Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013332

Physical Location & Seq

Genomic Coordinates Forward (+)

30397307 .. 30399443

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1209900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCTTACATTGAAACACTCTCTACCGGCCTTCACTCGAGGACTGGAATTCATCAAATTTCCCCACAGGAGAAGCAGTGTAGTGGTATGTGCTCAAAAGGGTCCAAGACCCAGGTGCCCAAGAGTCTGGAAAGCCAATAAACGGATTGGAACCGTTTCCAAATCCCTCAAACTTGTTGAATCTATTAAGGGATTGTCAAATGTGAAAGAGGAAGTTTATGGAGCCCTTGATTCTTTCATTGCTTGGGAATTAGAATTCCCTTTGATTACAGTGAAGAAGGCGCTCAAGTCCCTTGAGAATCAAAAGGAGTGGAAGAGGATAATTCAGGTGTCAAAGTGGATGCTGAGCAAAGGGCAAGGAAGAACAATGGGGACCTATTTCACACTGTTAACTGCTTTGGCAGAGGATGGGAGGATTGAAGAAGCTGAAGAGTTGTGGACCAAGTTGTTCTCGCAGTACTTGGAAAGCATGCCTCGCATGTTCTTCGACAAGATGATTTCGATTTACTACCAACACGGCTTGCACGATAAGATGTTTGAGATATTTGCTGACATGGAGGAGCTCGGGGTCCAACCAAATGTTTCGATTGTTACAAAGGTTGGAAATGCCTTTAAGGAGCTAGATATGCTAGACAAGTACAATAAGTTGAAGAAGAAATATCCGCCTCCGAAATGGGAGTATCGGTACATCAACGGAAAACGTGTTAAAGTCCGAGCAAACTATCAGAACAGGTCTGATGATGCTGCAAAAATGCCAAGTGAGGGGAAGGAAACAGTCCGCGGCTCGGAAGAAATGTTGGAACCCGAATCAAATCCAAACGAACACATTGTTGAAGACGAGGAAGTGAACCGGAACTCAGATGAATTACTGGAGGAAGGCGAAACAAGTTCCGATGAACCGAGTGTTCAATCTCGAAACTCTTTTTCACCAGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

313

Amino Acids

36.14

Weight (kDa)

