Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013332

Physical Location & Seq

Genomic Coordinates Reverse (-)

11292192 .. 11294014

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACTAAGCTCTTCACCAAAAAGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCTCGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCTGCCAAAATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTATGGAGCGCTTGATTCCTTCATTGCTTGGGAATTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATACTTGAAGATGAAAAAGAATGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAAGGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAATCGCCTTGACGAAGCTGAGGAATTGTGGAACAAATTGTTCATGGAACATTTAGAAGGAACTCCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAGCTCTTCGAGGTCTTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAATGTTGCGATTGTGTCTATGGTTGGAAAAGTGTTTGTGAAACTAGAGATGAAGGATAAGTACGAGAAACTGATGAAGAAATATCCTCCACCACAGTGGGAGTTTAGATACATCAAAGGAAGACGTGTTAAGGTCAAGGCAAAGCAGCTGAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGACGAAGATAAGATTGACAATGAGATTGAGAGTGAAGAAGAAGATGGTGAGGATCTCAGTGAAGAGGAAGAAGATGAAAAAGAACTTTTGGGTGGAAGTCAAGGACAGATTACTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

307

Amino Acids

35.48

Weight (kDa)

6.43

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21190
fragaria_vesca	FvH4_7g30430
malus_domestica	MD01G1209900.v1.1 MD07G1280000.v1.1
prunus_persica	Prupe.2G302200_v2.0.a1
pyrus_communis	pycom01g22040 pycom07g25460
rosa_chinensis	RchiOBHm_Chr1g0378571
rosa_laevigata	RLG00000026422
rosa_multiflora	Rmu_sc0002395.1_g000007 Rmu_sc0008712.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280380
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431100 Rh1BG389400 Rh1CG402700 Rh1DG420600
rosa_wichuraiana	Rw1G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	831
AfaI	GTAC	1 cut(s)	647
AfeI	AGCGCT	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	709
AgsI	TTSAA	3 cut(s)	41, 305, 496
AjiI	CACGTC	1 cut(s)	710
AleI	CACNNNNGTG	1 cut(s)	679
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	8 cut(s)	9, 64, 173, 434, 541, 571, 733, 742
AluI	AGCT	8 cut(s)	9, 64, 173, 434, 541, 571, 733, 742
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	831
Aor51HI	AGCGCT	1 cut(s)	234
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	3 cut(s)	173, 730, 768
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	4 cut(s)	61, 349, 764, 830
AvaII	GGWCC	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	712
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	160, 742, 780
BccI	CCATC	1 cut(s)	809
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	3 cut(s)	483, 629, 888
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	4 cut(s)	102, 174, 731, 769
BlpI	GCTNAGC	2 cut(s)	5, 743
BlsI	GCNGC	4 cut(s)	103, 175, 732, 770
Bme18I	GGWCC	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	710
BmgT120I	GGNCC	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	891
BoxI	GACNNNNGTC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	712
Bpu10I	CCTNAGC	1 cut(s)	435
Bpu1102I	GCTNAGC	2 cut(s)	5, 743
BpuEI	CTTGAG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	119, 364
Bse1I	ACTGG	1 cut(s)	897
Bse3DI	GCAATG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	119, 364
BseGI	GGATG	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	344, 426, 841
BseNI	ACTGG	1 cut(s)	897
BseRI	GAGGAG	2 cut(s)	117, 581
BseXI	GCAGC	3 cut(s)	160, 742, 780
BshFI	GGCC	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	363
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	504, 823, 904
Bsp1720I	GCTNAGC	2 cut(s)	5, 743
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	3 cut(s)	345, 427, 840
BspHI	TCATGA	1 cut(s)	920
BspPI	GGATC	1 cut(s)	831
BspQI	GCTCTTC	2 cut(s)	71, 548
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	897
BssECI	CCNNGG	2 cut(s)	119, 364
BssMI	GATC	3 cut(s)	504, 823, 904
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	681
Bst6I	CTCTTC	4 cut(s)	71, 143, 548, 828
BstDEI	CTNAG	6 cut(s)	5, 60, 353, 435, 743, 827
