Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013332

Physical Location & Seq

Genomic Coordinates Forward (+)

25771529 .. 25773076

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCTTACCTTGCAACACTCACTTCCGGCCTTCACTCGGGGACTGGAATTCATCAAATCTTCCCACAGTAGAAGCAGTGTAGTGGTATGTGCTCAAAAGGGTCCAAGACCCAGATACCCAAGAGTCTGGAAAGCCAATAAACGGATCGGAACCGTTTCCAAATCCCTCAAACTTGTTGAATCTATTAAGGGGTTGTCAAATGTGAAAGAGGAAGTTTATGGAGCCCTTGATTCTTTTATTGCTTGGGAATTAGAATTCCCGTTGATCACAGTGAAGAAGGCACTCAAGTCCCTTGAGAACCAAAGGGAATGGAAGAGGATAATTCAGGTGTCAAAGTGGATGCTGAGCAAAGGGCAAGGAAGAACAATGGGGACCTATTTCACACTGTTAACTGCTTTGGCCGAGGATGGGAGGATTGACGAAGCTGAAGAGCTCTGGACTAAGTTGTTTTCGCAGTACTTGGAAAGCATGCCTCGCATGTTCTTCGACAAAATGATTTCAATTTACTACCAGCACGGATTGCACGATAAGATGTTTGAGATATTTGCCGATATGGAGGAGCTTGGCGTACAACCAAATGTTTCAATTGTTACGAAGGTTGGAAATGTCTTTAAGGAGCTAGGTATGCTGGACAAATACAACAAGTTGAAGAAGAAATATCCGCCACCAAAATGGGAGTATCGGTACATCAAGGGAAAACGCGTTAAAGTCCGAGCAAACTATCAGAACCAGTCTGATGGTGCTGCAAAGGTGATTAGTGAGGAGAAGGAAACTGTCCGCAGCTCCGAAGAGTTGTTAGAAGCTGAATCGAATCCAGATGAACAAATTGTTGAAGCCGAGGAAGAGGACCAGAACTCAAATGATTTATCGGAGGAAGCCGAAGCAAGTTCAGATCAACTTAGGGTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

305

Amino Acids

35.05

Weight (kDa)

