Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005252

Physical Location & Seq

Genomic Coordinates Reverse (-)

48489470 .. 48490981

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0332000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAATTGGAATTTAAGCACAGAAAGCTGATTAGCCCACCCTGTTCATTAAAATGTAAAATCCCCCATAATAACGGTATCTTCATAGTCGTCGCATCGTCGTTGGCTGCAATCGCTTTGCTTGTTATTTGCGGCTATTTTCTCTATGTAAAGTACTACAAAAACAGAAGAAGATCACCATCACAACCACAACCACAACAACATCTACCTCATCAGGAGGAGGAGACTCTTCATCATCAGGATCATCATGCTGAGTTGTTTATTGATGAAGAGCATGGACCTGTGGTTGACCACCCCATATGGTACATCCGCACCGTCGGTCTGCAACAATCGCTTATCAGCTCCATCAGCGTGTGCCAGTACAAGAAAGGTGATGGCCTTATCGAAGGGACAGAGTGCGCTGTGTGCTTGAGTGAGTTCCAAGAAGATGAGACTTTGAGACTTCTGCCAAAGTGTGATCATGCTTTTCATATTCCCTGTATTGATACTTGGCTCACATCTCATACAAATTGCCCCTTGTGCCGTGCCCCCATTATCAAAACCGGCGCAACAGATGTGGCACCACCCGAGCCATTTGTTGCAGCTGATTCAAGTGAGCCAGCAGAGGAAGAAACCCCGGTCGAGGTTCTAGAAAATACAGGTGAGTCCAGTACTAGTACTGGAGGAGTTGAAGATGAAATTTGTGATGGGATTAGTAGGACTACTGAAGCAGGGGAAGATGATATCATTAACAAACAGATCTGTATTAATGAGGAGGAGGTGGATGATGATGTGGAGGAGCCAAGAAGAAGATCGGTTTCCATGGATTCTGCATCAGCTTTGAAGATTAGTCTTGCGGTTTCTAATGTTGTTGAGGTGGATAAATCAAACCGGGGGATTGAAATTGTTGCCAAGAGAGTTGGGGGAGATCAGAAATTGTCAAGGCAGAAAGGTAGTTCTTCAAGAGGGGCATCTTTACAAAATGGAAAACAAACAATTCAGAAGTCGTCTTCCTGGAATGGCAAGTTCTCATTATGCAGGGACATCAACAACTGTGACTCCGTTGTTCCACTGCGAAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098573 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

354

Amino Acids

39.2

Weight (kDa)

