AT4G22370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012145
Physical Location & Seq
Reverse (-)
11810169 .. 11811602
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22370.1

Sequence Viewer

Length: 417 bp
ATGGTTTTATACATGCAGCAAGTTATGGCTTTCTTCTACTGGTTGATCATGAAGCTGGGAAAGGATATCAAGATTATTGTTAAACCAACGTTCAAAGATGGCATGACCGTTGGAGTTCAATGGCAACTCGAATGTGACAAGTCACACATCCAATTGGGGAAGGGATTCAGTTTCCACATTTGCCATATGTACCAGGGAAAGCTATTGATAAAGAATGTGGAGATGTTCATGGAACCAATTTTCCACATAGAGCACCTAAGACTAAGAACTATGGCGTTTGCAGTGAGTATTGCTGAGAAGATAGTCACTTTCTTGAGACAAGCAGAAAACACAAGGAGACAAGCAATGGCACTCCTGCTACTTGTTCTTCTGCTGCTTGCTGCAGCCGCTTTCTACGTCACACGTCTGAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.19

Weight (kDa)

9.78

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22370 AT4G22370 AT4G22370
fragaria_vesca FvH4_3g00940 FvH4_3g00940
malus_domestica MD10G1332100.v1.1
prunus_persica Prupe.4G010000_v2.0.a1 Prupe.4G010000_v2.0.a1
pyrus_communis pycom10g28150
rosa_chinensis RchiOBHm_Chr5g0001461
rosa_laevigata RLG00000030930
rosa_multiflora Rmu_sc0003749.1_g000012
rosa_roxburghii Rroxscaffold_1G00074930
rosa_rugosa Rorug04G0390400
rosa_samantha Rh5AG011300 Rh5BG013800 Rh5CG012300 Rh5DG011500
rosa_wichuraiana Rw5G001070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 387
AclI AACGTT 1 cut(s) 89
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 401
AgsI TTSAA 2 cut(s) 94, 119
AjiI CACGTC 1 cut(s) 404
AjnI CCWGG 1 cut(s) 192
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 55, 202
AluI AGCT 2 cut(s) 55, 202
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 310, 331
ApeKI GCWGC 4 cut(s) 16, 373, 380, 383
Asp700I GAANNNNTTC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 28, 360, 367, 395
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 194
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 310, 331
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 5 cut(s) 17, 374, 381, 384, 387
BlsI GCNGC 5 cut(s) 18, 375, 382, 385, 388
Bme1390I CCNGG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 285, 398
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 4 cut(s) 28, 360, 367, 395
BseYI CCCAGC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 310, 331
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 1 cut(s) 387
BspCNI CTCAG 2 cut(s) 286, 399
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 4 cut(s) 257, 263, 294, 407
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 2 cut(s) 310, 331
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 4 cut(s) 28, 360, 367, 395
BtrI CACGTC 1 cut(s) 404
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 48
Csp6I GTAC 1 cut(s) 190
CviAII CATG 4 cut(s) 13, 49, 103, 229
CviJI RGCY 4 cut(s) 29, 55, 202, 386
CviKI_1 RGCY 4 cut(s) 29, 55, 202, 386
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 4 cut(s) 257, 263, 294, 407
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 67
FaeI CATG 4 cut(s) 16, 52, 106, 232
FatI CATG 4 cut(s) 12, 48, 102, 228
FauNDI CATATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 5 cut(s) 17, 374, 381, 384, 387
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 5 cut(s) 17, 374, 381, 384, 387
GluI GCNGC 5 cut(s) 17, 374, 381, 384, 387
GsaI CCCAGC 1 cut(s) 59
Hin1II CATG 4 cut(s) 16, 52, 106, 232
HinfI GANTC 2 cut(s) 165, 411
Hpy188I TCNGA 2 cut(s) 408, 416
Hpy188III TCNNGA 3 cut(s) 49, 70, 313
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 3 cut(s) 89, 396, 403
HpyCH4V TGCA 3 cut(s) 16, 281, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 4 cut(s) 257, 263, 294, 407
HpySE526I ACGT 3 cut(s) 89, 396, 403
Hsp92II CATG 4 cut(s) 16, 52, 106, 232
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 25, 41, 179, 206, 368
Lsp1109I GCAGC 4 cut(s) 28, 360, 367, 395
MaeII ACGT 3 cut(s) 89, 396, 403
MaeIII GTNAC 4 cut(s) 134, 141, 304, 397
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 25, 310, 359
MfeI CAATTG 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 152, 237
MmeI TCCRAC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 194
MunI CAATTG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeI CATATG 1 cut(s) 186
NdeII GATC 1 cut(s) 45
NlaIII CATG 4 cut(s) 16, 52, 106, 232
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 4 cut(s) 134, 141, 304, 397
NspI RCATGY 1 cut(s) 16
PagI TCATGA 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 165, 411
PkrI GCNGC 5 cut(s) 18, 375, 382, 385, 388
Psp1406I AACGTT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 234
PstI CTGCAG 1 cut(s) 385
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 5 cut(s) 17, 374, 381, 384, 387
Sau3AI GATC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 255
SetI ASST 6 cut(s) 57, 92, 204, 258, 399, 406
SfcI CTRYAG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 2 cut(s) 152, 237
SsiI CCGC 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 3 cut(s) 92, 399, 406
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 152, 237
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 2 cut(s) 165, 411
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 4 cut(s) 134, 141, 304, 397
TseI GCWGC 4 cut(s) 16, 373, 380, 383
Tsp45I GTSAC 4 cut(s) 134, 141, 304, 397
TspDTI ATGAA 2 cut(s) 65, 217
TspRI CASTG 1 cut(s) 288
XceI RCATGY 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.