Rorug05G0040400

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014603
Physical Location & Seq
Forward (+)
3491314 .. 3492780
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0040400.1

Sequence Viewer

Length: 783 bp
ATGGTGAGGAGTAGTACTCAGCAGTGTGATGAGAAGAGACCTTTGAAGAAAGGGCCATGGAGTCCTGATGAGGATCACAAGTTGATAGCTTACATTCAAAGATATGGTATTTGGAATTGGAGTCAGATGCCTAAACCTGCAGGTCTGGCAAGGTCTGGGAAAAGTTGTAGACTTCGTTGGATGAATTACTTGAGGCCGGATATTAAGCGCGGAAACTTCAGCAAGGAAGAAGAGGAGACCATAATCAAGTTGCAACAGAATATGGGAAACAGATGGTCTGTGATTGCAGCAAAACTTCCTGGAAGAACTGACAATGAAATCAAGAATTACTGGCACACCCACTTGAAAAGGCGCCTCAACAATGACAAAGCCAAAAGCGTCGAGAATACTTCATCTGAAACTGAAACCTTTCTTCTTGATAAGGAAGCTCCAAAGGCATCACAGTTGGAAACTTCTAGAGAAAACTTCTCTTCATCAAGTTCTGGTATTGCTGATGAAGTTTATCACAAACCCCAGATTCCAGAACAGCAGAGCATCTGTGAAACATTTGGTGAACTCCAAAGTTTGTGGACAGATTCTCAAGTGACATCAACAGCGGTGAAAAATTCTGAGGCTATGTTTACAGATTCTGCTGGATTTACATTATCAAGTGATGCTGATCAAGTGTGGCTGCAGCAAGAGCCCATATTTCCATGTGGTTCCTATAGTGATGATGCTCATGTTCCCATGAGTGACTATTGGGTCAATTTATCAGTACAGTCTGATGAAACAAATGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase_Tyr

Protein Analysis

260

Amino Acids

29.72

Weight (kDa)