5.22

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	132 - 175	2.3e-13	Ring finger domain
zf-RING_11	PF17123	132 - 161	4.3e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	132 - 174	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	133 - 175	2.1e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	133 - 174	5.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14695 AT4G14695 AT4G14695 AT4G22310
fragaria_vesca	FvH4_2g37250
malus_domestica	MD03G1193700.v1.1 MD05G1356700.v1.1 MD10G1329800.v1.1
prunus_persica	Prupe.4G012300_v2.0.a1 Prupe.4G223400_v2.0.a1
pyrus_communis	pycom05g32270 pycom10g27950
rosa_chinensis	RchiOBHm_Chr6g0304451 RchiOBHm_Chr6g0304471
rosa_laevigata	RLG00000010974 RLG00000010976
rosa_roxburghii	Rroxscaffold_7G00163720
rosa_rugosa	Rorug06G0331900 Rorug06G0332000
rosa_samantha	Rh6AG444600 Rh6AG444800 Rh6BG457600 Rh6BG457800 Rh6CG457400 Rh6CG457500 Rh6DG444100 Rh6DG444300
rosa_wichuraiana	Rw6G038600 Rw6G038610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AciI	CCGC	3 cut(s)	132, 310, 836
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	11, 678
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	5 cut(s)	155, 305, 362, 652, 658
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	5 cut(s)	591, 671, 823, 881, 942
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	992
AluBI	AGCT	5 cut(s)	28, 342, 584, 818, 1059
AluI	AGCT	5 cut(s)	28, 342, 584, 818, 1059
Alw26I	GTCTC	3 cut(s)	218, 425, 433
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	107, 581
ApoI	RAATTY	2 cut(s)	11, 678
AseI	ATTAAT	1 cut(s)	747
AspLEI	GCGC	2 cut(s)	401, 548
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	2 cut(s)	617, 872
AsuHPI	GGTGA	3 cut(s)	168, 383, 653
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	981
BbvI	GCAGC	2 cut(s)	94, 593
BccI	CCATC	4 cut(s)	187, 353, 368, 680
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	1 cut(s)	994
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	2 cut(s)	617, 872
BcoDI	GTCTC	3 cut(s)	218, 425, 433
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	2 cut(s)	629, 654
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	3 cut(s)	108, 133, 582
BlsI	GCNGC	3 cut(s)	109, 134, 583
BmcAI	AGTACT	3 cut(s)	155, 652, 658
Bme1390I	CCNGG	3 cut(s)	617, 872, 994
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	561, 780
BmrFI	CCNGG	3 cut(s)	617, 872, 994
BmsI	GCATC	3 cut(s)	104, 821, 959
BpiI	GAAGAC	1 cut(s)	981
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	430
BpuMI	CCSGG	2 cut(s)	617, 872
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	615, 801, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	1022, 1052
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	358, 648, 664
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	994
BseDI	CCNNGG	3 cut(s)	615, 801, 871
BseGI	GGATG	2 cut(s)	306, 769
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	3 cut(s)	358, 648, 664
BseRI	GAGGAG	6 cut(s)	233, 236, 678, 767, 770, 791
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	2 cut(s)	94, 593
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	559
BsiEI	CGRYCG	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	3 cut(s)	543, 617, 871
BslFI	GGGAC	2 cut(s)	403, 1034
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	3 cut(s)	218, 425, 433
BsmFI	GGGAC	2 cut(s)	403, 1034
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	3 cut(s)	132, 310, 836
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	561, 780
BspPI	GGATC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	358, 648, 664
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	615, 801, 871
BssMI	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	994
Bst4CI	ACNGT	3 cut(s)	77, 316, 1034
Bst6I	CTCTTC	2 cut(s)	234, 264
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	2 cut(s)	306, 769
BstHHI	GCGC	2 cut(s)	401, 548
BstKTI	GATC	6 cut(s)	176, 244, 460, 741, 794, 910
BstMAI	GTCTC	3 cut(s)	218, 425, 433
BstMBI	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 113, 331, 348, 405, 519
BstNI	CCWGG	1 cut(s)	994
BstSCI	CCNGG	3 cut(s)	615, 870, 992
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	2 cut(s)	94, 593
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	1 cut(s)	738
BstYI	RGATCY	1 cut(s)	738
BsuRI	GGCC	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	801
BtsCI	GGATG	2 cut(s)	306, 769
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	1 cut(s)	1049
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	2 cut(s)	401, 548
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	5 cut(s)	154, 304, 361, 651, 657