7.71

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21190
fragaria_vesca	FvH4_7g30430
malus_domestica	MD01G1209900.v1.1 MD07G1280000.v1.1
prunus_persica	Prupe.2G302200_v2.0.a1
pyrus_communis	pycom01g22040 pycom07g25460
rosa_chinensis	RchiOBHm_Chr1g0378571
rosa_laevigata	RLG00000026422
rosa_multiflora	Rmu_sc0002395.1_g000007 Rmu_sc0008712.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280380
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431100 Rh1BG389400 Rh1CG402700 Rh1DG420600
rosa_wichuraiana	Rw1G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	702
AciI	CCGC	2 cut(s)	662, 778
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	47, 254
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	3 cut(s)	458, 570, 686
AfiI	CCNNNNNNNGG	3 cut(s)	36, 141, 408
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	6 cut(s)	179, 501, 585, 649, 833, 908
AluBI	AGCT	6 cut(s)	425, 433, 562, 619, 783, 803
AluI	AGCT	6 cut(s)	425, 433, 562, 619, 783, 803
Alw21I	GWGCWC	2 cut(s)	94, 435
AlwI	GGATC	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	27, 399
ApeKI	GCWGC	2 cut(s)	743, 780
ApoI	RAATTY	2 cut(s)	47, 254
Asp700I	GAANNNNTTC	1 cut(s)	154
AspS9I	GGNCC	3 cut(s)	101, 372, 847
AsuHPI	GGTGA	1 cut(s)	763
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	3 cut(s)	101, 372, 847
BanII	GRGCYC	2 cut(s)	226, 435
Bbv12I	GWGCWC	2 cut(s)	94, 435
BbvI	GCAGC	2 cut(s)	730, 792
BccI	CCATC	2 cut(s)	401, 731
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BclI	TGATCA	1 cut(s)	264
BfaI	CTAG	1 cut(s)	620
BisI	GCNGC	2 cut(s)	744, 781
BlpI	GCTNAGC	1 cut(s)	344
BlsI	GCNGC	2 cut(s)	745, 782
BmcAI	AGTACT	1 cut(s)	458
Bme18I	GGWCC	3 cut(s)	101, 372, 847
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	101, 372, 847
BmiI	GGNNCC	4 cut(s)	102, 151, 223, 373
BmsI	GCATC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	269, 314
BsaJI	CCNNGG	2 cut(s)	402, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 141, 408
Bse1I	ACTGG	2 cut(s)	48, 730
BseDI	CCNNGG	2 cut(s)	402, 837
BseGI	GGATG	2 cut(s)	345, 412
BseLI	CCNNNNNNNGG	3 cut(s)	36, 141, 408
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	48, 730
BseRI	GAGGAG	2 cut(s)	572, 776
BseXI	GCAGC	2 cut(s)	730, 792
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	29, 401
BsiHKAI	GWGCWC	2 cut(s)	94, 435
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	3 cut(s)	54, 274, 385
BslI	CCNNNNNNNGG	3 cut(s)	36, 141, 408
BsmFI	GGGAC	3 cut(s)	54, 274, 385
BsnI	GGCC	2 cut(s)	29, 401
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	94, 226, 435
Bsp143I	GATC	3 cut(s)	144, 264, 892
Bsp1720I	GCTNAGC	1 cut(s)	344
BspACI	CCGC	2 cut(s)	662, 778
BspANI	GGCC	2 cut(s)	29, 401
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	4 cut(s)	102, 151, 223, 373
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	48, 730
BssECI	CCNNGG	2 cut(s)	402, 837
BssMI	GATC	3 cut(s)	144, 264, 892
Bst4CI	ACNGT	5 cut(s)	68, 154, 271, 387, 775
Bst6I	CTCTTC	4 cut(s)	308, 423, 783, 837
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	3 cut(s)	344, 441, 899
BstF5I	GGATG	2 cut(s)	345, 412
BstFNI	CGCG	1 cut(s)	702
BstKTI	GATC	3 cut(s)	147, 267, 895
BstMBI	GATC	3 cut(s)	144, 264, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 474, 520, 625
BstNSI	RCATGY	2 cut(s)	472, 481
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	730, 792
BstXI	CCANNNNNNTGG	3 cut(s)	126, 672, 737
BsuRI	GGCC	2 cut(s)	29, 401
BtsCI	GGATG	2 cut(s)	345, 412
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	3 cut(s)	82, 276, 383
Cac8I	GCNNGC	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	101, 372, 847
Csp6I	GTAC	3 cut(s)	457, 569, 685
CviAII	CATG	2 cut(s)	469, 478
CviQI	GTAC	3 cut(s)	457, 569, 685
DdeI	CTNAG	3 cut(s)	344, 441, 899
DpnI	GATC	3 cut(s)	146, 266, 894
DpnII	GATC	3 cut(s)	144, 264, 892
