTCGAA 1 cut(s) 289
AvaII GGWCC 3 cut(s) 190, 283, 1171
BaeGI GKGCMC 1 cut(s) 1430
BaeI ACNNNNGTAYC 4 cut(s) 837, 870, 1419, 1452
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 1430
BbvI GCAGC 2 cut(s) 183, 776
BccI CCATC 7 cut(s) 163, 237, 790, 836, 991, 1066, 1252
BciT130I CCWGG 3 cut(s) 938, 1335, 1415
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 5 cut(s) 32, 717, 1013, 1250, 1440
BfmI CTRYAG 5 cut(s) 169, 627, 1054, 1100, 1162
BisI GCNGC 3 cut(s) 172, 295, 765
BlsI GCNGC 3 cut(s) 173, 296, 766
Bme1390I CCNGG 3 cut(s) 938, 1335, 1415
Bme18I GGWCC 3 cut(s) 190, 283, 1171
BmgT120I GGNCC 4 cut(s) 190, 283, 978, 1171
BmiI GGNNCC 1 cut(s) 1173
BmrFI CCNGG 3 cut(s) 938, 1335, 1415
BmrI ACTGGG 1 cut(s) 959
BmsI GCATC 3 cut(s) 83, 818, 1523
BmuI ACTGGG 1 cut(s) 959
BpiI GAAGAC 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 289
BpuEI CTTGAG 2 cut(s) 96, 743
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 3 cut(s) 1046, 1413, 1414
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 1121, 1366
Bse118I RCCGGY 1 cut(s) 1446
Bse1I ACTGG 3 cut(s) 573, 954, 1495
Bse3DI GCAATG 2 cut(s) 303, 759
BseBI CCWGG 3 cut(s) 938, 1335, 1415
BseDI CCNNGG 3 cut(s) 1046, 1413, 1414
BseGI GGATG 2 cut(s) 27, 1002
BseLI CCNNNNNNNGG 3 cut(s) 280, 1121, 1366
BseMI GCAATG 2 cut(s) 303, 759
BseMII CTCAG 5 cut(s) 66, 175, 537, 827, 1124
BseNI ACTGG 3 cut(s) 573, 954, 1495
BseSI GKGCMC 1 cut(s) 1430
BseXI GCAGC 2 cut(s) 183, 776
BsgI GTGCAG 1 cut(s) 391
BshFI GGCC 4 cut(s) 703, 980, 1114, 1273
BsiHKAI GWGCWC 1 cut(s) 1430
BsiSI CCGG 1 cut(s) 1447
BslI CCNNNNNNNGG 3 cut(s) 280, 1121, 1366
BsmAI GTCTC 1 cut(s) 596
BsmI GAATGC 2 cut(s) 908, 1329
BsnI GGCC 4 cut(s) 703, 980, 1114, 1273
Bso31I GGTCTC 1 cut(s) 596
Bsp119I TTCGAA 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 1430
Bsp1407I TGTACA 1 cut(s) 1227
Bsp143I GATC 3 cut(s) 601, 1031, 1129
Bsp19I CCATGG 1 cut(s) 1046
BspACI CCGC 2 cut(s) 295, 887
BspANI GGCC 4 cut(s) 703, 980, 1114, 1273
BspCNI CTCAG 5 cut(s) 65, 174, 536, 828, 1125
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 1173
BspMAI CTGCAG 1 cut(s) 173
BspPI GGATC 1 cut(s) 1039
BspQI GCTCTTC 1 cut(s) 371
BspT104I TTCGAA 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 303, 759
BsrFI RCCGGY 1 cut(s) 1446
BsrGI TGTACA 1 cut(s) 1227
BsrI ACTGG 3 cut(s) 573, 954, 1495
BssAI RCCGGY 1 cut(s) 1446
BssECI CCNNGG 3 cut(s) 1046, 1413, 1414
BssMI GATC 3 cut(s) 601, 1031, 1129
BssT1I CCWWGG 1 cut(s) 1046
Bst2UI CCWGG 3 cut(s) 938, 1335, 1415
Bst4CI ACNGT 8 cut(s) 143, 217, 447, 496, 569, 872, 1166, 1387
Bst6I CTCTTC 3 cut(s) 371, 797, 1275
BstAUI TGTACA 1 cut(s) 1227
BstBI TTCGAA 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 226, 1022
BstDEI CTNAG 7 cut(s) 52, 161, 523, 836, 1133, 1342, 1459
BstDSI CCRYGG 1 cut(s) 1046
BstF5I GGATG 2 cut(s) 27, 1002
BstKTI GATC 3 cut(s) 604, 1034, 1132
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 3 cut(s) 601, 1031, 1129
BstMWI GCNNNNNNNGC 2 cut(s) 234, 1403
BstNI CCWGG 3 cut(s) 938, 1335, 1415
BstNSI RCATGY 1 cut(s) 1093