5.64

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 80 5e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 115 4.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 123 6.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20790
fragaria_vesca FvH4_3g11180
malus_domestica MD05G1265400.v1.1 MD10G1243400.v1.1
prunus_persica Prupe.4G100500_v2.0.a1
pyrus_communis pycom05g24940 pycom10g20360
rosa_chinensis RchiOBHm_Chr5g0018091
rosa_laevigata RLG00000032339
rosa_multiflora Rmu_sc0010280.1_g000019
rosa_roxburghii Rroxscaffold_1G00059530
rosa_rugosa Rorug05G0040400
rosa_samantha Rh5AG133100 Rh5BG131700 Rh5CG143700 Rh5DG133400
rosa_wichuraiana Rw5G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 740
Acc36I ACCTGC 2 cut(s) 131, 145
AccB1I GGYRCC 1 cut(s) 351
AccI GTMKAC 1 cut(s) 169
AccII CGCG 1 cut(s) 210
AciI CCGC 2 cut(s) 210, 596
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 352
AfaI GTAC 2 cut(s) 16, 756
AgsI TTSAA 3 cut(s) 46, 98, 346
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 89, 428
AluI AGCT 2 cut(s) 89, 428
Alw26I GTCTC 2 cut(s) 31, 230
AlwI GGATC 1 cut(s) 81
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 2 cut(s) 53, 194
ApeKI GCWGC 3 cut(s) 287, 670, 673
ApoI RAATTY 1 cut(s) 604
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 2 cut(s) 210, 354
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 16, 563, 610
BanI GGYRCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 299, 657, 685
BccI CCATC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 300
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 31, 230
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 3 cut(s) 138, 671, 703
BfoI RGCGCY 1 cut(s) 355
BfuAI ACCTGC 2 cut(s) 131, 145
BisI GCNGC 3 cut(s) 288, 671, 674
BlsI GCNGC 3 cut(s) 289, 672, 675
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 353, 700
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 5 cut(s) 117, 446, 543, 643, 703
BplI GAGNNNNNCTC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 211, 564
BsaBI GATNNNNATC 2 cut(s) 72, 657
BsaHI GRCGYC 1 cut(s) 352
BsaI GGTCTC 2 cut(s) 31, 230
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 335
Bse8I GATNNNNATC 2 cut(s) 72, 657
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 2 cut(s) 72, 657
BseMII CTCAG 2 cut(s) 32, 600
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 22, 248
BseXI GCAGC 3 cut(s) 299, 657, 685
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 55, 196
BshNI GGYRCC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 31, 230
BsnI GGCC 2 cut(s) 55, 196
Bso31I GGTCTC 2 cut(s) 31, 230
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 2 cut(s) 73, 658
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 210, 596
BspANI GGCC 2 cut(s) 55, 196
BspCNI CTCAG 2 cut(s) 31, 601
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 353, 700
BspMAI CTGCAG 2 cut(s) 142, 675
BspMI ACCTGC 2 cut(s) 131, 145
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 351
BspTNI GGTCTC 2 cut(s) 31, 230
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 73, 658
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 444, 759
Bst6I CTCTTC 3 cut(s) 29, 225, 475
BstACI GRCGYC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 18, 609
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 210, 354
BstKTI GATC 2 cut(s) 76, 661
BstMAI GTCTC 2 cut(s) 31, 230
BstMBI GATC 2 cut(s) 73, 658
BstMWI GCNNNNNNNGC 3 cut(s) 146, 434, 679
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 3 cut(s) 138, 671, 703
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 299, 657, 685
BsuRI GGCC 2 cut(s) 55, 196
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 2 cut(s) 131, 145
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 2 cut(s) 210, 354
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 15, 755
CspCI CAANNNNNGTGG 2 cut(s) 548, 583
CviAII CATG 4 cut(s) 57, 693, 719, 727
CviJI RGCY 8 cut(s) 55, 89, 196, 371, 428, 614, 670, 682
CviKI_1 RGCY 8 cut(s) 55, 89, 196, 371, 428, 614, 670, 682
CviQI GTAC 2 cut(s) 15, 755
DdeI CTNAG 2 cut(s) 18, 609
DinI GGCGCC 1 cut(s) 353
DpnI GATC 2 cut(s) 75, 660
DpnII GATC 2 cut(s) 73, 658
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
Eam1104I CTCTTC 3 cut(s) 29, 225, 475
EarI CTCTTC 3 cut(s) 29, 225, 475
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 2 cut(s) 31, 230
Eco57I CTGAAG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 684
EgeI GGCGCC 1 cut(s) 353
EheI GGCGCC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 4 cut(s) 60, 696, 722, 730
FatI CATG 4 cut(s) 56, 692, 718, 726
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 288, 671, 674
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 3 cut(s) 288, 671, 674
FspBI CTAG 1 cut(s) 456
GlaI GCGC 2 cut(s) 209, 353
GluI GCNGC 3 cut(s) 288, 671, 674
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 55, 196
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 367
HhaI GCGC 2 cut(s) 210, 354
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 4 cut(s) 60, 696, 722, 730
Hin6I GCGC 2 cut(s) 208, 352
HinP1I GCGC 2 cut(s) 208, 352
HinfI GANTC 5 cut(s) 61, 121, 517, 575, 626
HpaII CCGG 1 cut(s) 197
HphI GGTGA 3 cut(s) 16, 563, 610
Hpy166II GTNNAC 4 cut(s) 170, 554, 570, 621
Hpy188I TCNGA 4 cut(s) 126, 397, 610, 763
Hpy188III TCNNGA 6 cut(s) 65, 322, 382, 416, 456, 521
Hpy8I GTNNAC 4 cut(s) 170, 554, 570, 621
Hpy99I CGWCG 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 444, 759
HpyCH4V TGCA 4 cut(s) 140, 253, 287, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 434, 679
HpyF3I CTNAG 2 cut(s) 18, 609
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 4 cut(s) 60, 696, 722, 730
HspAI GCGC 2 cut(s) 208, 352
KasI GGCGCC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 2 cut(s) 73, 658
LmnI GCTCC 1 cut(s) 433
Lsp1109I GCAGC 3 cut(s) 299, 657, 685
LweI GCATC 5 cut(s) 117, 446, 543, 643, 703
MaeI CTAG 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 583, 731
MalI GATC 2 cut(s) 75, 660
MboI GATC 2 cut(s) 73, 658
MboII GAAGA 7 cut(s) 46, 58, 239, 242, 315, 404, 462
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 5 cut(s) 115, 184, 325, 604, 745
Mly113I GGCGCC 1 cut(s) 352
MlyI GAGTC 2 cut(s) 70, 130
MmeI TCCRAC 2 cut(s) 158, 426
MnlI CCTC 5 cut(s) 64, 186, 226, 365, 604
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 146, 434, 679
NarI GGCGCC 1 cut(s) 352
NcoI CCATGG 1 cut(s) 56
NdeII GATC 2 cut(s) 73, 658
NlaIII CATG 4 cut(s) 60, 696, 722, 730
NlaIV GGNNCC 2 cut(s) 353, 700
NmuCI GTSAC 2 cut(s) 583, 731
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 3 cut(s) 517, 575, 626
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 3 cut(s) 289, 672, 675
PleI GAGTC 2 cut(s) 69, 129
PluTI GGCGCC 1 cut(s) 355
PpsI GAGTC 2 cut(s) 69, 129
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 353, 700
PspPI GGNCC 1 cut(s) 53
PstI CTGCAG 2 cut(s) 142, 675
PstNI CAGNNNCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 16, 756
RsaNI GTAC 2 cut(s) 15, 755
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 288, 671, 674
Sau3AI GATC 2 cut(s) 73, 658
Sau96I GGNCC 1 cut(s) 53
SbfI CCTGCAGG 1 cut(s) 142
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 2 cut(s) 70, 130
ScrFI CCNGG 1 cut(s) 300
SdaI CCTGCAGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 684
SetI ASST 7 cut(s) 43, 91, 139, 145, 155, 410, 430
SfaNI GCATC 5 cut(s) 117, 446, 543, 643, 703
SfcI CTRYAG 3 cut(s) 138, 671, 703
SfoI GGCGCC 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 190, 579
SmoI CTYRAG 2 cut(s) 190, 579
Sse8387I CCTGCAGG 1 cut(s) 142
Sse9I AATT 5 cut(s) 115, 184, 325, 604, 745
SsiI CCGC 2 cut(s) 210, 596
SspDI GGCGCC 1 cut(s) 351
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 444, 759
TaqI TCGA 1 cut(s) 381
TasI AATT 5 cut(s) 115, 184, 325, 604, 745
TatI WGTACW 2 cut(s) 14, 754
TfiI GAWTC 3 cut(s) 517, 575, 626
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 2 cut(s) 583, 731
TseI GCWGC 3 cut(s) 287, 670, 673
Tsp45I GTSAC 2 cut(s) 583, 731
TspDTI ATGAA 6 cut(s) 197, 330, 381, 462, 510, 780
TspRI CASTG 1 cut(s) 29
XapI RAATTY 1 cut(s) 604
XbaI TCTAGA 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.