FvH4_3g11180

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014603
Physical Location & Seq
Reverse (-)
6585355 .. 6587303
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11180.t1

Sequence Viewer

Length: 1611 bp
ATGGCTTCCATTACTGCAAATTTCATCATCCTACTCTTGTCGATTTCATTCTCAGTGTCTGCAACTCTATCTGCATCAATTATAGATGACCTAAAAAGTTTAAAACCACCACAAGATTTCAACTCCACAATCATGAAAAACTGTCTTCAAAACCCATCTCTCAGATATTGCAGTACTTCTACTCCAATGGACCTTGATGAGATTTTCAAATCCACCATTGTTGCAAGCCATCTCTGCAACGAGTCCAAGAACCCGAACTGCGTCGATTCGTTTCCCAAAATAGACCTTCGAAGCCGCCCAAACATTGCACCACTCTACTTGTCATTCAACTTCTTCTGGAAGTATTGTCCTTTAAGCATCTTATCTATTGACCTGTCCAATACCTCTTTGAAGAGCAATTTTCCCATTGATGTTCTTCACTGCACCCAAATCCAATCTCTTGATATGAACCATAATGAACTGTATGGCGATGTGCCAACAGAGAACTTATCTGCCCTCACAAATCTCACAGTTCTGAATCTGTCATATAATCACTTCTCAGAGAGTAAAATCTCTGATATCCTGTTCTTCAAAAAGTTTAACTCTTCGAGTTTTCTTCATTCGGGTCTCATTCCAGATCACAAAAAGTTCAAAATCAAGGCTATAGTCTTCTTGGTTAGTTTTCCTCTCTTTGTGATTCTGAAGGTATGTTGCTTGTGGTGGCTCTGTTTCCGCAGGCCTGATTTCCTCCCAAGAGTGTTTCGAAGAAAGCACAGGTTTACACCAGCAACGCTCAAGGCAGCAACAAATGGATTTTCGAGAAACAATTTGATGGGGAAGAGTGCATCAGTTGATATTTATAAAGGAATTTTAAGAGATGGTACTGATGTTAGGATTGAGGTTTACGGTAGTGACAACCACCCGCAAGTGATTGAAGAATGCAAGGTTCTTGTTCAGCTATGCCACAAGAACCTGGCTAATTTACTGGGTTGGTGTGATAACCGAAAGTTGAGGGCCATTGTTACTGAATGGATGGAAGGAGAGAACCTAGAGAGCTGGCTCATGGGATCAAGTTTTACACCATGGAACTACAGGTTGAGAATATTGATGGGGGTTGTGGAAGGCATGTTTTATCTACAGGAGCAGTGGCCTGAAGTTGGGTATGATCTGAGGACAAGTAGTATCATGTTGTGCAACTACAATCTAGACCCAAAGATTTCAAGGTTTAAAGTTGGAAATCAAAGCACTAGCAGGAGAAGGATGTACAGGTTTGGATTATTTCTGCTAGAGATGATGGTAAACAGGAGGCCACAAGAAGAGTTTGAGAGGGGCGAGGCTGGTTTTATAGAGTATATCAGAATGCATTATCCTGGAAATTTAGAGCAACTGATAGACCCAAAAATGGAACCGACTCGAAACACCATCGACCAAGCTAAACAGGCAATATCCCTGGGGCTTATGTGCACAGAAGTATCAAGCAACCGGCAACCAAGCTTAGAGCAGGTGTATAATATTGTCAGTAGAGCCTACCAGTCTTGCAGAGTTTTAGCATCCCATCATAATCATAATCATTATCATAGAAGAATTCATGCAGACAGAGGAAAAGGACACAGGCATGTGCAATCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase_Tyr

Protein Analysis

537

Amino Acids

61.87

Weight (kDa)

