Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013332

Physical Location & Seq

Genomic Coordinates Forward (+)

66836383 .. 66838434

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG402700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCTTACCTTGACGTACTCACTGCCGGTATTTACTCGGCGGCTGGAATTTACCGGAATTTCCCACAGTAGAACCAGTGTAGTGGTATGTGGATTAAAGGGTCCAAGACCCAGATACCCAAGAGTCTGGAAAGCCAATAAGAAGATTGGGACTATTTCCAAATCACTCAAGCTTGTTGAGTGTGTTAAGGGTTTGTCAAATGTGAAAGAGGAGGTTTATGGGGCACTTGATTCTTTCATTGCTTGGGAATTGGAATTCCCTTTGATTACAGTGAAGAAGGCATTGAAGACTCTTGAGAATCAGAAAGACTGGAAAAGGATAATTCAGGTATCAAAATGGATGCTGAGCAAAGGTCAAGGAAGAACAATGGGGACCTATTTCACATTGTTGAATGCTTTAGCGGCGGATGGGAGACTTGAAGAAGCTGAAGAGCTTTGGACAAAGCTGTTCTCGCAGTACTTGGATAGCATGCCTCGAACGTTCTTTGACAAAATGATTTCGATTTACTATGAGAAGGGCTTGCATGACAAGATGTTTGAGATATTTGCTGACATGGAGGAGCTTGGTATCAAACCAAATATGTCGATTGTTGATAAGGTTGGAGATGTCTTTCAAAAGCTGGGTATGATGGACAAATACACTAAATTGAAGAAGAAATATCCACCGCCAAAATGGGAAATTCGGTACATCAAAGGAAAACGTGTTAGAATTCAAGCAAACAAGCGAAGCAATCTTGATGGTGATGACAAAATGCTAAATGAGGAGAAGGAAACAATCCAAAGCTCAAATGAAGTGTTAAATGCTGACTCAAATCCAGATGAACAGATTGTTGAAGCTGAGGAAGTGGACCAGAACTCGTCCAATTTACTTGAGGAAGCTGGTACAAATGTAGATGAACTCAGGGTTGAATCTAAAACCTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

308

Amino Acids

35.43

Weight (kDa)

