Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005252

Physical Location & Seq

Genomic Coordinates Forward (+)

31737044 .. 31738816

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGGCTTCGAAGCTCCAAGCGCTGTGGAATCACCCGGCCGGCCCTAAAACCATTCACTTTTGGGCTCCCACATTTAAATGGGGAATCAGCATAGCTAATGTTGCTGACTTCGCCAAACCACCAGAAAACCTTTCGTATCCTCAGCAAATAGCGGTTGCGTGCACTGGAGTTGTTTGGTCACGTTATAGCACTGTCATAACTCCGAAGAACTGGAATCTTTTTAGTGTGAACGTAGCAATGGCAGGGACAGGCCTCTACCAACTCAGTCGTAAAATACGGCATGACTATTTCTCCGAGAAAGAGGCAGCAGTTGCCGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098573 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

109

Amino Acids

12.04

Weight (kDa)

9.17

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14695 AT4G14695 AT4G14695 AT4G22310
fragaria_vesca	FvH4_2g37250
malus_domestica	MD03G1193700.v1.1 MD05G1356700.v1.1 MD10G1329800.v1.1
prunus_persica	Prupe.4G012300_v2.0.a1 Prupe.4G223400_v2.0.a1
pyrus_communis	pycom05g32270 pycom10g27950
rosa_chinensis	RchiOBHm_Chr6g0304451 RchiOBHm_Chr6g0304471
rosa_laevigata	RLG00000010974 RLG00000010976
rosa_roxburghii	Rroxscaffold_7G00163720
rosa_rugosa	Rorug06G0331900 Rorug06G0332000
rosa_samantha	Rh6AG444600 Rh6AG444800 Rh6BG457600 Rh6BG457800 Rh6CG457400 Rh6CG457500 Rh6DG444100 Rh6DG444300
rosa_wichuraiana	Rw6G038600 Rw6G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 155
AcoI	YGGCCR	1 cut(s)	39
AfeI	AGCGCT	1 cut(s)	24
AluBI	AGCT	2 cut(s)	16, 98
AluI	AGCT	2 cut(s)	16, 98
Alw21I	GWGCWC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	3 cut(s)	39, 43, 253
ApaLI	GTGCAC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	167
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	296
BciVI	GTATCC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	6, 309
BlsI	GCNGC	2 cut(s)	7, 310
Bme1390I	CCNGG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	172, 218
Bse3DI	GCAATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	158, 280
BseNI	ACTGG	2 cut(s)	172, 218
BseSI	GKGCMC	1 cut(s)	167
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	41, 45, 255
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	38, 42
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	41, 45, 255
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	70, 167
BspACI	CCGC	2 cut(s)	5, 155
BspANI	GGCC	3 cut(s)	41, 45, 255
BspCNI	CTCAG	2 cut(s)	157, 279
BspLI	GGNNCC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	172, 218
BssAI	RCCGGY	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	43, 163
BstDEI	CTNAG	2 cut(s)	144, 266
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 104, 113, 314
BstSCI	CCNGG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	320
BstZI	CGGCCG	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	41, 45, 255
BtsIMutI	CAGTG	2 cut(s)	165, 192
Cac8I	GCNNGC	2 cut(s)	43, 163
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	7 cut(s)	8, 16, 41, 45, 68, 98, 255
CviKI_1	RGCY	7 cut(s)	8, 16, 41, 45, 68, 98, 255
DdeI	CTNAG	2 cut(s)	144, 266
DraI	TTTAAA	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	39
EagI	CGGCCG	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	70
Eco47III	AGCGCT	1 cut(s)	24
Eco52I	CGGCCG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	1 cut(s)	287
FaiI	YATR	4 cut(s)	95, 189, 200, 285
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	6, 309
FriOI	GRGCYC	1 cut(s)	70
FseI	GGCCGGCC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	6, 309
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	6, 309
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	3 cut(s)	41, 45, 255
HapII	CCGG	2 cut(s)	38, 42
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	3 cut(s)	31, 87, 217
HpaII	CCGG	2 cut(s)	38, 42
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	165, 232
Hpy188I	TCNGA	2 cut(s)	207, 298
Hpy8I	GTNNAC	2 cut(s)	165, 232
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	2 cut(s)	184, 234
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 104, 113, 314
HpyF3I	CTNAG	2 cut(s)	144, 266
HpySE526I	ACGT	2 cut(s)	184, 234
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	21, 73
LpnPI	CCDG	7 cut(s)	51, 55, 138, 153, 199, 231, 237
Lsp1109I	GCAGC	1 cut(s)	320
MaeII	ACGT	2 cut(s)	184, 234
MaeIII	GTNAC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	70, 167
MnlI	CCTC	3 cut(s)	153, 266, 298
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	79
MspI	CCGG	2 cut(s)	38, 42
MspR9I	CCNGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	22, 104, 113, 314
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	38
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	180
NspV	TTCGAA	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	31, 87, 217
PkrI	GCNGC	2 cut(s)	7, 310
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	44
RigI	GGCCGGCC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	6, 309
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	70, 167
SetI	ASST	5 cut(s)	18, 100, 135, 187, 237
SfuI	TTCGAA	1 cut(s)	11
SmiI	ATTTAAAT	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	79
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	5, 155
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	36
SwaI	ATTTAAAT	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	2 cut(s)	187, 237
TaqI	TCGA	1 cut(s)	11
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	31, 87, 217
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	172, 199
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	180
TspRI	CASTG	2 cut(s)	172, 199
VneI	GTGCAC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.