Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013332

Physical Location & Seq

Genomic Coordinates Forward (+)

28963887 .. 28966374

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTTACCTTGACATACTCACTTCCGGTCTTTACTCGGCGACTGGAATTTATCAAAATCTCCCACAGTAGAAGCAGTGTAGTGCTATGTGCTGCAAAAGGTCCAAGACCCAGGTACCCAAGAGTCTGGAAAGCCAATAAGAGGATTGGGACCATTTCCAAATCGATTAAGCTTGTTGAGTCTATTAAGGGATTGTCAAATGTCAAAGAGGAAGTTTATGGGGCCCTTGATTCTTTCATTGCTTGGGAATTAGAATTCCCTCTGATTACAGTGAAGAAGGCATTGAAGACCCTTGAGAATCAAAAAGAATGGAAGAGGATCATTCAGGTATCAAAGTGGATGTTAAGCAAAGGTCAAGGAAGAACAATGGGGACCTATTTCACACTATTAAATGCTTTGGCAGAGGATGGGAGAGTTGAAGAAGCTGAAGAGCTATGGACAAAGTTATTCTCACAGTATTTGGAAAGCATGCCTCGCATGTTCTTTGACAAAATGATTTCTATTTACTATCGGCACGGCATACATGACAAGATGTTTGAGATTTTTGCAGACATGGAGGAGCTTGGGGTCCAACCGAATGTTTCAATTGTTACAAAGGTTGGAAATGTTTTTCAGGAGTTGGGTATGTTGGACAAATACCATAAGTTGAAGCAGAAATATCCACCACCAAAATGGGAGTATCGGTACATCAAAGGAAAACGTGTTAAAATTCGAGCAAATTATGAAAATGATGGTGCTGAAAAAATGCCGAGTCAGGAGAAGGAAACAGTCCACAGCTCAGAAGAATTGTTAGCAGCTGAATCAAATCCAAATGAAGACGTTGTAGCTGAGGAAGGGGACCAGAACTCAAGTGATTTACTCGAGGAAGCTGAATCGAGTTTAGATGAACTCACGATTGACTCTAGAACCCCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

306

Amino Acids

35.23

Weight (kDa)

