Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21190 |
| fragaria_vesca | FvH4_7g30430 |
| malus_domestica | MD01G1209900.v1.1 MD07G1280000.v1.1 |
| prunus_persica | Prupe.2G302200_v2.0.a1 |
| pyrus_communis | pycom01g22040 pycom07g25460 |
| rosa_chinensis | RchiOBHm_Chr1g0378571 |
| rosa_laevigata | RLG00000026422 |
| rosa_multiflora | Rmu_sc0002395.1_g000007 Rmu_sc0008712.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00280380 |
| rosa_rugosa | Rorug01G0409700 |
| rosa_samantha | Rh1AG431100 Rh1BG389400 Rh1CG402700 Rh1DG420600 |
| rosa_wichuraiana | Rw1G037770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 204, 507 |
| AciI | CCGC | 1 cut(s) | 505 |
| AcuI | CTGAAG | 1 cut(s) | 174 |
| AfaI | GTAC | 3 cut(s) | 185, 365, 413 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 511, 602 |
| AflIII | ACRYGT | 1 cut(s) | 427 |
| AgsI | TTSAA | 4 cut(s) | 146, 376, 560, 635 |
| AluBI | AGCT | 4 cut(s) | 152, 289, 346, 615 |
| AluI | AGCT | 4 cut(s) | 152, 289, 346, 615 |
| Alw21I | GWGCWC | 1 cut(s) | 291 |
| Ama87I | CYCGRG | 1 cut(s) | 290 |
| AoxI | GGCC | 1 cut(s) | 35 |
| ApeKI | GCWGC | 1 cut(s) | 470 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 173 |
| AspS9I | GGNCC | 2 cut(s) | 99, 295 |
| AsuHPI | GGTGA | 1 cut(s) | 56 |
| AvaI | CYCGRG | 1 cut(s) | 290 |
| AvaII | GGWCC | 2 cut(s) | 99, 295 |
| BanII | GRGCYC | 1 cut(s) | 291 |
| BbsI | GAAGAC | 1 cut(s) | 567 |
| Bbv12I | GWGCWC | 1 cut(s) | 291 |
| BbvI | GCAGC | 1 cut(s) | 457 |
| BccI | CCATC | 2 cut(s) | 22, 128 |
| BceAI | ACGGC | 1 cut(s) | 259 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 49, 83 |
| BfaI | CTAG | 2 cut(s) | 347, 356 |
| BisI | GCNGC | 1 cut(s) | 471 |
| BlpI | GCTNAGC | 1 cut(s) | 71 |
| BlsI | GCNGC | 1 cut(s) | 472 |
| BmcAI | AGTACT | 1 cut(s) | 185 |
| Bme18I | GGWCC | 2 cut(s) | 99, 295 |
| BmeT110I | CYCGRG | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 2 cut(s) | 99, 295 |
| BmiI | GGNNCC | 3 cut(s) | 100, 296, 528 |
| BmsI | GCATC | 2 cut(s) | 57, 457 |
| BpiI | GAAGAC | 1 cut(s) | 567 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 71 |
| BsaWI | WCCGGW | 2 cut(s) | 576, 595 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 395, 425 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 511, 602 |
| Bse1I | ACTGG | 1 cut(s) | 38 |
| BseGI | GGATG | 3 cut(s) | 14, 72, 139 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 511, 602 |
| BseMII | CTCAG | 3 cut(s) | 62, 597, 617 |
| BseNI | ACTGG | 1 cut(s) | 38 |
| BseRI | GAGGAG | 1 cut(s) | 299 |
| BseXI | GCAGC | 1 cut(s) | 457 |
| Bsh1236I | CGCG | 2 cut(s) | 204, 507 |
| BshFI | GGCC | 1 cut(s) | 37 |
| BsiHKAI | GWGCWC | 1 cut(s) | 291 |
| BsiHKCI | CYCGRG | 1 cut(s) | 290 |
| BsiSI | CCGG | 2 cut(s) | 577, 596 |
| BslFI | GGGAC | 1 cut(s) | 112 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 511, 602 |
| BsmFI | GGGAC | 1 cut(s) | 112 |
