Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005252

Physical Location & Seq

Genomic Coordinates Forward (+)

61899130 .. 61901384

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGTCTTCAAAGCTCCAAGCGCTGTGGAACCACCCGGCCGGCCCTAAAACCATTCATTTTTGGGCACCGACTTTTAAATGGGGCATCATCATAGCTAATATTGCTGACTTCTCTAAACCACCTGAAAATCTTCCATATCCTCAGCAAATAGCCGTTGCATGCACTGGAATTGTCTGGTCACGCTATTGTACTGTTATCACTCCTAAGAACTGGAATCTTCTTAGTGTCAACGTAGCAATGGCCGGGACAGGCCTCTACCAACTCTCACGGAAAATACGGCAGGACTATTTCTCTGAGGCAGAACCAGCTGTTGCAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098573 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

108

Amino Acids

12.08

Weight (kDa)

9.03

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	6 - 103	3.6e-38	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14695 AT4G14695 AT4G14695 AT4G22310
fragaria_vesca	FvH4_2g37250
malus_domestica	MD03G1193700.v1.1 MD05G1356700.v1.1 MD10G1329800.v1.1
prunus_persica	Prupe.4G012300_v2.0.a1 Prupe.4G223400_v2.0.a1
pyrus_communis	pycom05g32270 pycom10g27950
rosa_chinensis	RchiOBHm_Chr6g0304451 RchiOBHm_Chr6g0304471
rosa_laevigata	RLG00000010974 RLG00000010976
rosa_roxburghii	Rroxscaffold_7G00163720
rosa_rugosa	Rorug06G0331900 Rorug06G0332000
rosa_samantha	Rh6AG444600 Rh6AG444800 Rh6BG457600 Rh6BG457800 Rh6CG457400 Rh6CG457500 Rh6DG444100 Rh6DG444300
rosa_wichuraiana	Rw6G038600 Rw6G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AcoI	YGGCCR	2 cut(s)	39, 243
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	193
AfeI	AGCGCT	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	3 cut(s)	16, 98, 311
AluI	AGCT	3 cut(s)	16, 98, 311
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	4 cut(s)	39, 43, 243, 253
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	38, 247
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	144
BceAI	ACGGC	2 cut(s)	140, 296
BcnI	CCSGG	2 cut(s)	38, 247
BfoI	RGCGCY	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	38, 247
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	32, 69
BmrFI	CCNGG	2 cut(s)	38, 247
BmsI	GCATC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	2 cut(s)	38, 247
BsaHI	GRCGYC	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	172, 218
Bse3DI	GCAATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	158, 288
BseNI	ACTGG	2 cut(s)	172, 218
BseSI	GKGCMC	1 cut(s)	70
BseX3I	CGGCCG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	41, 45, 245, 255
BshNI	GGYRCC	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	38, 42, 246
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	41, 45, 245, 255
Bsp1286I	GDGCHC	1 cut(s)	70
BspANI	GGCC	4 cut(s)	41, 45, 245, 255
BspCNI	CTCAG	2 cut(s)	157, 289
BspLI	GGNNCC	2 cut(s)	32, 69
BspT107I	GGYRCC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	172, 218
BssAI	RCCGGY	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	43, 163
BstDEI	CTNAG	4 cut(s)	144, 207, 224, 297
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 104, 308
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	36, 245
BstSLI	GKGCMC	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	41, 45, 245, 255
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	43, 163
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	8 cut(s)	16, 41, 45, 98, 155, 245, 255, 311
CviKI_1	RGCY	8 cut(s)	16, 41, 45, 98, 155, 245, 255, 311
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	4 cut(s)	144, 207, 224, 297
DraI	TTTAAA	1 cut(s)	79
EaeI	YGGCCR	2 cut(s)	39, 243
EagI	CGGCCG	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	24
Eco52I	CGGCCG	1 cut(s)	39
FaeI	CATG	1 cut(s)	165
FaiI	YATR	3 cut(s)	95, 139, 163
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	161
FseI	GGCCGGCC	1 cut(s)	45
GlaI	GCGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	41, 45, 245, 255
HapII	CCGG	3 cut(s)	38, 42, 246
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	38, 42, 246
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	161, 165, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 104, 308
HpyF3I	CTNAG	4 cut(s)	144, 207, 224, 297
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	21
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	125, 212
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	3 cut(s)	153, 266, 292
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	38, 42, 246
MspR9I	CCNGG	2 cut(s)	38, 247
MwoI	GCNNNNNNNGC	3 cut(s)	22, 104, 308
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	2 cut(s)	38, 247
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	32, 69
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	32, 69
PspPI	GGNCC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	311
RigI	GGCCGGCC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	38, 247
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	18, 100, 127, 237, 313
SfaNI	GCATC	1 cut(s)	96
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	1 cut(s)	171
SseBI	AGGCCT	1 cut(s)	255
SspI	AATATT	1 cut(s)	103
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	36, 245
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	237
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	172
XceI	RCATGY	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.