8.77

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21190
fragaria_vesca	FvH4_7g30430
malus_domestica	MD01G1209900.v1.1 MD07G1280000.v1.1
prunus_persica	Prupe.2G302200_v2.0.a1
pyrus_communis	pycom01g22040 pycom07g25460
rosa_chinensis	RchiOBHm_Chr1g0378571
rosa_laevigata	RLG00000026422
rosa_multiflora	Rmu_sc0002395.1_g000007 Rmu_sc0008712.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280380
rosa_rugosa	Rorug01G0409700
rosa_samantha	Rh1AG431100 Rh1BG389400 Rh1CG402700 Rh1DG420600
rosa_wichuraiana	Rw1G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AccII	CGCG	1 cut(s)	780
AciI	CCGC	3 cut(s)	662, 778, 780
AcsI	RAATTY	3 cut(s)	47, 56, 254
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	3 cut(s)	458, 638, 686
AfiI	CCNNNNNNNGG	3 cut(s)	141, 761, 784
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	6 cut(s)	13, 179, 419, 649, 833, 908
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	425, 562, 619
AluI	AGCT	3 cut(s)	425, 562, 619
Alw21I	GWGCWC	2 cut(s)	94, 564
Ama87I	CYCGRG	2 cut(s)	36, 563
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	3 cut(s)	47, 56, 254
Asp700I	GAANNNNTTC	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	4 cut(s)	101, 372, 438, 568
AsuHPI	GGTGA	1 cut(s)	918
AvaI	CYCGRG	2 cut(s)	36, 563
AvaII	GGWCC	4 cut(s)	101, 372, 438, 568
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	226, 564
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	94, 564
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	532
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	1 cut(s)	112
BfaI	CTAG	2 cut(s)	620, 629
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	2 cut(s)	744, 781
BlpI	GCTNAGC	1 cut(s)	344
BlsI	GCNGC	2 cut(s)	745, 782
BmcAI	AGTACT	1 cut(s)	458
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	4 cut(s)	101, 372, 438, 568
BmeT110I	CYCGRG	2 cut(s)	36, 563
BmgT120I	GGNCC	4 cut(s)	101, 372, 438, 568
BmiI	GGNNCC	7 cut(s)	102, 116, 151, 223, 373, 569, 801
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	330, 730
BpiI	GAAGAC	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	890
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	269, 314
BsaJI	CCNNGG	2 cut(s)	110, 778
BsaWI	WCCGGW	1 cut(s)	849
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 761, 784
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	3 cut(s)	48, 873, 929
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	110, 778
BseGI	GGATG	2 cut(s)	345, 412
BseLI	CCNNNNNNNGG	3 cut(s)	141, 761, 784
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	335, 870
BseNI	ACTGG	3 cut(s)	48, 873, 929
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	730
Bsh1236I	CGCG	1 cut(s)	780
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	94, 564
BsiHKCI	CYCGRG	2 cut(s)	36, 563
BsiSI	CCGG	2 cut(s)	26, 850
BslFI	GGGAC	2 cut(s)	274, 385
BslI	CCNNNNNNNGG	3 cut(s)	141, 761, 784
BsmFI	GGGAC	2 cut(s)	274, 385
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	2 cut(s)	36, 563
Bsp1286I	GDGCHC	4 cut(s)	94, 119, 226, 564
Bsp1720I	GCTNAGC	1 cut(s)	344
BspACI	CCGC	3 cut(s)	662, 778, 780
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	336, 869
BspFNI	CGCG	1 cut(s)	780
BspLI	GGNNCC	7 cut(s)	102, 116, 151, 223, 373, 569, 801
BspT107I	GGYRCC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	3 cut(s)	48, 873, 929
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	110, 778
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	4 cut(s)	154, 271, 387, 775
Bst6I	CTCTTC	2 cut(s)	308, 423
BstC8I	GCNNGC	2 cut(s)	470, 521
BstDEI	CTNAG	2 cut(s)	344, 856
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	2 cut(s)	345, 412
BstFNI	CGCG	1 cut(s)	780
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 625
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	2 cut(s)	472, 481
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	1 cut(s)	840
BstXI	CCANNNNNNTGG	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	2 cut(s)	345, 412
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	3 cut(s)	82, 276, 383
Cac8I	GCNNGC	2 cut(s)	470, 521
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	101, 372, 438, 568
Cfr42I	CCGCGG	1 cut(s)	781
Csp6I	GTAC	3 cut(s)	457, 637, 685
CspCI	CAANNNNNGTGG	2 cut(s)	290, 325
CviAII	CATG	3 cut(s)	469, 478, 553
CviJI	RGCY	8 cut(s)	29, 134, 224, 425, 519, 562, 619, 783
CviKI_1	RGCY	8 cut(s)	29, 134, 224, 425, 519, 562, 619, 783
