Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013332

Physical Location & Seq

Genomic Coordinates Forward (+)

22158728 .. 22160631

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTTAGCTTGACGTACTCGCTGCCGGTCTTTACTCGGCGGCTGGAAATTACCGGAATCTCCCGCAGTAGAAATAGTGTGGTGGTATGTGGATTGAAGGGTCCAAGACCCAGATACCCAAGAGTGTGGAAATCCAATAAGAAGATTGGGACCATTTCCAAATCCCTCAAGCTTGTTGAGTGTATTAAGGGGTTGTCAAATGTGAAAGAGGAGGTTTATGGCGCGCTTGATTCTTTCATTGCTTGGGAGTTGGAATTTCCTTTGATTACAGTGAAGAAGGCTTTGAAGACTCTTGAGAATCAGAAAGACTATAAAAGGATTATTCAGGTAGCAAAATGGATGCTGAGCAAAGGTCAAGGAAGGACAATGGGGACCTATTTCACACTGTTGAATGCTTTAGCGGCAGATGGGAGACTTGAGGAAGCTGAAGAGCTTTGGACAAAGCTGTTCACGCAGTACTTGGACAGCATGCCTCGAATTTTCTTTGACAAAATGATTTCGATTTACTATGAGAAGGGCTTGCATGATAAGATGTTTGAGATATTTGCTGACATGGAGGAGCTTGGCATCAAACCAAATATGTCAATTGTTAACAAGGTTGGAGATGTCTTTCAGAAGCTAGGTATGATGGACAAGTACACTAAATTGAAGAAGAAATATCCGCCGCCAAGATGGGAGATTCGGTATATCAAAGGAAAGCGTGTTAGAATCCAAGCAAACAAGCAAGGCAATCTTGATGGTGATGTCAAAATGCTAAGTGAGGAGAAGGAAACAATCCACGGCTCGAATGAAGTGTTAAATGCTGACTCAAATCCAGATGAACAGACTGTTGAAGCTGAGGAAATGAACCAGATCTTGTGCAATTCACTCGATGAAGCTGATACAAGTTCAGATGAACTCAGGGTTGAACTAAAAGCTCTACGTGATCAGGGGTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

314

Amino Acids

36.02

Weight (kDa)