BstSCI CCNGG 3 cut(s) 936, 1333, 1413
BstSFI CTRYAG 5 cut(s) 169, 627, 1054, 1100, 1162
BstSLI GKGCMC 1 cut(s) 1430
BstV1I GCAGC 2 cut(s) 183, 776
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 4 cut(s) 703, 980, 1114, 1273
BtgI CCRYGG 1 cut(s) 1046
BtsCI GGATG 2 cut(s) 27, 1002
BtsI GCAGTG 2 cut(s) 403, 1115
BtsIMutI CAGTG 3 cut(s) 403, 1115, 1383
Cac8I GCNNGC 2 cut(s) 226, 1022
CaiI CAGNNNCTG 2 cut(s) 59, 168
CciI TCATGA 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 1446
Cfr13I GGNCC 4 cut(s) 190, 283, 978, 1171
CseI GACGC 1 cut(s) 250
CsiI ACCWGGT 1 cut(s) 936
Csp6I GTAC 2 cut(s) 846, 1228
CspCI CAANNNNNGTGG 4 cut(s) 202, 237, 300, 335
CviAII CATG 5 cut(s) 133, 1047, 1090, 1150, 1547
CviQI GTAC 2 cut(s) 846, 1228
DdeI CTNAG 7 cut(s) 52, 161, 523, 836, 1133, 1342, 1459
DpnI GATC 3 cut(s) 603, 1033, 1131
DpnII GATC 3 cut(s) 601, 1031, 1129
DraI TTTAAA 2 cut(s) 102, 1192
Eam1104I CTCTTC 3 cut(s) 371, 797, 1275
EarI CTCTTC 3 cut(s) 371, 797, 1275
Eco130I CCWWGG 1 cut(s) 1046
Eco147I AGGCCT 1 cut(s) 703
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 3 cut(s) 190, 283, 1171
Eco57I CTGAAG 3 cut(s) 131, 686, 1137
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 3 cut(s) 936, 1333, 1413
EcoT14I CCWWGG 1 cut(s) 1046
EcoT22I ATGCAT 1 cut(s) 1329
ErhI CCWWGG 1 cut(s) 1046
FaeI CATG 5 cut(s) 136, 1050, 1093, 1153, 1550
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 5 cut(s) 132, 1046, 1089, 1149, 1546
FauI CCCGC 1 cut(s) 894
FblI GTMKAC 1 cut(s) 1389
Fnu4HI GCNGC 3 cut(s) 172, 295, 765
FokI GGATG 2 cut(s) 14, 1009
Fsp4HI GCNGC 3 cut(s) 172, 295, 765
FspBI CTAG 5 cut(s) 32, 717, 1013, 1250, 1440
GluI GCNGC 3 cut(s) 172, 295, 765
HaeIII GGCC 4 cut(s) 703, 980, 1114, 1273
HapII CCGG 1 cut(s) 1447
HgaI GACGC 1 cut(s) 250
Hin1II CATG 5 cut(s) 136, 1050, 1093, 1153, 1550
HincII GTYRAC 1 cut(s) 1390
HindII GTYRAC 1 cut(s) 1390
HindIII AAGCTT 1 cut(s) 1456
HinfI GANTC 5 cut(s) 242, 266, 618, 661, 1375
HpaII CCGG 1 cut(s) 1447
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 6 cut(s) 283, 744, 868, 1264, 1390, 1428
Hpy188I TCNGA 9 cut(s) 150, 164, 526, 541, 617, 666, 837, 1134, 1322
Hpy188III TCNNGA 8 cut(s) 40, 113, 133, 425, 599, 856, 1169, 1584
Hpy8I GTNNAC 6 cut(s) 283, 744, 868, 1264, 1390, 1428
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 5 cut(s) 296, 410, 661, 995, 1079
HpyCH4III ACNGT 8 cut(s) 143, 217, 447, 496, 569, 872, 1166, 1387
HpyCH4IV ACGT 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 1403
HpyF3I CTNAG 7 cut(s) 52, 161, 523, 836, 1133, 1342, 1459
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 5 cut(s) 136, 1050, 1093, 1153, 1550
Kzo9I GATC 3 cut(s) 601, 1031, 1129
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 1 cut(s) 1105
Lsp1109I GCAGC 2 cut(s) 183, 776
LweI GCATC 3 cut(s) 83, 818, 1523
MabI ACCWGGT 1 cut(s) 936
MaeI CTAG 5 cut(s) 32, 717, 1013, 1250, 1440
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 959, 1157
MalI GATC 3 cut(s) 603, 1033, 1131
MboI GATC 3 cut(s) 601, 1031, 1129
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 1430