9.08

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 270 - 402 1.9e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 297 - 412 1.8e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20790
fragaria_vesca FvH4_3g11180
malus_domestica MD05G1265400.v1.1 MD10G1243400.v1.1
prunus_persica Prupe.4G100500_v2.0.a1
pyrus_communis pycom05g24940 pycom10g20360
rosa_chinensis RchiOBHm_Chr5g0018091
rosa_laevigata RLG00000032339
rosa_multiflora Rmu_sc0010280.1_g000019
rosa_roxburghii Rroxscaffold_1G00059530
rosa_rugosa Rorug05G0040400
rosa_samantha Rh5AG133100 Rh5BG131700 Rh5CG143700 Rh5DG133400
rosa_wichuraiana Rw5G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AarI CACCTGC 1 cut(s) 1471
Acc36I ACCTGC 1 cut(s) 1471
AciI CCGC 3 cut(s) 295, 712, 902
AclWI GGATC 1 cut(s) 1054
AcsI RAATTY 4 cut(s) 19, 846, 1354, 1563
AcuI CTGAAG 2 cut(s) 701, 1152
AfaI GTAC 3 cut(s) 175, 862, 1244
AfiI CCNNNNNNNGG 2 cut(s) 1136, 1381
AgsI TTSAA 9 cut(s) 121, 149, 208, 328, 391, 571, 631, 914, 1200
AjnI CCWGG 3 cut(s) 951, 1348, 1428
AluBI AGCT 4 cut(s) 937, 1035, 1412, 1473
AluI AGCT 4 cut(s) 937, 1035, 1412, 1473
Alw21I GWGCWC 1 cut(s) 1445
Alw26I GTCTC 1 cut(s) 611
Alw44I GTGCAC 1 cut(s) 1441
AlwI GGATC 1 cut(s) 1054
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 4 cut(s) 716, 993, 1127, 1286
ApaLI GTGCAC 1 cut(s) 1441
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 4 cut(s) 19, 846, 1354, 1563
AspS9I GGNCC 2 cut(s) 190, 993
AsuII TTCGAA 2 cut(s) 289, 742
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 1445
BaeI ACNNNNGTAYC 4 cut(s) 852, 885, 1434, 1467
BbsI GAAGAC 2 cut(s) 137, 640
Bbv12I GWGCWC 1 cut(s) 1445
BbvI GCAGC 1 cut(s) 791
BccI CCATC 9 cut(s) 163, 237, 805, 851, 1006, 1081, 1267, 1409, 1542
BciT130I CCWGG 3 cut(s) 953, 1350, 1430
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 4 cut(s) 1028, 1184, 1227, 1265
BfmI CTRYAG 3 cut(s) 642, 1069, 1115
BfuAI ACCTGC 1 cut(s) 1471
BisI GCNGC 2 cut(s) 295, 780
BlsI GCNGC 2 cut(s) 296, 781
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 3 cut(s) 953, 1350, 1430
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 190, 993
BmiI GGNNCC 1 cut(s) 1386
BmrFI CCNGG 3 cut(s) 953, 1350, 1430
BmrI ACTGGG 1 cut(s) 974
BmsI GCATC 4 cut(s) 83, 366, 833, 1538
BmuI ACTGGG 1 cut(s) 974
BpiI GAAGAC 2 cut(s) 137, 640
Bpu14I TTCGAA 2 cut(s) 289, 742
BpuEI CTTGAG 1 cut(s) 758
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 3 cut(s) 1061, 1428, 1429
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 1136, 1381
Bse118I RCCGGY 1 cut(s) 1461
Bse1I ACTGG 2 cut(s) 969, 1510