8.74

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21190
fragaria_vesca	FvH4_7g30430
malus_domestica	MD01G1209900.v1.1 MD07G1280000.v1.1
prunus_persica	Prupe.2G302200_v2.0.a1
pyrus_communis	pycom01g22040 pycom07g25460
rosa_chinensis	RchiOBHm_Chr1g0378571
rosa_laevigata	RLG00000026422
rosa_multiflora	Rmu_sc0002395.1_g000007 Rmu_sc0008712.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280380
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431100 Rh1BG389400 Rh1CG402700 Rh1DG420600
rosa_wichuraiana	Rw1G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	40, 401, 404, 665
AclI	AACGTT	1 cut(s)	479
AcsI	RAATTY	5 cut(s)	47, 57, 254, 678, 708
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	4 cut(s)	17, 458, 686, 883
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	8 cut(s)	286, 391, 419, 614, 649, 713, 833, 908
AluBI	AGCT	9 cut(s)	172, 425, 433, 445, 562, 619, 783, 836, 878
AluI	AGCT	9 cut(s)	172, 425, 433, 445, 562, 619, 783, 836, 878
Alw26I	GTCTC	1 cut(s)	406
ApoI	RAATTY	5 cut(s)	47, 57, 254, 678, 708
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AspS9I	GGNCC	3 cut(s)	101, 372, 847
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	101, 372, 847
BaeGI	GKGCMC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	873, 906
BbsI	GAAGAC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	837
BccI	CCATC	3 cut(s)	401, 622, 731
BcoDI	GTCTC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	41, 402
BlpI	GCTNAGC	1 cut(s)	344
BlsI	GCNGC	2 cut(s)	42, 403
BmcAI	AGTACT	1 cut(s)	458
Bme18I	GGWCC	3 cut(s)	101, 372, 847
BmgT120I	GGNCC	3 cut(s)	101, 372, 847
BmiI	GGNNCC	2 cut(s)	102, 373
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	837
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	3 cut(s)	152, 314, 890
BsaWI	WCCGGW	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	75, 314
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	345, 412
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	335, 828, 913
BseNI	ACTGG	2 cut(s)	75, 314
BseRI	GAGGAG	3 cut(s)	224, 572, 776
BseSI	GKGCMC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	619
BsiSI	CCGG	2 cut(s)	26, 54
BslFI	GGGAC	2 cut(s)	163, 385
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	2 cut(s)	163, 385
BsmI	GAATGC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	344
BspACI	CCGC	4 cut(s)	40, 401, 404, 665
BspCNI	CTCAG	3 cut(s)	336, 829, 912
BspLI	GGNNCC	2 cut(s)	102, 373
BspQI	GCTCTTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	75, 314
BssAI	RCCGGY	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	68, 271
Bst6I	CTCTTC	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	470, 521
BstDEI	CTNAG	3 cut(s)	344, 837, 899
BstF5I	GGATG	2 cut(s)	345, 412
BstMAI	GTCTC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 451
BstNSI	RCATGY	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	293
BstXI	CCANNNNNNTGG	2 cut(s)	82, 126
BtsCI	GGATG	2 cut(s)	345, 412
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	20, 82, 276
Cac8I	GCNNGC	2 cut(s)	470, 521
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	101, 372, 847
Csp6I	GTAC	4 cut(s)	16, 457, 685, 882
CviAII	CATG	3 cut(s)	469, 524, 553
CviQI	GTAC	4 cut(s)	16, 457, 685, 882
DdeI	CTNAG	3 cut(s)	344, 837, 899
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	419
Eco47I	GGWCC	3 cut(s)	101, 372, 847
Eco57I	CTGAAG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	2 cut(s)	254, 708
FaeI	CATG	3 cut(s)	472, 527, 556
FaiI	YATR	8 cut(s)	88, 219, 470, 510, 525, 554, 581, 626
FaqI	GGGAC	2 cut(s)	163, 385
FatI	CATG	3 cut(s)	468, 523, 552
Fnu4HI	GCNGC	2 cut(s)	41, 402
FokI	GGATG	2 cut(s)	352, 419
Fsp4HI	GCNGC	2 cut(s)	41, 402
GluI	GCNGC	2 cut(s)	41, 402
GsaI	CCCAGC	1 cut(s)	623
HapII	CCGG	2 cut(s)	26, 54
Hin1II	CATG	3 cut(s)	472, 527, 556
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	6 cut(s)	123, 230, 289, 298, 806, 908
HpaII	CCGG	2 cut(s)	26, 54
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	5 cut(s)	127, 293, 734, 815, 924
Hpy8I	GTNNAC	1 cut(s)	847
HpyAV	CCTTC	3 cut(s)	271, 508, 760
HpyCH4III	ACNGT	2 cut(s)	68, 271
HpyCH4IV	ACGT	3 cut(s)	14, 479, 700
HpyCH4V	TGCA	1 cut(s)	523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 451
HpyF3I	CTNAG	3 cut(s)	344, 837, 899
HpySE526I	ACGT	3 cut(s)	14, 479, 700
Hsp92II	CATG	3 cut(s)	472, 527, 556
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	559
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	3 cut(s)	14, 479, 700
MboII	GAAGA	9 cut(s)	154, 286, 298, 372, 431, 440, 661, 664, 912
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	9 cut(s)	47, 57, 248, 254, 321, 644, 678, 708, 862
MlyI	GAGTC	3 cut(s)	132, 283, 800
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	7 cut(s)	202, 205, 483, 550, 754, 832, 865
MseI	TTAA	3 cut(s)	95, 186, 797
MspI	CCGG	2 cut(s)	26, 54
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	2 cut(s)	401, 451
NlaIII	CATG	3 cut(s)	472, 527, 556
NlaIV	GGNNCC	2 cut(s)	102, 373
NmeAIII	GCCGAG	1 cut(s)	16
NspI	RCATGY	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	423
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	230, 298, 908
PkrI	GCNGC	2 cut(s)	42, 403
PleI	GAGTC	3 cut(s)	131, 283, 800
PpsI	GAGTC	3 cut(s)	131, 283, 800
PpuMI	RGGWCCY	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	102, 373
PspPI	GGNCC	3 cut(s)	101, 372, 847
PspPPI	RGGWCCY	1 cut(s)	372
RsaI	GTAC	4 cut(s)	17, 458, 686, 883
RsaNI	GTAC	4 cut(s)	16, 457, 685, 882
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	95, 186, 797
SatI	GCNGC	2 cut(s)	41, 402
Sau96I	GGNCC	3 cut(s)	101, 372, 847
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	3 cut(s)	132, 283, 800
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	330
SinI	GGWCC	3 cut(s)	101, 372, 847
SmlI	CTYRAG	3 cut(s)	167, 293, 869
SmoI	CTYRAG	3 cut(s)	167, 293, 869
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	9 cut(s)	47, 57, 248, 254, 321, 644, 678, 708, 862
SsiI	CCGC	4 cut(s)	40, 401, 404, 665
TaaI	ACNGT	2 cut(s)	68, 271
TaiI	ACGT	3 cut(s)	17, 482, 703
TaqI	TCGA	3 cut(s)	475, 500, 584
TasI	AATT	9 cut(s)	47, 57, 248, 254, 321, 644, 678, 708, 862
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	2 cut(s)	43, 404
TfiI	GAWTC	3 cut(s)	230, 298, 908
Tru1I	TTAA	3 cut(s)	95, 186, 797
Tru9I	TTAA	3 cut(s)	95, 186, 797
TscAI	CASTG	3 cut(s)	27, 82, 276
TspDTI	ATGAA	4 cut(s)	226, 804, 834, 909
TspRI	CASTG	3 cut(s)	27, 82, 276
VpaK11BI	GGWCC	3 cut(s)	101, 372, 847
XapI	RAATTY	5 cut(s)	47, 57, 254, 678, 708
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.