MluCI AATT 6 cut(s) 382, 462, 790, 831, 943, 1370
MlyI GAGTC 3 cut(s) 251, 275, 1369
MmeI TCCRAC 1 cut(s) 1177
Mph1103I ATGCAT 1 cut(s) 1329
MseI TTAA 6 cut(s) 93, 101, 327, 564, 942, 1191
MslI CAYNNNNRTG 2 cut(s) 131, 1572
MspI CCGG 1 cut(s) 1447
MspR9I CCNGG 3 cut(s) 938, 1335, 1415
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 2 cut(s) 908, 1329
MvaI CCWGG 3 cut(s) 938, 1335, 1415
MwoI GCNNNNNNNGC 2 cut(s) 234, 1403
NcoI CCATGG 1 cut(s) 1046
NdeII GATC 3 cut(s) 601, 1031, 1129
NlaIII CATG 5 cut(s) 136, 1050, 1093, 1153, 1550
NlaIV GGNNCC 1 cut(s) 1173
NmuCI GTSAC 1 cut(s) 959
NsiI ATGCAT 1 cut(s) 1329
NspI RCATGY 1 cut(s) 1093
NspV TTCGAA 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 1572
PagI TCATGA 1 cut(s) 132
PasI CCCWGGG 1 cut(s) 1414
PceI AGGCCT 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 371
PctI GAATGC 2 cut(s) 908, 1329
PfeI GAWTC 2 cut(s) 618, 661
PfoI TCCNGGA 1 cut(s) 1333
PkrI GCNGC 3 cut(s) 173, 296, 766
PleI GAGTC 3 cut(s) 250, 274, 1369
PpsI GAGTC 3 cut(s) 250, 274, 1369
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 3 cut(s) 936, 1333, 1413
PspGI CCWGG 3 cut(s) 936, 1333, 1413
PspN4I GGNNCC 1 cut(s) 1173
PspPI GGNCC 4 cut(s) 190, 283, 978, 1171
PstI CTGCAG 1 cut(s) 173
PstNI CAGNNNCTG 2 cut(s) 59, 168
RsaI GTAC 2 cut(s) 847, 1229
RsaNI GTAC 2 cut(s) 846, 1228
RseI CAYNNNNRTG 2 cut(s) 131, 1572
SalI GTCGAC 1 cut(s) 1388
SapI GCTCTTC 1 cut(s) 371
SaqAI TTAA 6 cut(s) 93, 101, 327, 564, 942, 1191
SatI GCNGC 3 cut(s) 172, 295, 765
Sau3AI GATC 3 cut(s) 601, 1031, 1129
Sau96I GGNCC 4 cut(s) 190, 283, 978, 1171
SchI GAGTC 3 cut(s) 251, 275, 1369
ScrFI CCNGG 3 cut(s) 938, 1335, 1415
SduI GDGCHC 1 cut(s) 1430
SexAI ACCWGGT 1 cut(s) 936
SfaNI GCATC 3 cut(s) 83, 818, 1523
SfcI CTRYAG 5 cut(s) 169, 627, 1054, 1100, 1162
SfuI TTCGAA 1 cut(s) 289
SinI GGWCC 3 cut(s) 190, 283, 1171
SmiMI CAYNNNNRTG 2 cut(s) 131, 1572
SmlI CTYRAG 2 cut(s) 111, 758
SmoI CTYRAG 2 cut(s) 111, 758
Sse9I AATT 6 cut(s) 382, 462, 790, 831, 943, 1370
SseBI AGGCCT 1 cut(s) 703
SsiI CCGC 2 cut(s) 295, 887
SspI AATATT 1 cut(s) 1068
SspMI CTAG 5 cut(s) 32, 717, 1013, 1250, 1440
StuI AGGCCT 1 cut(s) 703
StyD4I CCNGG 3 cut(s) 936, 1333, 1413
StyI CCWWGG 1 cut(s) 1046
TaaI ACNGT 8 cut(s) 143, 217, 447, 496, 569, 872, 1166, 1387
TaiI ACGT 1 cut(s) 100
TaqI TCGA 5 cut(s) 264, 289, 600, 782, 1389
TasI AATT 6 cut(s) 382, 462, 790, 831, 943, 1370
TatI WGTACW 1 cut(s) 1227
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 2 cut(s) 618, 661
Tru1I TTAA 6 cut(s) 93, 101, 327, 564, 942, 1191
Tru9I TTAA 6 cut(s) 93, 101, 327, 564, 942, 1191
TscAI CASTG 3 cut(s) 410, 1115, 1390
TseFI GTSAC 1 cut(s) 959
TseI GCWGC 2 cut(s) 171, 764
Tsp45I GTSAC 1 cut(s) 959
TspDTI ATGAA 5 cut(s) 36, 149, 456, 572, 1535
TspRI CASTG 3 cut(s) 410, 1115, 1390
VneI GTGCAC 1 cut(s) 1426
VpaK11BI GGWCC 3 cut(s) 190, 283, 1171
XapI RAATTY 1 cut(s) 831
XceI RCATGY 1 cut(s) 1093
XmiI GTMKAC 1 cut(s) 1389
XspI CTAG 5 cut(s) 32, 717, 1013, 1250, 1440
Zsp2I ATGCAT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.