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 3 cut(s) 953, 1350, 1430
BseDI CCNNGG 3 cut(s) 1061, 1428, 1429
BseGI GGATG 4 cut(s) 27, 1017, 1245, 1529
BseLI CCNNNNNNNGG 2 cut(s) 1136, 1381
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 4 cut(s) 66, 175, 552, 1139
BseNI ACTGG 2 cut(s) 969, 1510
BseSI GKGCMC 1 cut(s) 1445
BseXI GCAGC 1 cut(s) 791
BsgI GTGCAG 1 cut(s) 406
BshFI GGCC 4 cut(s) 718, 995, 1129, 1288
BsiHKAI GWGCWC 1 cut(s) 1445
BsiSI CCGG 1 cut(s) 1462
BslI CCNNNNNNNGG 2 cut(s) 1136, 1381
BsmAI GTCTC 1 cut(s) 611
BsmI GAATGC 2 cut(s) 923, 1344
BsnI GGCC 4 cut(s) 718, 995, 1129, 1288
Bso31I GGTCTC 1 cut(s) 611
Bsp119I TTCGAA 2 cut(s) 289, 742
Bsp1286I GDGCHC 1 cut(s) 1445
Bsp1407I TGTACA 1 cut(s) 1242
Bsp143I GATC 3 cut(s) 616, 1046, 1144
Bsp19I CCATGG 1 cut(s) 1061
BspACI CCGC 3 cut(s) 295, 712, 902
BspANI GGCC 4 cut(s) 718, 995, 1129, 1288
BspCNI CTCAG 4 cut(s) 65, 174, 551, 1140
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 1386
BspMI ACCTGC 1 cut(s) 1471
BspPI GGATC 1 cut(s) 1054
BspQI GCTCTTC 1 cut(s) 386
BspT104I TTCGAA 2 cut(s) 289, 742
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 1461
BsrGI TGTACA 1 cut(s) 1242
BsrI ACTGG 2 cut(s) 969, 1510
BssAI RCCGGY 1 cut(s) 1461
BssECI CCNNGG 3 cut(s) 1061, 1428, 1429
BssMI GATC 3 cut(s) 616, 1046, 1144
BssT1I CCWWGG 1 cut(s) 1061
Bst2UI CCWGG 3 cut(s) 953, 1350, 1430
Bst4CI ACNGT 4 cut(s) 143, 462, 511, 887
Bst6I CTCTTC 4 cut(s) 386, 589, 812, 1290
BstAUI TGTACA 1 cut(s) 1242
BstBI TTCGAA 2 cut(s) 289, 742
BstC8I GCNNGC 3 cut(s) 226, 716, 1037
BstDEI CTNAG 5 cut(s) 52, 161, 538, 1148, 1474
BstDSI CCRYGG 1 cut(s) 1061
BstF5I GGATG 4 cut(s) 27, 1017, 1245, 1529
BstKTI GATC 3 cut(s) 619, 1049, 1147
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 3 cut(s) 616, 1046, 1144
BstMWI GCNNNNNNNGC 2 cut(s) 234, 1418
BstNI CCWGG 3 cut(s) 953, 1350, 1430
BstNSI RCATGY 2 cut(s) 1108, 1598
BstSCI CCNGG 3 cut(s) 951, 1348, 1428
BstSFI CTRYAG 3 cut(s) 642, 1069, 1115
BstSLI GKGCMC 1 cut(s) 1445
BstV1I GCAGC 1 cut(s) 791
BstV2I GAAGAC 2 cut(s) 137, 640
BsuRI GGCC 4 cut(s) 718, 995, 1129, 1288
BtgI CCRYGG 1 cut(s) 1061
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 4 cut(s) 27, 1017, 1245, 1529
BtsI GCAGTG 2 cut(s) 418, 1130
BtsIMutI CAGTG 3 cut(s) 60, 418, 1130
BveI ACCTGC 1 cut(s) 1471
Cac8I GCNNGC 3 cut(s) 226, 716, 1037
CaiI CAGNNNCTG 1 cut(s) 59
CciI TCATGA 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 1461
Cfr13I GGNCC 2 cut(s) 190, 993
CseI GACGC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 174, 861, 1243