8.95

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21190
fragaria_vesca	FvH4_7g30430
malus_domestica	MD01G1209900.v1.1 MD07G1280000.v1.1
prunus_persica	Prupe.2G302200_v2.0.a1
pyrus_communis	pycom01g22040 pycom07g25460
rosa_chinensis	RchiOBHm_Chr1g0378571
rosa_laevigata	RLG00000026422
rosa_multiflora	Rmu_sc0002395.1_g000007 Rmu_sc0008712.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280380
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431100 Rh1BG389400 Rh1CG402700 Rh1DG420600
rosa_wichuraiana	Rw1G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	224
AciI	CCGC	5 cut(s)	40, 64, 401, 662, 665
AcsI	RAATTY	2 cut(s)	254, 477
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	3 cut(s)	17, 458, 638
AgsI	TTSAA	6 cut(s)	97, 286, 391, 649, 833, 908
Alw26I	GTCTC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	254, 477
AspLEI	GCGC	2 cut(s)	224, 226
AspS9I	GGNCC	3 cut(s)	101, 150, 372
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	101, 150, 372
BbsI	GAAGAC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	837
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	4 cut(s)	401, 622, 666, 731
BceAI	ACGGC	1 cut(s)	796
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BclI	TGATCA	1 cut(s)	925
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	620
BglII	AGATCT	1 cut(s)	852
BisI	GCNGC	4 cut(s)	23, 41, 402, 665
BlpI	GCTNAGC	2 cut(s)	5, 344
BlsI	GCNGC	4 cut(s)	24, 42, 403, 666
BmcAI	AGTACT	1 cut(s)	458
Bme18I	GGWCC	3 cut(s)	101, 150, 372
BmgT120I	GGNCC	3 cut(s)	101, 150, 372
BmiI	GGNNCC	3 cut(s)	102, 151, 373
BmsI	GCATC	2 cut(s)	330, 576
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	837
Bpu1102I	GCTNAGC	2 cut(s)	5, 344
BpuEI	CTTGAG	3 cut(s)	152, 314, 437
BsaAI	YACGTR	1 cut(s)	923
BsaJI	CCNNGG	1 cut(s)	778
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bse118I	RCCGGY	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	335, 828, 913
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	3 cut(s)	224, 572, 776
BseXI	GCAGC	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	26, 54
BslFI	GGGAC	2 cut(s)	163, 385
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	2 cut(s)	163, 385
BsmI	GAATGC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	852, 925
Bsp1720I	GCTNAGC	2 cut(s)	5, 344
BspACI	CCGC	5 cut(s)	40, 64, 401, 662, 665
BspCNI	CTCAG	3 cut(s)	336, 829, 912
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	102, 151, 373
BspQI	GCTCTTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	778
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	2 cut(s)	852, 925
Bst4CI	ACNGT	3 cut(s)	271, 387, 829
Bst6I	CTCTTC	1 cut(s)	423
BstBAI	YACGTR	1 cut(s)	923
BstC8I	GCNNGC	3 cut(s)	224, 470, 521
BstDEI	CTNAG	5 cut(s)	5, 344, 755, 837, 899
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	224, 226
BstKTI	GATC	2 cut(s)	855, 928
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	852, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 451
BstNSI	RCATGY	1 cut(s)	472
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	852
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	852
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	276, 383
Cac8I	GCNNGC	3 cut(s)	224, 470, 521
CfoI	GCGC	2 cut(s)	224, 226
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	101, 150, 372
Csp6I	GTAC	3 cut(s)	16, 457, 637
CviAII	CATG	3 cut(s)	469, 524, 553
CviQI	GTAC	3 cut(s)	16, 457, 637
DdeI	CTNAG	5 cut(s)	5, 344, 755, 837, 899
DpnI	GATC	2 cut(s)	854, 927
DpnII	GATC	2 cut(s)	852, 925
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	651
Eco47I	GGWCC	3 cut(s)	101, 150, 372
Eco57I	CTGAAG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	372
FaeI	CATG	3 cut(s)	472, 527, 556
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	2 cut(s)	163, 385
FatI	CATG	3 cut(s)	468, 523, 552
FauI	CCCGC	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	4 cut(s)	23, 41, 402, 665
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	4 cut(s)	23, 41, 402, 665
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	2 cut(s)	223, 225
GluI	GCNGC	4 cut(s)	23, 41, 402, 665
HapII	CCGG	2 cut(s)	26, 54
HhaI	GCGC	2 cut(s)	224, 226
Hin1II	CATG	3 cut(s)	472, 527, 556
Hin6I	GCGC	2 cut(s)	222, 224
HinP1I	GCGC	2 cut(s)	222, 224
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	7 cut(s)	57, 230, 289, 298, 679, 708, 806
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	2 cut(s)	26, 54
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	3 cut(s)	450, 592, 639
Hpy188I	TCNGA	3 cut(s)	303, 615, 892
Hpy188III	TCNNGA	3 cut(s)	293, 734, 815
Hpy8I	GTNNAC	3 cut(s)	450, 592, 639
HpyAV	CCTTC	5 cut(s)	91, 271, 354, 508, 760
HpyCH4III	ACNGT	3 cut(s)	271, 387, 829
HpyCH4IV	ACGT	2 cut(s)	14, 922
HpyCH4V	TGCA	3 cut(s)	523, 861, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 451
HpyF3I	CTNAG	5 cut(s)	5, 344, 755, 837, 899
HpySE526I	ACGT	2 cut(s)	14, 922
Hsp92II	CATG	3 cut(s)	472, 527, 556
HspAI	GCGC	2 cut(s)	222, 224
Ksp22I	TGATCA	1 cut(s)	925
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	852, 925
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	9 cut(s)	29, 39, 67, 124, 311, 828, 863, 886, 914
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	2 cut(s)	330, 576
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	2 cut(s)	14, 922
MalI	GATC	2 cut(s)	854, 927
MboI	GATC	2 cut(s)	852, 925
MboII	GAAGA	6 cut(s)	154, 286, 298, 440, 661, 664
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	852
MluCI	AATT	6 cut(s)	48, 254, 477, 585, 644, 862
MlyI	GAGTC	2 cut(s)	283, 800
MmeI	TCCRAC	2 cut(s)	231, 580
MnlI	CCTC	8 cut(s)	176, 202, 205, 412, 483, 550, 754, 832
MseI	TTAA	4 cut(s)	186, 591, 797, 940
MspI	CCGG	2 cut(s)	26, 54
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	397
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	401, 451
NdeII	GATC	2 cut(s)	852, 925
NlaIII	CATG	3 cut(s)	472, 527, 556
NlaIV	GGNNCC	3 cut(s)	102, 151, 373
NmeAIII	GCCGAG	1 cut(s)	16
NspI	RCATGY	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	472
PauI	GCGCGC	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	423
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	5 cut(s)	57, 230, 298, 679, 708
PkrI	GCNGC	4 cut(s)	24, 42, 403, 666
PleI	GAGTC	2 cut(s)	283, 800
PpsI	GAGTC	2 cut(s)	283, 800
Ppu21I	YACGTR	1 cut(s)	923
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
PspN4I	GGNNCC	3 cut(s)	102, 151, 373
PspPI	GGNCC	3 cut(s)	101, 150, 372
PspPPI	RGGWCCY	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	852
PteI	GCGCGC	1 cut(s)	222
RsaI	GTAC	3 cut(s)	17, 458, 638
RsaNI	GTAC	3 cut(s)	16, 457, 637
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	186, 591, 797, 940
SatI	GCNGC	4 cut(s)	23, 41, 402, 665
Sau3AI	GATC	2 cut(s)	852, 925
Sau96I	GGNCC	3 cut(s)	101, 150, 372
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	2 cut(s)	283, 800
SfaNI	GCATC	2 cut(s)	330, 576
SinI	GGWCC	3 cut(s)	101, 150, 372
SmlI	CTYRAG	3 cut(s)	167, 293, 416
SmoI	CTYRAG	3 cut(s)	167, 293, 416
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	6 cut(s)	48, 254, 477, 585, 644, 862
SsiI	CCGC	5 cut(s)	40, 64, 401, 662, 665
SspMI	CTAG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	271, 387, 829
TaiI	ACGT	2 cut(s)	17, 925
TaqI	TCGA	4 cut(s)	475, 500, 785, 870
TasI	AATT	6 cut(s)	48, 254, 477, 585, 644, 862
TatI	WGTACW	2 cut(s)	456, 636
TauI	GCSGC	3 cut(s)	43, 404, 667
TfiI	GAWTC	5 cut(s)	57, 230, 298, 679, 708
Tru1I	TTAA	4 cut(s)	186, 591, 797, 940
Tru9I	TTAA	4 cut(s)	186, 591, 797, 940
TscAI	CASTG	2 cut(s)	276, 390
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	6 cut(s)	226, 804, 834, 860, 888, 909
TspRI	CASTG	2 cut(s)	276, 390
VpaK11BI	GGWCC	3 cut(s)	101, 150, 372
XapI	RAATTY	2 cut(s)	254, 477
XceI	RCATGY	1 cut(s)	472
XspI	CTAG	1 cut(s)	620
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.