BstF5I	GGATG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	507, 826, 907
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	3 cut(s)	504, 823, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 739
BstPAI	GACNNNNGTC	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	160, 742, 780
BstV2I	GAAGAC	1 cut(s)	712
BstX2I	RGATCY	1 cut(s)	823
BstXI	CCANNNNNNTGG	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	710
BtsCI	GGATG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	686, 835
CciI	TCATGA	1 cut(s)	920
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	3 cut(s)	460, 562, 921
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	6 cut(s)	5, 60, 353, 435, 743, 827
DpnI	GATC	3 cut(s)	506, 825, 906
DpnII	GATC	3 cut(s)	504, 823, 904
Eam1104I	CTCTTC	4 cut(s)	71, 143, 548, 828
EarI	CTCTTC	4 cut(s)	71, 143, 548, 828
Eco130I	CCWWGG	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	110
Eco47III	AGCGCT	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	3 cut(s)	463, 565, 924
FatI	CATG	3 cut(s)	459, 561, 920
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	4 cut(s)	102, 174, 731, 769
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	4 cut(s)	102, 174, 731, 769
FspBI	CTAG	3 cut(s)	483, 629, 888
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	4 cut(s)	102, 174, 731, 769
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	463, 565, 924
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	3 cut(s)	50, 239, 914
HphI	GGTGA	4 cut(s)	61, 349, 764, 830
Hpy188III	TCNNGA	3 cut(s)	888, 902, 921
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	6 cut(s)	253, 280, 467, 631, 743, 749
HpyCH4III	ACNGT	1 cut(s)	681
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 739
HpyF3I	CTNAG	6 cut(s)	5, 60, 353, 435, 743, 827
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	3 cut(s)	463, 565, 924
HspAI	GCGC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	3 cut(s)	504, 823, 904
LguI	GCTCTTC	2 cut(s)	71, 548
LmnI	GCTCC	2 cut(s)	230, 568
LpnPI	CCDG	2 cut(s)	320, 910
Lsp1109I	GCAGC	3 cut(s)	160, 742, 780
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	3 cut(s)	483, 629, 888
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	3 cut(s)	506, 825, 906
MboI	GATC	3 cut(s)	504, 823, 904
MflI	RGATCY	1 cut(s)	823
MluCI	AATT	3 cut(s)	257, 440, 452
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	1 cut(s)	589
MseI	TTAA	4 cut(s)	213, 282, 714, 764
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	733
MwoI	GCNNNNNNNGC	2 cut(s)	538, 739
NdeII	GATC	3 cut(s)	504, 823, 904
NlaIII	CATG	3 cut(s)	463, 565, 924
NmuCI	GTSAC	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	679
PagI	TCATGA	1 cut(s)	920
PciSI	GCTCTTC	2 cut(s)	71, 548
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	50, 239
PkrI	GCNGC	4 cut(s)	103, 175, 732, 770
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
PshAI	GACNNNNGTC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	679
SapI	GCTCTTC	2 cut(s)	71, 548
SaqAI	TTAA	4 cut(s)	213, 282, 714, 764
SatI	GCNGC	4 cut(s)	102, 174, 731, 769
Sau3AI	GATC	3 cut(s)	504, 823, 904
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	908
SfaNI	GCATC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	257, 440, 452
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	3 cut(s)	483, 629, 888
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	681
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	2 cut(s)	206, 546
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	3 cut(s)	257, 440, 452
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	50, 239
Tru1I	TTAA	4 cut(s)	213, 282, 714, 764
Tru9I	TTAA	4 cut(s)	213, 282, 714, 764
TscAI	CASTG	2 cut(s)	686, 835
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	3 cut(s)	173, 730, 768
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	8 cut(s)	9, 235, 324, 448, 650, 674, 861, 909
TspRI	CASTG	2 cut(s)	686, 835
VpaK11BI	GGWCC	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	887
XspI	CTAG	3 cut(s)	483, 629, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.