CspCI CAANNNNNGTGG 4 cut(s) 202, 237, 300, 335
CviAII CATG 7 cut(s) 133, 1042, 1062, 1105, 1165, 1568, 1595
CviQI GTAC 3 cut(s) 174, 861, 1243
DdeI CTNAG 5 cut(s) 52, 161, 538, 1148, 1474
DpnI GATC 3 cut(s) 618, 1048, 1146
DpnII GATC 3 cut(s) 616, 1046, 1144
DraI TTTAAA 2 cut(s) 102, 1207
Eam1104I CTCTTC 4 cut(s) 386, 589, 812, 1290
EarI CTCTTC 4 cut(s) 386, 589, 812, 1290
Eco130I CCWWGG 1 cut(s) 1061
Eco147I AGGCCT 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 611
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 701, 1152
EcoRI GAATTC 1 cut(s) 1563
EcoRII CCWGG 3 cut(s) 951, 1348, 1428
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 1061
EcoT22I ATGCAT 1 cut(s) 1344
ErhI CCWWGG 1 cut(s) 1061
FaeI CATG 7 cut(s) 136, 1045, 1065, 1108, 1168, 1571, 1598
FatI CATG 7 cut(s) 132, 1041, 1061, 1104, 1164, 1567, 1594
FauI CCCGC 1 cut(s) 909
Fnu4HI GCNGC 2 cut(s) 295, 780
FokI GGATG 4 cut(s) 14, 1024, 1252, 1516
Fsp4HI GCNGC 2 cut(s) 295, 780
FspBI CTAG 4 cut(s) 1028, 1184, 1227, 1265
GluI GCNGC 2 cut(s) 295, 780
HaeIII GGCC 4 cut(s) 718, 995, 1129, 1288
HapII CCGG 1 cut(s) 1462
HgaI GACGC 1 cut(s) 250
Hin1II CATG 7 cut(s) 136, 1045, 1065, 1108, 1168, 1571, 1598
HindIII AAGCTT 1 cut(s) 1471
HinfI GANTC 5 cut(s) 242, 266, 517, 676, 1390
HpaII CCGG 1 cut(s) 1462
Hpy166II GTNNAC 4 cut(s) 759, 883, 1279, 1443
Hpy188I TCNGA 7 cut(s) 164, 516, 541, 556, 681, 1149, 1337
Hpy188III TCNNGA 7 cut(s) 133, 337, 440, 614, 798, 1184, 1605
Hpy8I GTNNAC 4 cut(s) 759, 883, 1279, 1443
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 5 cut(s) 296, 676, 1010, 1094, 1230
HpyCH4III ACNGT 4 cut(s) 143, 462, 511, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 1418
HpyF3I CTNAG 5 cut(s) 52, 161, 538, 1148, 1474
Hsp92II CATG 7 cut(s) 136, 1045, 1065, 1108, 1168, 1571, 1598
Kzo9I GATC 3 cut(s) 616, 1046, 1144
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 1120
Lsp1109I GCAGC 1 cut(s) 791
LweI GCATC 4 cut(s) 83, 366, 833, 1538
MaeI CTAG 4 cut(s) 1028, 1184, 1227, 1265
MaeIII GTNAC 2 cut(s) 890, 1000
MalI GATC 3 cut(s) 618, 1048, 1146
MboI GATC 3 cut(s) 616, 1046, 1144
MhlI GDGCHC 1 cut(s) 1445
MluCI AATT 8 cut(s) 19, 78, 397, 805, 846, 958, 1354, 1563
MlyI GAGTC 2 cut(s) 251, 1384
MmeI TCCRAC 1 cut(s) 1192
Mph1103I ATGCAT 1 cut(s) 1344
MseI TTAA 5 cut(s) 101, 353, 579, 851, 1206
MslI CAYNNNNRTG 2 cut(s) 131, 1593
MspI CCGG 1 cut(s) 1462
MspR9I CCNGG 3 cut(s) 953, 1350, 1430
Mva1269I GAATGC 2 cut(s) 923, 1344
MvaI CCWGG 3 cut(s) 953, 1350, 1430
MwoI GCNNNNNNNGC 2 cut(s) 234, 1418
NcoI CCATGG 1 cut(s) 1061
NdeII GATC 3 cut(s) 616, 1046, 1144