CviQI	GTAC	3 cut(s)	457, 637, 685
DdeI	CTNAG	2 cut(s)	344, 856
Eam1104I	CTCTTC	2 cut(s)	308, 423
EarI	CTCTTC	2 cut(s)	308, 423
EciI	GGCGGA	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	2 cut(s)	226, 564
Eco47I	GGWCC	4 cut(s)	101, 372, 438, 568
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	2 cut(s)	36, 563
EcoICRI	GAGCTC	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	2 cut(s)	47, 254
EcoRII	CCWGG	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	226, 564
FaeI	CATG	3 cut(s)	472, 481, 556
FaiI	YATR	6 cut(s)	88, 219, 470, 479, 554, 626
FaqI	GGGAC	2 cut(s)	274, 385
FatI	CATG	3 cut(s)	468, 477, 552
Fnu4HI	GCNGC	2 cut(s)	744, 781
FokI	GGATG	2 cut(s)	352, 419
FriOI	GRGCYC	2 cut(s)	226, 564
Fsp4HI	GCNGC	2 cut(s)	744, 781
FspBI	CTAG	2 cut(s)	620, 629
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	744, 781
GsuI	CTGGAG	1 cut(s)	890
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	26, 850
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	472, 481, 556
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	5 cut(s)	123, 179, 230, 298, 806
HpaI	GTTAAC	1 cut(s)	390
HpaII	CCGG	2 cut(s)	26, 850
HphI	GGTGA	1 cut(s)	918
Hpy166II	GTNNAC	3 cut(s)	390, 438, 847
Hpy188I	TCNGA	7 cut(s)	669, 713, 726, 736, 787, 859, 892
Hpy188III	TCNNGA	2 cut(s)	127, 912
Hpy8I	GTNNAC	3 cut(s)	390, 438, 847
HpyAV	CCTTC	4 cut(s)	40, 271, 760, 869
HpyCH4III	ACNGT	4 cut(s)	154, 271, 387, 775
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	2 cut(s)	523, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 625
HpyF3I	CTNAG	2 cut(s)	344, 856
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	3 cut(s)	472, 481, 556
HspAI	GCGC	1 cut(s)	281
KspAI	GTTAAC	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	781
LmnI	GCTCC	3 cut(s)	221, 559, 616
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	2 cut(s)	330, 730
MaeI	CTAG	2 cut(s)	620, 629
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	1 cut(s)	589
MhlI	GDGCHC	4 cut(s)	94, 119, 226, 564
MluCI	AATT	6 cut(s)	47, 56, 248, 254, 321, 863
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	3 cut(s)	580, 595, 777
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	4 cut(s)	186, 389, 612, 705
MspA1I	CMGCKG	1 cut(s)	780
MspI	CCGG	2 cut(s)	26, 850
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	474, 625
NlaIII	CATG	3 cut(s)	472, 481, 556
NlaIV	GGNNCC	7 cut(s)	102, 116, 151, 223, 373, 569, 801
NspI	RCATGY	2 cut(s)	472, 481
PaeI	GCATGC	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	4 cut(s)	179, 230, 298, 806
PkrI	GCNGC	2 cut(s)	745, 782
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	7 cut(s)	102, 116, 151, 223, 373, 569, 801
PspPI	GGNCC	4 cut(s)	101, 372, 438, 568
PspPPI	RGGWCCY	1 cut(s)	372
PspXI	VCTCGAGB	1 cut(s)	36
RsaI	GTAC	3 cut(s)	458, 638, 686
RsaNI	GTAC	3 cut(s)	457, 637, 685
SacI	GAGCTC	1 cut(s)	564
SacII	CCGCGG	1 cut(s)	781
SaqAI	TTAA	4 cut(s)	186, 389, 612, 705
SatI	GCNGC	2 cut(s)	744, 781
Sau96I	GGNCC	4 cut(s)	101, 372, 438, 568
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	4 cut(s)	94, 119, 226, 564
SetI	ASST	9 cut(s)	116, 330, 377, 427, 564, 600, 621, 703, 734
SfaNI	GCATC	2 cut(s)	330, 730
Sfr274I	CTCGAG	1 cut(s)	36
Sfr303I	CCGCGG	1 cut(s)	781
SgrBI	CCGCGG	1 cut(s)	781
SinI	GGWCC	4 cut(s)	101, 372, 438, 568
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	3 cut(s)	36, 284, 293
SmoI	CTYRAG	3 cut(s)	36, 284, 293
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	6 cut(s)	47, 56, 248, 254, 321, 863
SsiI	CCGC	3 cut(s)	662, 778, 780
SspMI	CTAG	2 cut(s)	620, 629
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	4 cut(s)	154, 271, 387, 775
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	5 cut(s)	37, 486, 500, 584, 913
TasI	AATT	6 cut(s)	47, 56, 248, 254, 321, 863
TatI	WGTACW	2 cut(s)	456, 636
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	4 cut(s)	179, 230, 298, 806
Tru1I	TTAA	4 cut(s)	186, 389, 612, 705
Tru9I	TTAA	4 cut(s)	186, 389, 612, 705
TscAI	CASTG	3 cut(s)	82, 276, 390
TseI	GCWGC	1 cut(s)	743
TspDTI	ATGAA	4 cut(s)	40, 226, 876, 909
TspGWI	ACGGA	2 cut(s)	157, 708
TspRI	CASTG	3 cut(s)	82, 276, 390
VpaK11BI	GGWCC	4 cut(s)	101, 372, 438, 568
XapI	RAATTY	3 cut(s)	47, 56, 254
XceI	RCATGY	2 cut(s)	472, 481
XhoI	CTCGAG	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	2 cut(s)	620, 629
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.