| BsnI | GGCC | 1 cut(s) | 37 |
| BsoBI | CYCGRG | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 1 cut(s) | 291 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 71 |
| BspACI | CCGC | 1 cut(s) | 505 |
| BspANI | GGCC | 1 cut(s) | 37 |
| BspCNI | CTCAG | 3 cut(s) | 63, 596, 618 |
| BspFNI | CGCG | 2 cut(s) | 204, 507 |
| BspLI | GGNNCC | 3 cut(s) | 100, 296, 528 |
| BsrI | ACTGG | 1 cut(s) | 38 |
| Bst4CI | ACNGT | 3 cut(s) | 114, 254, 502 |
| Bst6I | CTCTTC | 1 cut(s) | 150 |
| BstC8I | GCNNGC | 2 cut(s) | 197, 248 |
| BstDEI | CTNAG | 4 cut(s) | 71, 482, 583, 626 |
| BstF5I | GGATG | 3 cut(s) | 14, 72, 139 |
| BstFNI | CGCG | 2 cut(s) | 204, 507 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 201, 352, 612 |
| BstNSI | RCATGY | 1 cut(s) | 199 |
| BstUI | CGCG | 2 cut(s) | 204, 507 |
| BstV1I | GCAGC | 1 cut(s) | 457 |
| BstV2I | GAAGAC | 1 cut(s) | 567 |
| BsuRI | GGCC | 1 cut(s) | 37 |
| BtsCI | GGATG | 3 cut(s) | 14, 72, 139 |
| BtsIMutI | CAGTG | 1 cut(s) | 110 |
| Cac8I | GCNNGC | 2 cut(s) | 197, 248 |
| Cfr13I | GGNCC | 2 cut(s) | 99, 295 |
| Csp6I | GTAC | 3 cut(s) | 184, 364, 412 |
| CviAII | CATG | 2 cut(s) | 196, 280 |
| CviJI | RGCY | 6 cut(s) | 37, 152, 246, 289, 346, 615 |
| CviKI_1 | RGCY | 6 cut(s) | 37, 152, 246, 289, 346, 615 |
| CviQI | GTAC | 3 cut(s) | 184, 364, 412 |
| DdeI | CTNAG | 4 cut(s) | 71, 482, 583, 626 |
| Eam1104I | CTCTTC | 1 cut(s) | 150 |
| EarI | CTCTTC | 1 cut(s) | 150 |
| Ecl136II | GAGCTC | 1 cut(s) | 289 |
| Eco24I | GRGCYC | 1 cut(s) | 291 |
| Eco47I | GGWCC | 2 cut(s) | 99, 295 |
| Eco53kI | GAGCTC | 1 cut(s) | 289 |
| Eco57I | CTGAAG | 1 cut(s) | 174 |
| Eco88I | CYCGRG | 1 cut(s) | 290 |
| EcoICRI | GAGCTC | 1 cut(s) | 289 |
| EcoO109I | RGGNCCY | 1 cut(s) | 99 |
| EcoT38I | GRGCYC | 1 cut(s) | 291 |
| FaeI | CATG | 2 cut(s) | 199, 283 |
| FaiI | YATR | 4 cut(s) | 10, 197, 281, 353 |
| FaqI | GGGAC | 1 cut(s) | 112 |
| FatI | CATG | 2 cut(s) | 195, 279 |
| Fnu4HI | GCNGC | 1 cut(s) | 471 |
| FokI | GGATG | 2 cut(s) | 79, 146 |
| FriOI | GRGCYC | 1 cut(s) | 291 |
| Fsp4HI | GCNGC | 1 cut(s) | 471 |
| FspBI | CTAG | 2 cut(s) | 347, 356 |
| GluI | GCNGC | 1 cut(s) | 471 |
| HaeIII | GGCC | 1 cut(s) | 37 |
| HapII | CCGG | 2 cut(s) | 577, 596 |
| Hin1II | CATG | 2 cut(s) | 199, 283 |
| HincII | GTYRAC | 1 cut(s) | 117 |
| HindII | GTYRAC | 1 cut(s) | 117 |
| HinfI | GANTC | 2 cut(s) | 509, 533 |
| HpaI | GTTAAC | 1 cut(s) | 117 |
| HpaII | CCGG | 2 cut(s) | 577, 596 |
| HphI | GGTGA | 1 cut(s) | 56 |
| Hpy166II | GTNNAC | 3 cut(s) | 117, 165, 574 |
| Hpy188I | TCNGA | 7 cut(s) | 396, 440, 453, 463, 514, 586, 619 |
| Hpy188III | TCNNGA | 1 cut(s) | 639 |
| Hpy8I | GTNNAC | 3 cut(s) | 117, 165, 574 |
| HpyAV | CCTTC | 2 cut(s) | 487, 596 |
| HpyCH4III | ACNGT | 3 cut(s) | 114, 254, 502 |
| HpyCH4IV | ACGT | 2 cut(s) | 26, 427 |
| HpyCH4V | TGCA | 3 cut(s) | 24, 250, 473 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 201, 352, 612 |