7.0

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21190
fragaria_vesca	FvH4_7g30430
malus_domestica	MD01G1209900.v1.1 MD07G1280000.v1.1
prunus_persica	Prupe.2G302200_v2.0.a1
pyrus_communis	pycom01g22040 pycom07g25460
rosa_chinensis	RchiOBHm_Chr1g0378571
rosa_laevigata	RLG00000026422
rosa_multiflora	Rmu_sc0002395.1_g000007 Rmu_sc0008712.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280380
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431100 Rh1BG389400 Rh1CG402700 Rh1DG420600
rosa_wichuraiana	Rw1G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	3 cut(s)	47, 254, 708
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	116, 686
AfiI	CCNNNNNNNGG	1 cut(s)	141
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	286, 419, 585, 649
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	8 cut(s)	172, 425, 433, 562, 777, 797, 827, 869
AluI	AGCT	8 cut(s)	172, 425, 433, 562, 777, 797, 827, 869
AlwI	GGATC	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	860
AoxI	GGCC	1 cut(s)	222
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	92, 794
ApoI	RAATTY	3 cut(s)	47, 254, 708
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp718I	GGTACC	1 cut(s)	114
AspS9I	GGNCC	7 cut(s)	101, 150, 222, 223, 372, 568, 838
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	5 cut(s)	101, 150, 372, 568, 838
BaeGI	GKGCMC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	2 cut(s)	293, 822
BbvCI	CCTCAGC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	79, 806
BccI	CCATC	2 cut(s)	401, 725
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	112
BfaI	CTAG	1 cut(s)	903
BisI	GCNGC	2 cut(s)	93, 795
BlsI	GCNGC	2 cut(s)	94, 796
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	5 cut(s)	101, 150, 372, 568, 838
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	7 cut(s)	101, 150, 222, 223, 372, 568, 838
BmiI	GGNNCC	7 cut(s)	116, 151, 223, 224, 373, 569, 839
BmrFI	CCNGG	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	293, 822
Bpu10I	CCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	2 cut(s)	314, 832
Bsa29I	ATCGAT	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	345, 412
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	792, 819
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	79, 806
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	3 cut(s)	163, 385, 851
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	3 cut(s)	163, 385, 851
BsnI	GGCC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	860
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	791, 820
BspDI	ATCGAT	1 cut(s)	164
BspLI	GGNNCC	7 cut(s)	116, 151, 223, 224, 373, 569, 839
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	4 cut(s)	68, 271, 456, 769
Bst6I	CTCTTC	2 cut(s)	308, 423
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	778, 828
BstF5I	GGATG	2 cut(s)	345, 412
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	2 cut(s)	472, 481
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	79, 806
BstV2I	GAAGAC	2 cut(s)	293, 822
BstXI	CCANNNNNNTGG	2 cut(s)	126, 672
Bsu15I	ATCGAT	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	345, 412
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 276
Cac8I	GCNNGC	1 cut(s)	470
Cfr13I	GGNCC	7 cut(s)	101, 150, 222, 223, 372, 568, 838
ClaI	ATCGAT	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	115, 685
CviAII	CATG	4 cut(s)	469, 478, 524, 553
CviQI	GTAC	2 cut(s)	115, 685
DdeI	CTNAG	2 cut(s)	778, 828
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	308, 423
EarI	CTCTTC	2 cut(s)	308, 423
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	5 cut(s)	101, 150, 372, 568, 838
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	860
EcoO109I	RGGNCCY	3 cut(s)	222, 223, 372
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	4 cut(s)	472, 481, 527, 556
FaqI	GGGAC	3 cut(s)	163, 385, 851
FatI	CATG	4 cut(s)	468, 477, 523, 552
Fnu4HI	GCNGC	2 cut(s)	93, 795
FokI	GGATG	2 cut(s)	352, 419
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	93, 795
FspBI	CTAG	1 cut(s)	903
GluI	GCNGC	2 cut(s)	93, 795
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	4 cut(s)	472, 481, 527, 556
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	8 cut(s)	123, 179, 230, 298, 751, 800, 872, 899
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	2 cut(s)	264, 781
Hpy188III	TCNNGA	5 cut(s)	127, 614, 755, 892, 903
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	3 cut(s)	271, 754, 827
HpyCH4III	ACNGT	4 cut(s)	68, 271, 456, 769
HpyCH4IV	ACGT	2 cut(s)	700, 819
HpyCH4V	TGCA	2 cut(s)	95, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	2 cut(s)	778, 828
HpySE526I	ACGT	2 cut(s)	700, 819
Hsp92II	CATG	4 cut(s)	472, 481, 527, 556
KpnI	GGTACC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	9 cut(s)	29, 39, 97, 112, 124, 311, 599, 740, 854
Lsp1109I	GCAGC	2 cut(s)	79, 806
MaeI	CTAG	1 cut(s)	903
MaeII	ACGT	2 cut(s)	700, 819
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	8 cut(s)	286, 298, 325, 372, 431, 440, 794, 827
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	7 cut(s)	47, 248, 254, 585, 708, 718, 785
MlyI	GAGTC	4 cut(s)	132, 188, 760, 893
MmeI	TCCRAC	3 cut(s)	580, 595, 609
MnlI	CCTC	9 cut(s)	135, 202, 270, 309, 397, 483, 550, 823, 856
MseI	TTAA	5 cut(s)	168, 186, 344, 389, 705
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	474
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	4 cut(s)	472, 481, 527, 556
NlaIV	GGNNCC	7 cut(s)	116, 151, 223, 224, 373, 569, 839
NmeAIII	GCCGAG	2 cut(s)	16, 774
NspI	RCATGY	2 cut(s)	472, 481
PaeI	GCATGC	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	860
PciSI	GCTCTTC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	230, 298, 800, 872
PkrI	GCNGC	2 cut(s)	94, 796
PleI	GAGTC	4 cut(s)	131, 187, 759, 893
PpsI	GAGTC	4 cut(s)	131, 187, 759, 893
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	7 cut(s)	116, 151, 223, 224, 373, 569, 839
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	7 cut(s)	101, 150, 222, 223, 372, 568, 838
PspPPI	RGGWCCY	1 cut(s)	372
PspXI	VCTCGAGB	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	116, 686
RsaNI	GTAC	2 cut(s)	115, 685
RseI	CAYNNNNRTG	1 cut(s)	670
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	5 cut(s)	168, 186, 344, 389, 705
SatI	GCNGC	2 cut(s)	93, 795
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	7 cut(s)	101, 150, 222, 223, 372, 568, 838
SchI	GAGTC	4 cut(s)	132, 188, 760, 893
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	860
SinI	GGWCC	5 cut(s)	101, 150, 372, 568, 838
SlaI	CTCGAG	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	3 cut(s)	293, 847, 860
SmoI	CTYRAG	3 cut(s)	293, 847, 860
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	7 cut(s)	47, 248, 254, 585, 708, 718, 785
SspMI	CTAG	1 cut(s)	903
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	4 cut(s)	68, 271, 456, 769
TaiI	ACGT	2 cut(s)	703, 822
TaqI	TCGA	4 cut(s)	164, 712, 861, 875
TasI	AATT	7 cut(s)	47, 248, 254, 585, 708, 718, 785
TfiI	GAWTC	4 cut(s)	230, 298, 800, 872
Tru1I	TTAA	5 cut(s)	168, 186, 344, 389, 705
Tru9I	TTAA	5 cut(s)	168, 186, 344, 389, 705
TscAI	CASTG	2 cut(s)	82, 276
TseI	GCWGC	2 cut(s)	92, 794
TspDTI	ATGAA	4 cut(s)	226, 738, 828, 900
TspRI	CASTG	2 cut(s)	82, 276
VpaK11BI	GGWCC	5 cut(s)	101, 150, 372, 568, 838
XapI	RAATTY	3 cut(s)	47, 254, 708
XbaI	TCTAGA	1 cut(s)	902
XceI	RCATGY	2 cut(s)	472, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
XhoI	CTCGAG	1 cut(s)	860
XspI	CTAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.