Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005252

Physical Location & Seq

Genomic Coordinates Forward (+)

11791321 .. 11793137

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGACTTCGAAGCTTCAAGCTATTTGGAATCACCCTGCCGGACCTAAAACCATTCATTTCTGGGCACCAACGTTCAAGTGGGGTATTAGCATTGCCAACATTGCAGACTTTGCCAAACCTCCAGAGAAACTTTCCTATCCTCAACAAATCGCGGTTACATGCACTGGTGTTATTTGGTCTCGTTACAGCATGGTAATCAATCCGAAAAACTGGAACCTCTTCAGTGTTAATGTTGCTATGGCAGGGACAGGCATATACCAGCTTGCTCGTAAAATAAAACACGATTATGCAACCGAAGCTGAGCCTGCCGTTGCGAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098573 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

108

Amino Acids

12.0

Weight (kDa)

9.37

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	6 - 103	1.5e-41	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14695 AT4G14695 AT4G14695 AT4G22310
fragaria_vesca	FvH4_2g37250
malus_domestica	MD03G1193700.v1.1 MD05G1356700.v1.1 MD10G1329800.v1.1
prunus_persica	Prupe.4G012300_v2.0.a1 Prupe.4G223400_v2.0.a1
pyrus_communis	pycom05g32270 pycom10g27950
rosa_chinensis	RchiOBHm_Chr6g0304451 RchiOBHm_Chr6g0304471
rosa_laevigata	RLG00000010974 RLG00000010976
rosa_roxburghii	Rroxscaffold_7G00163720
rosa_rugosa	Rorug06G0331900 Rorug06G0332000
rosa_samantha	Rh6AG444600 Rh6AG444800 Rh6BG457600 Rh6BG457800 Rh6CG457400 Rh6CG457500 Rh6DG444100 Rh6DG444300
rosa_wichuraiana	Rw6G038600 Rw6G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	155
AciI	CCGC	1 cut(s)	155
AclI	AACGTT	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	20, 79
AluBI	AGCT	4 cut(s)	16, 23, 265, 302
AluI	AGCT	4 cut(s)	16, 23, 265, 302
Alw26I	GTCTC	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	186
BlpI	GCTNAGC	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	69, 218
BpmI	CTGGAG	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	186
Bse1I	ACTGG	2 cut(s)	172, 218
Bse3DI	GCAATG	2 cut(s)	93, 102
BseMI	GCAATG	2 cut(s)	93, 102
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	172, 218
BseSI	GKGCMC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	262
Bso31I	GGTCTC	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	69, 218
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	186
BsrDI	GCAATG	2 cut(s)	93, 102
BsrI	ACTGG	2 cut(s)	172, 218
Bst6I	CTCTTC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	267, 309, 319
BstDEI	CTNAG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 113, 299, 308
BstNSI	RCATGY	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	165, 232
Cac8I	GCNNGC	3 cut(s)	267, 309, 319
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	2 cut(s)	162, 193
CviJI	RGCY	5 cut(s)	16, 23, 265, 302, 307
CviKI_1	RGCY	5 cut(s)	16, 23, 265, 302, 307
DdeI	CTNAG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	208
FaeI	CATG	2 cut(s)	165, 196
FaiI	YATR	6 cut(s)	163, 194, 242, 257, 259, 291
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	161, 192
GsuI	CTGGAG	1 cut(s)	108
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	2 cut(s)	165, 196
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	107, 165, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 113, 299, 308
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	165, 196
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	157, 185
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	132, 153, 230
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	104, 113, 299, 308
NlaIII	CATG	2 cut(s)	165, 196
NlaIV	GGNNCC	2 cut(s)	69, 218
NspI	RCATGY	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	31
Psp1406I	AACGTT	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	69, 218
PspPI	GGNCC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	8 cut(s)	18, 25, 49, 77, 124, 222, 267, 304
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	288
SsiI	CCGC	1 cut(s)	155
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	172, 232
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	172, 232
VpaK11BI	GGWCC	1 cut(s)	44
XceI	RCATGY	1 cut(s)	165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.