NlaIII CATG 7 cut(s) 136, 1045, 1065, 1108, 1168, 1571, 1598
NlaIV GGNNCC 1 cut(s) 1386
NmuCI GTSAC 1 cut(s) 890
NsiI ATGCAT 1 cut(s) 1344
NspI RCATGY 2 cut(s) 1108, 1598
NspV TTCGAA 2 cut(s) 289, 742
PagI TCATGA 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 1471
PasI CCCWGGG 1 cut(s) 1429
PceI AGGCCT 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 386
PctI GAATGC 2 cut(s) 923, 1344
PfeI GAWTC 3 cut(s) 266, 517, 676
PfoI TCCNGGA 1 cut(s) 1348
PkrI GCNGC 2 cut(s) 296, 781
PleI GAGTC 2 cut(s) 250, 1384
PpsI GAGTC 2 cut(s) 250, 1384
PsiI TTATAA 1 cut(s) 840
Psp6I CCWGG 3 cut(s) 951, 1348, 1428
PspGI CCWGG 3 cut(s) 951, 1348, 1428
PspN4I GGNNCC 1 cut(s) 1386
PspPI GGNCC 2 cut(s) 190, 993
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 3 cut(s) 175, 862, 1244
RsaNI GTAC 3 cut(s) 174, 861, 1243
RseI CAYNNNNRTG 2 cut(s) 131, 1593
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 5 cut(s) 101, 353, 579, 851, 1206
SatI GCNGC 2 cut(s) 295, 780
Sau3AI GATC 3 cut(s) 616, 1046, 1144
Sau96I GGNCC 2 cut(s) 190, 993
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 2 cut(s) 251, 1384
ScrFI CCNGG 3 cut(s) 953, 1350, 1430
SduI GDGCHC 1 cut(s) 1445
SfaNI GCATC 4 cut(s) 83, 366, 833, 1538
SfcI CTRYAG 3 cut(s) 642, 1069, 1115
SfuI TTCGAA 2 cut(s) 289, 742
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 2 cut(s) 131, 1593
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 8 cut(s) 19, 78, 397, 805, 846, 958, 1354, 1563
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 3 cut(s) 295, 712, 902
SspI AATATT 2 cut(s) 1083, 1492
SspMI CTAG 4 cut(s) 1028, 1184, 1227, 1265
StuI AGGCCT 1 cut(s) 718
StyD4I CCNGG 3 cut(s) 951, 1348, 1428
StyI CCWWGG 1 cut(s) 1061
TaaI ACNGT 4 cut(s) 143, 462, 511, 887
TaqI TCGA 8 cut(s) 41, 264, 289, 587, 742, 797, 1393, 1404
TasI AATT 8 cut(s) 19, 78, 397, 805, 846, 958, 1354, 1563
TatI WGTACW 2 cut(s) 173, 1242
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 3 cut(s) 266, 517, 676
Tru1I TTAA 5 cut(s) 101, 353, 579, 851, 1206
Tru9I TTAA 5 cut(s) 101, 353, 579, 851, 1206
TscAI CASTG 3 cut(s) 60, 425, 1130
TseFI GTSAC 1 cut(s) 890
TseI GCWGC 1 cut(s) 779
Tsp45I GTSAC 1 cut(s) 890
TspDTI ATGAA 7 cut(s) 13, 36, 149, 461, 471, 587, 1556
TspRI CASTG 3 cut(s) 60, 425, 1130
VneI GTGCAC 1 cut(s) 1441
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 4 cut(s) 19, 846, 1354, 1563
XbaI TCTAGA 1 cut(s) 1183
XceI RCATGY 2 cut(s) 1108, 1598
XspI CTAG 4 cut(s) 1028, 1184, 1227, 1265
ZrmI AGTACT 1 cut(s) 175
Zsp2I ATGCAT 1 cut(s) 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.