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	4 cut(s)	248, 275, 461, 802
CviQI	GTAC	5 cut(s)	154, 304, 361, 651, 657
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	6 cut(s)	175, 243, 459, 740, 793, 909
DpnII	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
Eam1104I	CTCTTC	2 cut(s)	234, 264
EarI	CTCTTC	2 cut(s)	234, 264
Eco130I	CCWWGG	1 cut(s)	801
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	992
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	4 cut(s)	251, 278, 464, 805
FaqI	GGGAC	2 cut(s)	403, 1034
FatI	CATG	4 cut(s)	247, 274, 460, 801
FauNDI	CATATG	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	108, 133, 582
FokI	GGATG	2 cut(s)	293, 776
Fsp4HI	GCNGC	3 cut(s)	108, 133, 582
FspBI	CTAG	2 cut(s)	629, 654
GlaI	GCGC	2 cut(s)	400, 547
GluI	GCNGC	3 cut(s)	108, 133, 582
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	3 cut(s)	543, 617, 871
HhaI	GCGC	2 cut(s)	401, 548
Hin1II	CATG	4 cut(s)	251, 278, 464, 805
Hin6I	GCGC	2 cut(s)	399, 546
HinP1I	GCGC	2 cut(s)	399, 546
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	1057
HinfI	GANTC	5 cut(s)	226, 587, 644, 806, 1037
HpaII	CCGG	3 cut(s)	543, 617, 871
HphI	GGTGA	3 cut(s)	168, 383, 653
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	912, 981
Hpy188III	TCNNGA	4 cut(s)	215, 239, 629, 942
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	3 cut(s)	95, 103, 320
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	3 cut(s)	77, 316, 1034
HpyCH4V	TGCA	5 cut(s)	110, 325, 581, 812, 1017
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 113, 331, 348, 405, 519
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	251, 278, 464, 805
HspAI	GCGC	2 cut(s)	399, 546
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	347, 778
Lsp1109I	GCAGC	2 cut(s)	94, 593
LweI	GCATC	3 cut(s)	104, 821, 959
MaeI	CTAG	2 cut(s)	629, 654
MaeIII	GTNAC	1 cut(s)	1034
MalI	GATC	6 cut(s)	175, 243, 459, 740, 793, 909
MboI	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
MflI	RGATCY	1 cut(s)	738
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	7 cut(s)	5, 11, 508, 678, 882, 914, 975
MlyI	GAGTC	3 cut(s)	220, 653, 1031
MseI	TTAA	4 cut(s)	15, 50, 729, 747
MslI	CAYNNNNRTG	2 cut(s)	52, 350
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	3 cut(s)	543, 617, 871
MspR9I	CCNGG	3 cut(s)	617, 872, 994
MvaI	CCWGG	1 cut(s)	994
MwoI	GCNNNNNNNGC	6 cut(s)	25, 113, 331, 348, 405, 519
NciI	CCSGG	2 cut(s)	617, 872
NcoI	CCATGG	1 cut(s)	801
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
NlaIII	CATG	4 cut(s)	251, 278, 464, 805
NlaIV	GGNNCC	2 cut(s)	561, 780
NmuCI	GTSAC	1 cut(s)	1034
PciSI	GCTCTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	587, 806
PfoI	TCCNGGA	1 cut(s)	992
PkrI	GCNGC	3 cut(s)	109, 134, 583
PleI	GAGTC	3 cut(s)	220, 652, 1031
PpsI	GAGTC	3 cut(s)	220, 652, 1031
PshBI	ATTAAT	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	992
PspGI	CCWGG	1 cut(s)	992
PspN4I	GGNNCC	2 cut(s)	561, 780
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	738
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	5 cut(s)	155, 305, 362, 652, 658
RsaNI	GTAC	5 cut(s)	154, 304, 361, 651, 657
RseI	CAYNNNNRTG	2 cut(s)	52, 350
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	15, 50, 729, 747
SatI	GCNGC	3 cut(s)	108, 133, 582
Sau3AI	GATC	6 cut(s)	173, 241, 457, 738, 791, 907
Sau96I	GGNCC	1 cut(s)	278
ScaI	AGTACT	3 cut(s)	155, 652, 658
SchI	GAGTC	3 cut(s)	220, 653, 1031
ScrFI	CCNGG	3 cut(s)	617, 872, 994
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	104, 821, 959
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	52, 350
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	7 cut(s)	5, 11, 508, 678, 882, 914, 975
SsiI	CCGC	3 cut(s)	132, 310, 836
SspMI	CTAG	2 cut(s)	629, 654
StyD4I	CCNGG	3 cut(s)	615, 870, 992
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	3 cut(s)	77, 316, 1034
TaqI	TCGA	2 cut(s)	384, 621
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	7 cut(s)	5, 11, 508, 678, 882, 914, 975
TatI	WGTACW	4 cut(s)	153, 360, 650, 656
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	587, 806
Tru1I	TTAA	4 cut(s)	15, 50, 729, 747
Tru9I	TTAA	4 cut(s)	15, 50, 729, 747
TscAI	CASTG	1 cut(s)	1056
TseFI	GTSAC	1 cut(s)	1034
TseI	GCWGC	2 cut(s)	107, 581
Tsp45I	GTSAC	1 cut(s)	1034
TspDTI	ATGAA	6 cut(s)	36, 73, 221, 282, 458, 690
TspGWI	ACGGA	1 cut(s)	1030
TspRI	CASTG	1 cut(s)	1056
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	2 cut(s)	11, 678
XbaI	TCTAGA	1 cut(s)	628
XspI	CTAG	2 cut(s)	629, 654
ZrmI	AGTACT	3 cut(s)	155, 652, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.