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	4 cut(s)	308, 423, 783, 837
EarI	CTCTTC	4 cut(s)	308, 423, 783, 837
EciI	GGCGGA	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	2 cut(s)	226, 435
Eco47I	GGWCC	3 cut(s)	101, 372, 847
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	2 cut(s)	47, 254
EcoT38I	GRGCYC	2 cut(s)	226, 435
FaeI	CATG	2 cut(s)	472, 481
FaiI	YATR	6 cut(s)	88, 219, 470, 479, 554, 626
FaqI	GGGAC	3 cut(s)	54, 274, 385
FatI	CATG	2 cut(s)	468, 477
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	744, 781
FokI	GGATG	2 cut(s)	352, 419
FriOI	GRGCYC	2 cut(s)	226, 435
Fsp4HI	GCNGC	2 cut(s)	744, 781
FspBI	CTAG	1 cut(s)	620
GluI	GCNGC	2 cut(s)	744, 781
HaeIII	GGCC	2 cut(s)	29, 401
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	472, 481
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	5 cut(s)	123, 179, 230, 806, 811
HpaI	GTTAAC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	7 cut(s)	149, 713, 726, 736, 787, 871, 892
Hpy188III	TCNNGA	4 cut(s)	127, 436, 815, 912
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	4 cut(s)	40, 271, 589, 760
HpyCH4III	ACNGT	5 cut(s)	68, 154, 271, 387, 775
HpyCH4V	TGCA	3 cut(s)	13, 523, 746
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 474, 520, 625
HpyF3I	CTNAG	3 cut(s)	344, 441, 899
Hsp92II	CATG	2 cut(s)	472, 481
Ksp22I	TGATCA	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	144, 264, 892
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	4 cut(s)	221, 559, 616, 788
Lsp1109I	GCAGC	2 cut(s)	730, 792
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	620
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	3 cut(s)	146, 266, 894
MboI	GATC	3 cut(s)	144, 264, 892
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	94, 226, 435
MluCI	AATT	7 cut(s)	47, 248, 254, 321, 501, 585, 825
MluI	ACGCGT	1 cut(s)	700
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	4 cut(s)	186, 389, 612, 705
MslI	CAYNNNNRTG	1 cut(s)	670
MspI	CCGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	4 cut(s)	10, 474, 520, 625
NdeII	GATC	3 cut(s)	144, 264, 892
NlaIII	CATG	2 cut(s)	472, 481
NlaIV	GGNNCC	4 cut(s)	102, 151, 223, 373
NmeAIII	GCCGAG	2 cut(s)	427, 862
NspI	RCATGY	2 cut(s)	472, 481
PaeI	GCATGC	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	4 cut(s)	179, 230, 806, 811
PkrI	GCNGC	2 cut(s)	745, 782
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	372
PspN4I	GGNNCC	4 cut(s)	102, 151, 223, 373
PspPI	GGNCC	3 cut(s)	101, 372, 847
PspPPI	RGGWCCY	1 cut(s)	372
RsaI	GTAC	3 cut(s)	458, 570, 686
RsaNI	GTAC	3 cut(s)	457, 569, 685
RseI	CAYNNNNRTG	1 cut(s)	670
SacI	GAGCTC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	186, 389, 612, 705
SatI	GCNGC	2 cut(s)	744, 781
Sau3AI	GATC	3 cut(s)	144, 264, 892
Sau96I	GGNCC	3 cut(s)	101, 372, 847
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	1 cut(s)	132
SduI	GDGCHC	3 cut(s)	94, 226, 435
SfaNI	GCATC	1 cut(s)	330
SinI	GGWCC	3 cut(s)	101, 372, 847
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	2 cut(s)	284, 293
SmoI	CTYRAG	2 cut(s)	284, 293
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	7 cut(s)	47, 248, 254, 321, 501, 585, 825
SsiI	CCGC	2 cut(s)	662, 778
SspMI	CTAG	1 cut(s)	620
SstI	GAGCTC	1 cut(s)	435
TaaI	ACNGT	5 cut(s)	68, 154, 271, 387, 775
TaqI	TCGA	2 cut(s)	486, 809
TasI	AATT	7 cut(s)	47, 248, 254, 321, 501, 585, 825
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	4 cut(s)	179, 230, 806, 811
Tru1I	TTAA	4 cut(s)	186, 389, 612, 705
Tru9I	TTAA	4 cut(s)	186, 389, 612, 705
TscAI	CASTG	3 cut(s)	82, 276, 390
TseI	GCWGC	2 cut(s)	743, 780
TspDTI	ATGAA	2 cut(s)	40, 834
TspGWI	ACGGA	2 cut(s)	157, 531
TspRI	CASTG	3 cut(s)	82, 276, 390
VpaK11BI	GGWCC	3 cut(s)	101, 372, 847
XapI	RAATTY	2 cut(s)	47, 254
XceI	RCATGY	2 cut(s)	472, 481
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	1 cut(s)	620
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.