| HpyF3I | CTNAG | 4 cut(s) | 71, 482, 583, 626 |
| HpySE526I | ACGT | 2 cut(s) | 26, 427 |
| Hsp92II | CATG | 2 cut(s) | 199, 283 |
| KspAI | GTTAAC | 1 cut(s) | 117 |
| LmnI | GCTCC | 3 cut(s) | 286, 343, 620 |
| LpnPI | CCDG | 4 cut(s) | 51, 442, 590, 609 |
| Lsp1109I | GCAGC | 1 cut(s) | 457 |
| LweI | GCATC | 2 cut(s) | 57, 457 |
| MaeI | CTAG | 2 cut(s) | 347, 356 |
| MaeII | ACGT | 2 cut(s) | 26, 427 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MboII | GAAGA | 8 cut(s) | 99, 158, 167, 202, 388, 391, 527, 572 |
| MhlI | GDGCHC | 1 cut(s) | 291 |
| MluCI | AATT | 1 cut(s) | 590 |
| MlyI | GAGTC | 1 cut(s) | 503 |
| MmeI | TCCRAC | 3 cut(s) | 307, 322, 504 |
| MroXI | GAANNNNTTC | 1 cut(s) | 173 |
| MseI | TTAA | 3 cut(s) | 116, 339, 432 |
| MspI | CCGG | 2 cut(s) | 577, 596 |
| MvnI | CGCG | 2 cut(s) | 204, 507 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 201, 352, 612 |
| NlaIII | CATG | 2 cut(s) | 199, 283 |
| NlaIV | GGNNCC | 3 cut(s) | 100, 296, 528 |
| NspI | RCATGY | 1 cut(s) | 199 |
| PaeI | GCATGC | 1 cut(s) | 199 |
| PdmI | GAANNNNTTC | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 533 |
| PkrI | GCNGC | 1 cut(s) | 472 |
| PleI | GAGTC | 1 cut(s) | 503 |
| PpsI | GAGTC | 1 cut(s) | 503 |
| PpuMI | RGGWCCY | 1 cut(s) | 99 |
| Psp124BI | GAGCTC | 1 cut(s) | 291 |
| Psp5II | RGGWCCY | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 3 cut(s) | 100, 296, 528 |
| PspPI | GGNCC | 2 cut(s) | 99, 295 |
| PspPPI | RGGWCCY | 1 cut(s) | 99 |
| RsaI | GTAC | 3 cut(s) | 185, 365, 413 |
| RsaNI | GTAC | 3 cut(s) | 184, 364, 412 |
| SacI | GAGCTC | 1 cut(s) | 291 |
| SaqAI | TTAA | 3 cut(s) | 116, 339, 432 |
| SatI | GCNGC | 1 cut(s) | 471 |
| Sau96I | GGNCC | 2 cut(s) | 99, 295 |
| ScaI | AGTACT | 1 cut(s) | 185 |
| SchI | GAGTC | 1 cut(s) | 503 |
| SduI | GDGCHC | 1 cut(s) | 291 |
| SfaNI | GCATC | 2 cut(s) | 57, 457 |
| SinI | GGWCC | 2 cut(s) | 99, 295 |
| SphI | GCATGC | 1 cut(s) | 199 |
| Sse9I | AATT | 1 cut(s) | 590 |
| SsiI | CCGC | 1 cut(s) | 505 |
| SspMI | CTAG | 2 cut(s) | 347, 356 |
| SstI | GAGCTC | 1 cut(s) | 291 |
| TaaI | ACNGT | 3 cut(s) | 114, 254, 502 |
| TaiI | ACGT | 2 cut(s) | 29, 430 |
| TaqI | TCGA | 4 cut(s) | 59, 213, 227, 311 |
| TasI | AATT | 1 cut(s) | 590 |
| TatI | WGTACW | 2 cut(s) | 183, 363 |
| TfiI | GAWTC | 1 cut(s) | 533 |
| Tru1I | TTAA | 3 cut(s) | 116, 339, 432 |
| Tru9I | TTAA | 3 cut(s) | 116, 339, 432 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TseI | GCWGC | 1 cut(s) | 470 |
| TspDTI | ATGAA | 2 cut(s) | 603, 636 |
| TspGWI | ACGGA | 1 cut(s) | 435 |
| TspRI | CASTG | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 2 cut(s) | 99, 295 |
| XceI | RCATGY | 1 cut(s) | 199 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 396 |
| XmnI | GAANNNNTTC | 1 cut(s) | 173 |
| XspI | CTAG | 2 cut(s) | 347, 356 |
| ZrmI | AGTACT | 1 cut(s) | 185 |